Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0010740

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG394900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3348 bp

ATGGCGAACGGAACGGATTCCGACGAGTTCGTGGTGCGGTCTCGGGTCCGGCCGGGGCTGAAGCGCGAATTGACCTTCGCATTGGCTCAGGCGGAGGTCTCCTGTTCGTTGGGCCGGACCCGGGCCAGGAAGGCCCAGAATGAGCTGCCGGTGAATGTGAACCCTAAGAGATTGAAGAAGGAGGCGAAAAGCGAGCCGCAGAAGGACGACGAGGAGGAGAAACCGGCGAGTGGTGGCGAGAATGTGAAGGTTGTTGAGGATTTGGTGGAGGCTATAAGCGAAGAAGATGCGAAGAGCGATGTGGTGGATCTAATGAGCGACGACGAGCCTAGAAGCCATGTGGCGGAGTCCAAGGTCGTCACCGAAGACGAATTGAAGAACGGTGTTGTAGAGATGGCTATGGATAATGAGCAAAACGTTGGGTCTGTTGGTAATGAAGATGAGGCTAAGCAGGAGCAATTGAAGATGGAGGAGCCGGAAAAGCCCGATTCGATTGGTAATGGTGAAAAGGTGGAACCGGAAAAGCCCAATTCGATTGAAAATGGTGAAAAGGTGGAAGGAGAAGTGATTGAAAAGCCGCTGAGGAGGTACACTCGGTCGGCATCGAGGCGGAAGAGCCAAGTAGCTGAGCCTAAGCTGACAGAGAAGGTCTGCGAAGACGAAATAAAGAATGGTGCAGTGGATATGGCTACTGATACCGGCTGCGGTGGTGATTCCGTGAATGAAGATGAACCTAAGCAGGAGGAACAGCCTTTGGTGAAACTGGAAATCCTCAATTTGATTGAAAAGGGTGATACGGTTGAAGGTGAGGTGAGTGAAACGCCGCAGAGGCGGTACACTCGGTCAGCATTGAAGCTTAAAAGCCAAGTGGCTGAGTCTATCTTGAAGGTCAGTGAAGATGAAATGAAGAATGGTGTAGTGGATATGGCTATTGATGATGAACCCAATACCGGTAGTGTTGGTGATTCTGTGGCTGAAGATGAGCCTAGGCAGGAGGAATTGAAGAAGAGTGAATCTGAACAGCCTTTGGTGAAACTAGAAATCCTCGATTTGATTGAAAAGGGTGATAAGGTGGAATGTGAGGCGAATGAAAAGCCGCAGAGGAGGTTCACTCGGTCAACATTGAACACAGAGAATGAAGCCCTAGACTTCAATTCGGTTTCCCAGAAAAGCACACCAGCTGAGGTTGAGACGAAAATGCGGAAGACTGTGAAAAAGTTTAGACTGTTAGAGCTTCTTGAAACTGGTATTCTTGAGGGGCAGCGGGTGACTTACCTTAAAGGATCAAAGGGAAGAAAAACTGCAGAGAAAGGGCTTACAGGAGTGATTACTGGTTCTGCTATAATGTGTCACTGTGAGCGATGCAATGGAACTGATGGTGTTTCACCAGCTATTTTTGAGTTGCATGCTGAAAGCGCAAATAAACGTCCTCCTGAGTACATATATCTTGAGAACAGGAAGACCCTTCGGGATGTCCTAACTGCATGCAATTCTTCATTGGAAACCTTGGAAGAAGCTGTCCGGCTCGCTGTTGGTTGCTCATCTATAAAGACGTGTACCATCTGCCTCAATTGCAAAGGATCTATTTGCAAAGATGATACTAGATCAGCAATGCTTCTTTGTCGCTCCTGCTTGGACTTGAAAGAGACCCAAGCTAAGTTATCTGTAGCTGCGAAACCTTCTGAAGTTGCAAACGATTGTTCTGAATTACCAAAGCCGGTTTCAGTTGCAAACTGTCCTGACACCGTTCCAGAGTGTCCTGACATTGTCCTAGAGTGCCCTAACGCCATTTCAAGGTGTCATGATACTGTTTCAAAGTGTCTCGGTACCATTTCAAATTGCCCTGATTCTTCTCCTAAGTGTCCTGATACTGTGCTGAAGAGTAGGTCGTCAGCAAGTAAGAGTCGAGGAAGAGTAACCAGAAAGGATACCGGGATGCACAAGTTGGTTTTTGAGGATAATTTCTTACCGGATGGAACTGAAGTAGTTTATGTTTCGGGTGGACAGAGACGGGCTGTCGGCTATAAAAAGGGGTCTGGCATCATGTGTAGTTGCTGCAATACAGAGGTCAGTCCCTCGCAGTTTGAAGCCCATGCTGGCTGTTCATCACGTCGCAAACCCTACCACAACATTTTCATATCTAATGGGGTATCTCTTCACGAGTTGGCATTAAAGCTTTCAAAAAAGCGGAGGTTGTCTACCGAGGACAGTGATGACCTTTGCTTCATCTGCAGAAAGGGAGGAAAGGTCATATGCTGTGATAGTTGCCCAAGGGTTTTTCATGCAGGGTGCCTTTCTCTACCAACTGTCCCTAATGGTACTTGGTACTGTAAACATTGCCAGACTATGTTCGATAGAGACATAGATGCAGAGCGTAATGTCAATGCTGTTGCAGCTGGAAGGGTTGCAGGAGTTGATCCTATAAAACAAATAACCAACCGATGCATTCGTATTGTCACAGCTTGCGATGAAAAGTTCGGTGGATGTGCACTGTGCAGAGGCCATGAGTTCAAAAACGAGGGTTTTGGTCCTGGGACAGTTATTTTATGCGATCAGTGTGAAAGGGAATTTCATGTCGGCTGTTTGAAGGAAAAAGGAATTGTAGATTTGAAGGAAGTTCCAAAAGAGAAGTGGTTCTGTCATCCAGATTGTCTCAGGGTTCATTCAGCTTTGCAGAAGTTGGTAGTTCATGGGCAACAGAAGCTTCCAGAGTCCCTCCTGAATGTTGTAAGGAAGAAAAAGAATGAAAAAGGTCCAGCAAAGGGGGGTCTTGATATAAAATGGAGGGTGCTTAGTGGGAAAATGTCTAATGATGATGAAAGTTTACAGTTGCTTTCCAAGGCTCTTGCCATATTTCATGATCAATTTGCTCCCATTGTTGATAAGGAATCAGGCCTCGACTTCATTAGGGAAATGCTTTATGGAGGGGCCATAAAGACTCAAGATTTTGCTGGGATGTACTGTGCTATAGTTACACTCAACGAATCGGTCGTGTCAGCTGCTATGTTTCGTATCTATGGGACGGATGTGGCAGAGCTTCCTCTAGTGGCAACAAGTGCTGATTGCCAAGGACAGGGTTACTTTCAGACCTTATTTTCATGTATTGAGAGGCTTCTTGCATTTCTAAACGTGAAAATTCTTCTGCTGCCTGCTGCTGATAAGGCAGCATCCATATGGACAAAAAAATTTGGTTTTCAGAATCTAAACCAAAGTGAGATACACGAGTACAGGAAACATTACCCAATACTGATTTTCCATGGGACATCAGTGCTGCAGAAGTCAGTCCCCAAGCGCAGAGTACCTGGTTCACAGGAGAGTAAGGCGAAGGCGAAGGTTGAATCATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

1115

Amino Acids

122.91

Weight (kDa)

5.9

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	441 - 496	1.1e-08	Tify domain binding domain
TDBD	PF16135	677 - 722	7.9e-16	Tify domain binding domain
PHD-1st_NSD	PF23011	738 - 781	5.2e-06	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD	PF00628	741 - 780	1.1e-06	PHD-finger
IDM1_C	PF23209	956 - 1094	4.5e-51	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27980
fragaria_vesca	FvH4_3g30510 FvH4_3g30510 FvH4_3g30510
malus_domestica	MD03G1127900.v1.1 MD11G1149500.v1.1
prunus_persica	Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1
pyrus_communis	pycom11g12240
rosa_chinensis	RchiOBHm_Chr5g0056471
rosa_laevigata	RLG00000035101
rosa_multiflora	Rmu_sc0002761.1_g000015
rosa_roxburghii	Rroxscaffold_1G00023850
rosa_rugosa	Rorug05G0300200
rosa_samantha	Rh5AG370700 Rh5BG382000 Rh5CG405100 Rh5DG394900
rosa_wichuraiana	Rw5G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1826
AccB1I	GGYRCC	2 cut(s)	1826, 2289
AccI	GTMKAC	1 cut(s)	2198
AccII	CGCG	1 cut(s)	66
AclI	AACGTT	1 cut(s)	417
AclWI	GGATC	4 cut(s)	315, 1291, 1588, 2411
AcoI	YGGCCR	1 cut(s)	50
AcsI	RAATTY	3 cut(s)	2567, 3135, 3185
AcuI	CTGAAG	5 cut(s)	80, 996, 1704, 1898, 2001
AfiI	CCNNNNNNNGG	8 cut(s)	121, 126, 230, 343, 950, 1794, 2762, 3073
AflIII	ACRYGT	1 cut(s)	1553
AgeI	ACCGGT	1 cut(s)	950
AhdI	GACNNNNNGTC	1 cut(s)	2015
AjiI	CACGTC	2 cut(s)	1554, 2111
AjnI	CCWGG	3 cut(s)	125, 2530, 3301
AjuI	GAANNNNNNNTTGG	2 cut(s)	1705, 1737
Alw21I	GWGCWC	1 cut(s)	2491
Alw26I	GTCTC	8 cut(s)	45, 103, 1184, 1640, 1826, 2002, 2352, 2657
Alw44I	GTGCAC	1 cut(s)	2487
AlwI	GGATC	4 cut(s)	315, 1291, 1588, 2411
Ama87I	CYCGRG	2 cut(s)	42, 120
AoxI	GGCC	7 cut(s)	50, 112, 123, 132, 2500, 2893, 2928
ApaLI	GTGCAC	1 cut(s)	2487
ApoI	RAATTY	3 cut(s)	2567, 3135, 3185
AsiGI	ACCGGT	1 cut(s)	950
Asp700I	GAANNNNTTC	2 cut(s)	16, 2633
Asp718I	GGTACC	1 cut(s)	1826
AspA2I	CCTAGG	1 cut(s)	986
AspLEI	GCGC	3 cut(s)	66, 1418, 3294
AspS9I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2528, 2753, 2928
AsuC2I	CCSGG	4 cut(s)	54, 121, 122, 1933
AvaI	CYCGRG	2 cut(s)	42, 120
AvaII	GGWCC	4 cut(s)	46, 117, 2528, 2753
AvrII	CCTAGG	1 cut(s)	986
BaeGI	GKGCMC	2 cut(s)	1781, 2491
BaeI	ACNNNNGTAYC	2 cut(s)	3209, 3242
BanI	GGYRCC	2 cut(s)	1826, 2289
BauI	CACGAG	2 cut(s)	2159, 3221
BbsI	GAAGAC	4 cut(s)	372, 663, 1211, 1466
Bbv12I	GWGCWC	1 cut(s)	2491
BbvCI	CCTCAGC	2 cut(s)	581, 1182
BccI	CCATC	5 cut(s)	388, 460, 1370, 1568, 1967
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	3 cut(s)	127, 2532, 3303
BciVI	GTATCC	1 cut(s)	1921
BclI	TGATCA	1 cut(s)	2860
BcnI	CCSGG	4 cut(s)	54, 121, 122, 1933
BcoDI	GTCTC	8 cut(s)	45, 103, 1184, 1640, 1826, 2002, 2352, 2657
BfaI	CTAG	7 cut(s)	330, 987, 1037, 1145, 1602, 1772, 3044
BfmI	CTRYAG	5 cut(s)	1302, 1665, 2230, 2967, 3272
BfuI	GTATCC	1 cut(s)	1921
BglI	GCCNNNNNGGC	2 cut(s)	131, 829
BlnI	CCTAGG	1 cut(s)	986
BlpI	GCTNAGC	2 cut(s)	447, 627
Bme1390I	CCNGG	7 cut(s)	54, 121, 122, 127, 1933, 2532, 3303
Bme18I	GGWCC	4 cut(s)	46, 117, 2528, 2753
BmeRI	GACNNNNNGTC	1 cut(s)	2015
BmeT110I	CYCGRG	2 cut(s)	42, 120
BmgBI	CACGTC	2 cut(s)	1554, 2111
BmgT120I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2528, 2753, 2928
BmiI	GGNNCC	7 cut(s)	47, 119, 474, 516, 1828, 2291, 2929
BmrFI	CCNGG	7 cut(s)	54, 121, 122, 127, 1933, 2532, 3303
BmsI	GCATC	8 cut(s)	277, 611, 1352, 1926, 2049, 2356, 2432, 3176
BpiI	GAAGAC	4 cut(s)	372, 663, 1211, 1466
BplI	GAGNNNNNCTC	4 cut(s)	577, 609, 1096, 1128
Bpu10I	CCTNAGC	5 cut(s)	87, 581, 633, 735, 1182
Bpu1102I	GCTNAGC	2 cut(s)	447, 627
BpuEI	CTTGAG	3 cut(s)	1274, 1469, 2925
BpuMI	CCSGG	4 cut(s)	54, 121, 122, 1933
BsaI	GGTCTC	3 cut(s)	45, 103, 1640
BsaWI	WCCGGW	3 cut(s)	517, 950, 1969
BsaXI	ACNNNNNCTCC	2 cut(s)	2232, 2262
Bsc4I	CCNNNNNNNGG	8 cut(s)	121, 126, 230, 343, 950, 1794, 2762, 3073
Bse118I	RCCGGY	5 cut(s)	148, 223, 698, 950, 1717
Bse1I	ACTGG	3 cut(s)	768, 1249, 1336
Bse3DI	GCAATG	3 cut(s)	1372, 1617, 2335
BseBI	CCWGG	3 cut(s)	127, 2532, 3303
BseGI	GGATG	8 cut(s)	1477, 1941, 1978, 2489, 2641, 2961, 3031, 3167
BseLI	CCNNNNNNNGG	8 cut(s)	121, 126, 230, 343, 950, 1794, 2762, 3073
BseMI	GCAATG	3 cut(s)	1372, 1617, 2335
BseMII	CTCAG	7 cut(s)	101, 572, 618, 864, 1173, 1425, 2668
BseNI	ACTGG	3 cut(s)	768, 1249, 1336
BseRI	GAGGAG	5 cut(s)	227, 230, 485, 598, 1117
BseSI	GKGCMC	2 cut(s)	1781, 2491
BseX3I	CGGCCG	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	2951
BsgI	GTGCAG	2 cut(s)	696, 2515
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	3 cut(s)	53, 599, 2991
BshFI	GGCC	7 cut(s)	52, 114, 125, 134, 2502, 2895, 2930
BshNI	GGYRCC	2 cut(s)	1826, 2289
BshTI	ACCGGT	1 cut(s)	950
BsiEI	CGRYCG	3 cut(s)	53, 599, 2991
BsiHKAI	GWGCWC	1 cut(s)	2491
BsiHKCI	CYCGRG	2 cut(s)	42, 120
BslFI	GGGAC	7 cut(s)	2058, 2294, 2548, 2698, 3034, 3269, 3274
BslI	CCNNNNNNNGG	8 cut(s)	121, 126, 230, 343, 950, 1794, 2762, 3073
BsmAI	GTCTC	8 cut(s)	45, 103, 1184, 1640, 1826, 2002, 2352, 2657
BsmBI	CGTCTC	2 cut(s)	1184, 2002
BsmFI	GGGAC	7 cut(s)	2058, 2294, 2548, 2698, 3034, 3269, 3274
BsmI	GAATGC	1 cut(s)	2445
BsnI	GGCC	7 cut(s)	52, 114, 125, 134, 2502, 2895, 2930
Bso31I	GGTCTC	3 cut(s)	45, 103, 1640
BsoBI	CYCGRG	2 cut(s)	42, 120
Bsp1286I	GDGCHC	2 cut(s)	1781, 2491
Bsp143I	GATC	7 cut(s)	307, 1283, 1580, 1604, 2416, 2551, 2860
Bsp1720I	GCTNAGC	2 cut(s)	447, 627
Bsp19I	CCATGG	1 cut(s)	3256
BspANI	GGCC	7 cut(s)	52, 114, 125, 134, 2502, 2895, 2930
BspCNI	CTCAG	7 cut(s)	100, 573, 619, 865, 1174, 1426, 2667
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	2 cut(s)	1801, 2857
BspLI	GGNNCC	7 cut(s)	47, 119, 474, 516, 1828, 2291, 2929
BspMAI	CTGCAG	3 cut(s)	1306, 2234, 3276
BspPI	GGATC	4 cut(s)	315, 1291, 1588, 2411
BspQI	GCTCTTC	2 cut(s)	287, 608
BspT107I	GGYRCC	2 cut(s)	1826, 2289
BspTNI	GGTCTC	3 cut(s)	45, 103, 1640
BsrDI	GCAATG	3 cut(s)	1372, 1617, 2335
BsrFI	RCCGGY	5 cut(s)	148, 223, 698, 950, 1717
BsrI	ACTGG	3 cut(s)	768, 1249, 1336
BssAI	RCCGGY	5 cut(s)	148, 223, 698, 950, 1717
BssMI	GATC	7 cut(s)	307, 1283, 1580, 1604, 2416, 2551, 2860
BssSI	CACGAG	2 cut(s)	2159, 3221
BssT1I	CCWWGG	7 cut(s)	351, 986, 1506, 2270, 2838, 3067, 3256
Bst2BI	CACGAG	2 cut(s)	2159, 3221
Bst2UI	CCWGG	3 cut(s)	127, 2532, 3303
Bst6I	CTCTTC	6 cut(s)	287, 608, 1001, 1874, 1906, 2160
BstAPI	GCANNNNNTGC	1 cut(s)	3056
BstC8I	GCNNGC	7 cut(s)	194, 1407, 1486, 1527, 2098, 2464, 3150
BstDSI	CCRYGG	1 cut(s)	3256
BstF5I	GGATG	8 cut(s)	1477, 1941, 1978, 2489, 2641, 2961, 3031, 3167
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	3 cut(s)	66, 1418, 3294
BstKTI	GATC	7 cut(s)	310, 1286, 1583, 1607, 2419, 2554, 2863
BstMAI	GTCTC	8 cut(s)	45, 103, 1184, 1640, 1826, 2002, 2352, 2657
BstMBI	GATC	7 cut(s)	307, 1283, 1580, 1604, 2416, 2551, 2860
BstMCI	CGRYCG	3 cut(s)	53, 599, 2991
BstNI	CCWGG	3 cut(s)	127, 2532, 3303
BstNSI	RCATGY	2 cut(s)	1409, 1488
BstSCI	CCNGG	7 cut(s)	52, 119, 120, 125, 1931, 2530, 3301
BstSFI	CTRYAG	5 cut(s)	1302, 1665, 2230, 2967, 3272
BstSLI	GKGCMC	2 cut(s)	1781, 2491
BstUI	CGCG	1 cut(s)	66
BstV2I	GAAGAC	4 cut(s)	372, 663, 1211, 1466
BstX2I	RGATCY	2 cut(s)	307, 1580
BstYI	RGATCY	2 cut(s)	307, 1580
BstZI	CGGCCG	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	1921
BsuRI	GGCC	7 cut(s)	52, 114, 125, 134, 2502, 2895, 2930
BtgI	CCRYGG	1 cut(s)	3256
BtgZI	GCGATG	3 cut(s)	312, 1375, 2481
BtrI	CACGTC	2 cut(s)	1554, 2111
BtsCI	GGATG	8 cut(s)	1477, 1941, 1978, 2489, 2641, 2961, 3031, 3167
BtsI	GCAGTG	1 cut(s)	684
BtsIMutI	CAGTG	7 cut(s)	684, 898, 1351, 2215, 2489, 2561, 3273
Cac8I	GCNNGC	7 cut(s)	194, 1407, 1486, 1527, 2098, 2464, 3150
CciI	TCATGA	2 cut(s)	1801, 2857
CfoI	GCGC	3 cut(s)	66, 1418, 3294
Cfr10I	RCCGGY	5 cut(s)	148, 223, 698, 950, 1717
Cfr13I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2528, 2753, 2928
Cfr9I	CCCGGG	1 cut(s)	120
CsiI	ACCWGGT	1 cut(s)	3301
CspAI	ACCGGT	1 cut(s)	950
DpnI	GATC	7 cut(s)	309, 1285, 1582, 1606, 2418, 2553, 2862
DpnII	GATC	7 cut(s)	307, 1283, 1580, 1604, 2416, 2551, 2860
DriI	GACNNNNNGTC	1 cut(s)	2015
EaeI	YGGCCR	1 cut(s)	50
EagI	CGGCCG	1 cut(s)	50
Eam1104I	CTCTTC	6 cut(s)	287, 608, 1001, 1874, 1906, 2160
Eam1105I	GACNNNNNGTC	1 cut(s)	2015
EarI	CTCTTC	6 cut(s)	287, 608, 1001, 1874, 1906, 2160
EciI	GGCGGA	3 cut(s)	107, 359, 625
EclXI	CGGCCG	1 cut(s)	50
Eco130I	CCWWGG	7 cut(s)	351, 986, 1506, 2270, 2838, 3067, 3256
Eco147I	AGGCCT	1 cut(s)	2895
Eco31I	GGTCTC	3 cut(s)	45, 103, 1640
Eco47I	GGWCC	4 cut(s)	46, 117, 2528, 2753
Eco52I	CGGCCG	1 cut(s)	50
Eco57I	CTGAAG	5 cut(s)	80, 996, 1704, 1898, 2001
Eco88I	CYCGRG	2 cut(s)	42, 120
EcoRII	CCWGG	3 cut(s)	125, 2530, 3301
EcoT14I	CCWWGG	7 cut(s)	351, 986, 1506, 2270, 2838, 3067, 3256
EcoT22I	ATGCAT	1 cut(s)	2447
ErhI	CCWWGG	7 cut(s)	351, 986, 1506, 2270, 2838, 3067, 3256
Esp3I	CGTCTC	2 cut(s)	1184, 2002
FaqI	GGGAC	7 cut(s)	2058, 2294, 2548, 2698, 3034, 3269, 3274
FauI	CCCGC	1 cut(s)	1257
FauNDI	CATATG	2 cut(s)	2252, 3173
FbaI	TGATCA	1 cut(s)	2860
FblI	GTMKAC	1 cut(s)	2198
FokI	GGATG	8 cut(s)	1484, 1948, 1985, 2496, 2628, 2968, 3038, 3154
FspBI	CTAG	7 cut(s)	330, 987, 1037, 1145, 1602, 1772, 3044
GlaI	GCGC	3 cut(s)	65, 1417, 3293
GsaI	CCCAGC	1 cut(s)	2955
HaeIII	GGCC	7 cut(s)	52, 114, 125, 134, 2502, 2895, 2930
HhaI	GCGC	3 cut(s)	66, 1418, 3294
Hin6I	GCGC	3 cut(s)	64, 1416, 3292
HinP1I	GCGC	3 cut(s)	64, 1416, 3292
HincII	GTYRAC	1 cut(s)	1119
HindII	GTYRAC	1 cut(s)	1119
HindIII	AAGCTT	3 cut(s)	854, 2174, 2702
Hpy188I	TCNGA	6 cut(s)	22, 1018, 1684, 1705, 3087, 3198
Hpy99I	CGWCG	5 cut(s)	26, 212, 323, 326, 2115
HpyCH4IV	ACGT	5 cut(s)	417, 1426, 1553, 2110, 3129
HpySE526I	ACGT	5 cut(s)	417, 1426, 1553, 2110, 3129
HspAI	GCGC	3 cut(s)	64, 1416, 3292
KpnI	GGTACC	1 cut(s)	1830
Ksp22I	TGATCA	1 cut(s)	2860
Kzo9I	GATC	7 cut(s)	307, 1283, 1580, 1604, 2416, 2551, 2860
LguI	GCTCTTC	2 cut(s)	287, 608
LmnI	GCTCC	4 cut(s)	454, 472, 1631, 2875
LweI	GCATC	8 cut(s)	277, 611, 1352, 1926, 2049, 2356, 2432, 3176
MabI	ACCWGGT	1 cut(s)	3301
MaeI	CTAG	7 cut(s)	330, 987, 1037, 1145, 1602, 1772, 3044
MaeII	ACGT	5 cut(s)	417, 1426, 1553, 2110, 3129
MaeIII	GTNAC	7 cut(s)	358, 1267, 1349, 1915, 2455, 2971, 3077
MalI	GATC	7 cut(s)	309, 1285, 1582, 1606, 2418, 2553, 2862
MboI	GATC	7 cut(s)	307, 1283, 1580, 1604, 2416, 2551, 2860
MfeI	CAATTG	2 cut(s)	458, 1570
MflI	RGATCY	2 cut(s)	307, 1580
MhlI	GDGCHC	2 cut(s)	1781, 2491
MlyI	GAGTC	5 cut(s)	356, 884, 1912, 2720, 2932
MmeI	TCCRAC	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	2447
MroXI	GAANNNNTTC	2 cut(s)	16, 2633
MseI	TTAA	3 cut(s)	858, 1278, 2171
MslI	CAYNNNNRTG	1 cut(s)	3172
MspA1I	CMGCKG	5 cut(s)	580, 1181, 1264, 2396, 2999
MspR9I	CCNGG	7 cut(s)	54, 121, 122, 127, 1933, 2532, 3303
MunI	CAATTG	2 cut(s)	458, 1570
Mva1269I	GAATGC	1 cut(s)	2445
MvaI	CCWGG	3 cut(s)	127, 2532, 3303
MvnI	CGCG	1 cut(s)	66
NciI	CCSGG	4 cut(s)	54, 121, 122, 1933
NcoI	CCATGG	1 cut(s)	3256
NdeI	CATATG	2 cut(s)	2252, 3173
NdeII	GATC	7 cut(s)	307, 1283, 1580, 1604, 2416, 2551, 2860
NlaIV	GGNNCC	7 cut(s)	47, 119, 474, 516, 1828, 2291, 2929
NmuCI	GTSAC	4 cut(s)	358, 1267, 1349, 2455
NsiI	ATGCAT	1 cut(s)	2447
NspI	RCATGY	2 cut(s)	1409, 1488
PaeI	GCATGC	2 cut(s)	1409, 1488
PagI	TCATGA	2 cut(s)	1801, 2857
PceI	AGGCCT	1 cut(s)	2895
PciSI	GCTCTTC	2 cut(s)	287, 608
PcsI	WCGNNNNNNNCGW	1 cut(s)	2988
PctI	GAATGC	1 cut(s)	2445
PdmI	GAANNNNTTC	2 cut(s)	16, 2633
PflFI	GACNNNGTC	1 cut(s)	1766
PinAI	ACCGGT	1 cut(s)	950
PleI	GAGTC	5 cut(s)	355, 883, 1911, 2719, 2932
PpsI	GAGTC	5 cut(s)	355, 883, 1911, 2719, 2932
Psp1406I	AACGTT	1 cut(s)	417
Psp6I	CCWGG	3 cut(s)	125, 2530, 3301
PspFI	CCCAGC	1 cut(s)	2951
PspGI	CCWGG	3 cut(s)	125, 2530, 3301
PspN4I	GGNNCC	7 cut(s)	47, 119, 474, 516, 1828, 2291, 2929
PspPI	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2528, 2753, 2928
PstI	CTGCAG	3 cut(s)	1306, 2234, 3276
PsuI	RGATCY	2 cut(s)	307, 1580
PsyI	GACNNNGTC	1 cut(s)	1766
PvuII	CAGCTG	3 cut(s)	1181, 2396, 2999
RseI	CAYNNNNRTG	1 cut(s)	3172
SapI	GCTCTTC	2 cut(s)	287, 608
SaqAI	TTAA	3 cut(s)	858, 1278, 2171
Sau3AI	GATC	7 cut(s)	307, 1283, 1580, 1604, 2416, 2551, 2860
Sau96I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2528, 2753, 2928
SchI	GAGTC	5 cut(s)	356, 884, 1912, 2720, 2932
ScrFI	CCNGG	7 cut(s)	54, 121, 122, 127, 1933, 2532, 3303
SduI	GDGCHC	2 cut(s)	1781, 2491
SexAI	ACCWGGT	1 cut(s)	3301
SfaNI	GCATC	8 cut(s)	277, 611, 1352, 1926, 2049, 2356, 2432, 3176
SfcI	CTRYAG	5 cut(s)	1302, 1665, 2230, 2967, 3272
SfiI	GGCCNNNNNGGCC	1 cut(s)	131
SinI	GGWCC	4 cut(s)	46, 117, 2528, 2753
SmaI	CCCGGG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	3172
SmlI	CTYRAG	3 cut(s)	1253, 1448, 2940
SmoI	CTYRAG	3 cut(s)	1253, 1448, 2940
SphI	GCATGC	2 cut(s)	1409, 1488
SseBI	AGGCCT	1 cut(s)	2895
SspMI	CTAG	7 cut(s)	330, 987, 1037, 1145, 1602, 1772, 3044
StuI	AGGCCT	1 cut(s)	2895
StyD4I	CCNGG	7 cut(s)	52, 119, 120, 125, 1931, 2530, 3301
StyI	CCWWGG	7 cut(s)	351, 986, 1506, 2270, 2838, 3067, 3256
TaiI	ACGT	5 cut(s)	420, 1429, 1556, 2113, 3132
TaqI	TCGA	7 cut(s)	491, 533, 605, 1047, 1906, 2352, 2898
TaqII	GACCGA	4 cut(s)	585, 831, 1104, 2977
TatI	WGTACW	3 cut(s)	1437, 2958, 3225
TauI	GCSGC	4 cut(s)	199, 580, 826, 1099
Tru1I	TTAA	3 cut(s)	858, 1278, 2171
Tru9I	TTAA	3 cut(s)	858, 1278, 2171
TscAI	CASTG	7 cut(s)	684, 898, 1358, 2215, 2496, 2561, 3273
TseFI	GTSAC	4 cut(s)	358, 1267, 1349, 2455
Tsp45I	GTSAC	4 cut(s)	358, 1267, 1349, 2455
TspGWI	ACGGA	4 cut(s)	24, 29, 706, 3038
TspMI	CCCGGG	1 cut(s)	120
TspRI	CASTG	7 cut(s)	684, 898, 1358, 2215, 2496, 2561, 3273
Tth111I	GACNNNGTC	1 cut(s)	1766
VneI	GTGCAC	1 cut(s)	2487
VpaK11BI	GGWCC	4 cut(s)	46, 117, 2528, 2753
XapI	RAATTY	3 cut(s)	2567, 3135, 3185
XceI	RCATGY	2 cut(s)	1409, 1488
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2628
XmaI	CCCGGG	1 cut(s)	120
XmaJI	CCTAGG	1 cut(s)	986
XmiI	GTMKAC	1 cut(s)	2198
XmnI	GAANNNNTTC	2 cut(s)	16, 2633
XspI	CTAG	7 cut(s)	330, 987, 1037, 1145, 1602, 1772, 3044
Zsp2I	ATGCAT	1 cut(s)	2447

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.