Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0010740

Physical Location & Seq

Genomic Coordinates Forward (+)

59872422 .. 59879575

Gene Structure 7154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G034720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3270 bp

ATGGCGAACGGAACGGATTCCGACGAGTTCGTGGTGCGGTCTCGGGTCCGGCCGGGGCTGAAGCGCGAATTGACCTTCGCATTGGCTCAGGCGGAGGTCTCCTGTTCGTTGGGCCGGACCCGGGCCAGGAAGGCCCAGAATGAGCTGCCGGTGAATGTGAACCCTAAGAGATTGAAGAAGGAGGCGAAAAGCGAGCCGCAGAAGGACGACGAGGAGGAGAAACCGGCGAGTGGTGGCGAGAATGTGAAGGTTGTTGAGGATTTGGTGGAGGCTATAAGCGAAGAAGATGCGAAGAGCGATGTGGTGGATCTAATGAGCGACGACGAGCCTAGAAGCCATGTGGCGGAGTCAAAGGTCACCGAAGACGAATTGAAGAACGGTGTTGTAGAGATGGCTATGGATAATGAGCAAAACGTTGGGTCTGTTGGTAATGAAGATGAGGCTAAGCAGGAGCAATTGAAGATGGAGGAGCCGGAAAAGCCCGATTCGATTGGTAATGGTGAAAAGGTGGAACCGGAAAAGCCCAATTCGATTGAAAATGGTGAAAAGGTGGAAGGAGAAGTGATTGAAAAGCCGCTGAGGAGGTACACTCGGTCGGCATCGAGGCGGAAGAGCCAAGTAGCTGAGCCTAAGCTGACAGAGAAGGTCTGCGAAGACGAAATAAAGAATGGTGCAGTGGATATGGCTATTGATACCGGCTGCGGTGGTGATTCCGTGAATGAAGATGAACCTAAGCAGGAGGAACAGCCTTTGGTGAAACTAGAAATCCTCAATTTGATTGAAAAGGGTGATAAGGTGGAATGTGAGGCGAATGAAAAGCCACAGAGGCGGTACACTCGGTCAGCATTGAAGCTTAAAAGCCAAGTGGCTGAGTCTATCTTGAAGGTCAGTGAAGATGAAATGAAGAATGGTGTAGTGGATATGGCTATTGATGATGAACCCAATACCGGTAGTGTTGGTGATTCTGTGGCTGAAGACGAGACTAGGCAGGAGGAATTGAAGAAGAGTGAATCTGAACAGCCTTTGGTGAAACTAGAAATCCTCGATTTGATTGAAAAGGGTGATAAGGTGGAATGTGAGGCGAATGAAAAGCCGCAGAGGAGGTTCACTCGGTCAACATTGAACACAGAGAATGAAGCCCTAGACTTCAATTCGGTTTCCCAGAAAAGCACACCAGCTGAGGTTGAGATGAAAATGCGGAAGACTGTGAAAAAGTTTAGACTGTTAGAGCTTCTTGAAACTGGTATTCTCGAGGGGCAGCGGGTGACTTACCTTAAAGGATCAAGGGGAAGAAAAACTGCAGAGAAAGGGCTTACAGGAGTGATTACTGGTTCTGGTATAATGTGTCACTGTGAGCGATGCAATGGAACTGATGGTGTTTCACCAGCTATTTTTGAGTTGCATGCTGAAAGCACAAATAAACGTCCTCCTGAGTACATATATCTTGAGAACGGGAAGACCCTTCGGGATGTCCTAACTGCATGCAATTCTTCATTGGAAACCTTGGAAGAAGCTGTCCGGCTCGCTGTTGGTTGCTCATCTATAAAGACGTGTACCATCTGCCTCAATTGCAAAGGATCTATTTGCAAAGATGATACTAGATCAGCAATGCTTCTTTGTTGCTCCTGCTTGGACTTGAAAGAGACCCAAGCTAAGTTATCTGTAGCTGCGAAACCTTCTGAAGTTGCAAACGATTGTTCTGAATTACCAAAGCCGGTTTCAGTTGCAAACTGTCCTGACACCATTCCAGAGTGTCCTGACATTGTCCTAGAGTGCCCTAACGCCATTTCAAGGTGTCATGATACTGTTTCAAAGTGTCTCGGTACCATTTCAAATTGCCCTGATTCTTCTCCTAAGTGTCCTGATACTGTGCTGAAGAGTAGGTCGTCAGCAAGTAAGAGTCGAGGAAAAGTAACCAGAAAGGATACCGGGATGCACAAGTTGGTTTTTGAGGATGATTTTTTACCGGATGGAACTGAAGTAGTTTATGTTTCGGGTGGACAGAGACGGGCTGTCGGCTATAAAAAGGGGTCTGGCATCATGTGTAGTTGCTGCAATACAGAGGTCAGTCCCTCGCAGTTTGAAGCCCATGCTGGCTGTTCATCACGTCGCAAACCCTACCACAACATTTTCATATCTAATGGGGTATCTCTTCACGAGTTGGCATTAAAGCTTTTCTGCAGAAAAGGAGGAAAGGTCATATGCTGTGATAGTTGCCCAAGGGTTTTTCATGCAGGGTGCCTTTCTCTACCGACTGTCCCTAATGGTACTTGGTACTGTAAACATTGCCAGACTATGTTCGATAGAGACATAGATGCAGAGCGTAATGTCAATGCTGTTGCAGCTGGAAGGGTTGCAGGAGTTGATCCTATAAAACAAATAACCAACCGATGCATTCGTATTGTCACAGCTTGCGATGAAAAGTTCGGTGGATGTGCACTGTGCAGAGGCCATGAGTTCAAAAACGAGGGTTTTGGTCCTGGGACAGTTATTTTATGCGATCAGTGTGAAAGGGAATTTCATGTCGGCTGTTTGAAGGAAAAAGGAATTGTAGATTTGAAGGAAGTTCCAAAAGAGAAGTGGTTCTGTCATCCAGATTGTCTCAGGGTTCATTCAGCTTTGCAGAAGTTGGTAGTTCATGGGCAACAGAAGCTTCCAGAGTCCCTCCTGAATGTTGTAAGGAAGAAAAAGAATGAAAAAGGTCCAGCAAAGGGGGGTCTTGATATAAAATGGAGGGTGCTTAGTGGGAAAATGTCTAATGATGATGAAAGTTTACAGTTGCTTTCCAAGGCTCTTGCCATATTTCATGATCAATTTGCTCCCATTGTTGATAAGGAATCAGGCCTCGACTTCATTAGGGAAATGCTTTATGGAGGGGCCATAAAGACTCAAGATTTTGCTGGGATGTACTGTGCTATAGTTACACTCAACGAATCGGTCGTGTCAGCTGCTATGTTTCGTATCTATGGGACGGATGTGGCAGAGCTTCCTCTAGTGGCAACAAGTGCTGATTGCCAAGGACAGGGTTACTTTCAGACCTTATTTTCATGTATTGAGAGGCTTCTTGCATTTCTAAACGTGAAAATTCTTCTGCTGCCTGCTGCTGATAAGGCAGCATCCATTGGACAAAAAAATTTGATACACGAGTACAGGAAACGTTACCCAATACTGATTTTCCATGGGACATCAGTGCTGCAGAAGTCAGTCCCCAAGCGCAGAGTACCTGGTTCACAGGAGAGTAAGGTGAAGGCGAAGGTTGAATCATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

1089

Amino Acids

119.86

Weight (kDa)

5.87

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	440 - 495	6e-13	Tify domain binding domain
TDBD	PF16135	676 - 721	7.7e-16	Tify domain binding domain
PHD	PF00628	726 - 763	1.4e-06	PHD-finger
IDM1_C	PF23209	939 - 1068	2e-38	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27980
fragaria_vesca	FvH4_3g30510 FvH4_3g30510 FvH4_3g30510
malus_domestica	MD03G1127900.v1.1 MD11G1149500.v1.1
prunus_persica	Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1
pyrus_communis	pycom11g12240
rosa_chinensis	RchiOBHm_Chr5g0056471
rosa_laevigata	RLG00000035101
rosa_multiflora	Rmu_sc0002761.1_g000015
rosa_roxburghii	Rroxscaffold_1G00023850
rosa_rugosa	Rorug05G0300200
rosa_samantha	Rh5AG370700 Rh5BG382000 Rh5CG405100 Rh5DG394900
rosa_wichuraiana	Rw5G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1823
AccB1I	GGYRCC	2 cut(s)	1823, 2238
AccII	CGCG	1 cut(s)	66
AclI	AACGTT	2 cut(s)	414, 3157
AclWI	GGATC	4 cut(s)	315, 1288, 1585, 2360
AcoI	YGGCCR	1 cut(s)	50
AcsI	RAATTY	3 cut(s)	2516, 3084, 3133
AcuI	CTGAAG	5 cut(s)	80, 993, 1701, 1895, 1998
AfiI	CCNNNNNNNGG	8 cut(s)	121, 126, 230, 343, 947, 1791, 2711, 3022
AflIII	ACRYGT	1 cut(s)	1550
AgeI	ACCGGT	1 cut(s)	947
AhdI	GACNNNNNGTC	1 cut(s)	2012
AjiI	CACGTC	2 cut(s)	1551, 2108
AjnI	CCWGG	3 cut(s)	125, 2479, 3223
AjuI	GAANNNNNNNTTGG	2 cut(s)	1702, 1734
Alw21I	GWGCWC	1 cut(s)	2440
Alw26I	GTCTC	8 cut(s)	45, 103, 974, 1637, 1823, 1999, 2301, 2606
Alw44I	GTGCAC	1 cut(s)	2436
AlwI	GGATC	4 cut(s)	315, 1288, 1585, 2360
Ama87I	CYCGRG	3 cut(s)	42, 120, 1250
AoxI	GGCC	7 cut(s)	50, 112, 123, 132, 2449, 2842, 2877
ApaLI	GTGCAC	1 cut(s)	2436
ApoI	RAATTY	3 cut(s)	2516, 3084, 3133
AsiGI	ACCGGT	1 cut(s)	947
Asp700I	GAANNNNTTC	2 cut(s)	16, 2582
Asp718I	GGTACC	1 cut(s)	1823
AspLEI	GCGC	2 cut(s)	66, 3216
AspS9I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2477, 2702, 2877
AsuC2I	CCSGG	4 cut(s)	54, 121, 122, 1930
AvaI	CYCGRG	3 cut(s)	42, 120, 1250
AvaII	GGWCC	4 cut(s)	46, 117, 2477, 2702
BaeGI	GKGCMC	2 cut(s)	1778, 2440
BaeI	ACNNNNGTAYC	2 cut(s)	3131, 3164
BanI	GGYRCC	2 cut(s)	1823, 2238
BauI	CACGAG	2 cut(s)	2156, 3143
BbsI	GAAGAC	5 cut(s)	369, 660, 981, 1208, 1463
Bbv12I	GWGCWC	1 cut(s)	2440
BbvCI	CCTCAGC	2 cut(s)	578, 1179
BccI	CCATC	5 cut(s)	385, 457, 1367, 1565, 1964
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	3 cut(s)	127, 2481, 3225
BciVI	GTATCC	1 cut(s)	1918
BclI	TGATCA	1 cut(s)	2809
BcnI	CCSGG	4 cut(s)	54, 121, 122, 1930
BcoDI	GTCTC	8 cut(s)	45, 103, 974, 1637, 1823, 1999, 2301, 2606
BfaI	CTAG	8 cut(s)	330, 761, 984, 1034, 1142, 1599, 1769, 2993
BfmI	CTRYAG	5 cut(s)	1299, 1662, 2179, 2916, 3194
BfuI	GTATCC	1 cut(s)	1918
BglI	GCCNNNNNGGC	2 cut(s)	131, 826
BlpI	GCTNAGC	2 cut(s)	444, 624
Bme1390I	CCNGG	7 cut(s)	54, 121, 122, 127, 1930, 2481, 3225
Bme18I	GGWCC	4 cut(s)	46, 117, 2477, 2702
BmeRI	GACNNNNNGTC	1 cut(s)	2012
BmeT110I	CYCGRG	3 cut(s)	42, 120, 1250
BmgBI	CACGTC	2 cut(s)	1551, 2108
BmgT120I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2477, 2702, 2877
BmiI	GGNNCC	7 cut(s)	47, 119, 471, 513, 1825, 2240, 2878
BmrFI	CCNGG	7 cut(s)	54, 121, 122, 127, 1930, 2481, 3225
BmsI	GCATC	8 cut(s)	277, 608, 1349, 1923, 2046, 2305, 2381, 3125
BpiI	GAAGAC	5 cut(s)	369, 660, 981, 1208, 1463
BplI	GAGNNNNNCTC	4 cut(s)	574, 606, 1093, 1125
Bpu10I	CCTNAGC	5 cut(s)	87, 578, 630, 732, 1179
Bpu1102I	GCTNAGC	2 cut(s)	444, 624
BpuEI	CTTGAG	2 cut(s)	1466, 2874
BpuMI	CCSGG	4 cut(s)	54, 121, 122, 1930
BsaI	GGTCTC	3 cut(s)	45, 103, 1637
BsaJI	CCNNGG	8 cut(s)	53, 120, 1503, 2219, 2480, 2787, 3016, 3178
BsaWI	WCCGGW	3 cut(s)	514, 947, 1966
BsaXI	ACNNNNNCTCC	2 cut(s)	2181, 2211
Bsc4I	CCNNNNNNNGG	8 cut(s)	121, 126, 230, 343, 947, 1791, 2711, 3022
Bse118I	RCCGGY	5 cut(s)	148, 223, 695, 947, 1714
Bse1I	ACTGG	2 cut(s)	1246, 1333
Bse3DI	GCAATG	3 cut(s)	1369, 1614, 2284
BseBI	CCWGG	3 cut(s)	127, 2481, 3225
BseDI	CCNNGG	8 cut(s)	53, 120, 1503, 2219, 2480, 2787, 3016, 3178
BseGI	GGATG	9 cut(s)	1474, 1938, 1960, 1975, 2438, 2590, 2910, 2980, 3116
BseLI	CCNNNNNNNGG	8 cut(s)	121, 126, 230, 343, 947, 1791, 2711, 3022
BseMI	GCAATG	3 cut(s)	1369, 1614, 2284
BseMII	CTCAG	7 cut(s)	101, 569, 615, 861, 1170, 1422, 2617
BseNI	ACTGG	2 cut(s)	1246, 1333
BseRI	GAGGAG	5 cut(s)	227, 230, 482, 595, 1114
BseSI	GKGCMC	2 cut(s)	1778, 2440
BseX3I	CGGCCG	1 cut(s)	50
BseYI	CCCAGC	1 cut(s)	2900
BsgI	GTGCAG	2 cut(s)	693, 2464
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	3 cut(s)	53, 596, 2940
BshFI	GGCC	7 cut(s)	52, 114, 125, 134, 2451, 2844, 2879
BshNI	GGYRCC	2 cut(s)	1823, 2238
BshTI	ACCGGT	1 cut(s)	947
BsiEI	CGRYCG	3 cut(s)	53, 596, 2940
BsiHKAI	GWGCWC	1 cut(s)	2440
BsiHKCI	CYCGRG	3 cut(s)	42, 120, 1250
BslFI	GGGAC	7 cut(s)	2055, 2243, 2497, 2647, 2983, 3191, 3196
BslI	CCNNNNNNNGG	8 cut(s)	121, 126, 230, 343, 947, 1791, 2711, 3022
BsmAI	GTCTC	8 cut(s)	45, 103, 974, 1637, 1823, 1999, 2301, 2606
BsmBI	CGTCTC	1 cut(s)	1999
BsmFI	GGGAC	7 cut(s)	2055, 2243, 2497, 2647, 2983, 3191, 3196
BsmI	GAATGC	1 cut(s)	2394
BsnI	GGCC	7 cut(s)	52, 114, 125, 134, 2451, 2844, 2879
Bso31I	GGTCTC	3 cut(s)	45, 103, 1637
BsoBI	CYCGRG	3 cut(s)	42, 120, 1250
Bsp1286I	GDGCHC	2 cut(s)	1778, 2440
Bsp143I	GATC	7 cut(s)	307, 1280, 1577, 1601, 2365, 2500, 2809
Bsp1720I	GCTNAGC	2 cut(s)	444, 624
Bsp19I	CCATGG	1 cut(s)	3178
BspANI	GGCC	7 cut(s)	52, 114, 125, 134, 2451, 2844, 2879
BspCNI	CTCAG	7 cut(s)	100, 570, 616, 862, 1171, 1423, 2616
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	2 cut(s)	1798, 2806
BspLI	GGNNCC	7 cut(s)	47, 119, 471, 513, 1825, 2240, 2878
BspMAI	CTGCAG	3 cut(s)	1303, 2183, 3198
BspPI	GGATC	4 cut(s)	315, 1288, 1585, 2360
BspQI	GCTCTTC	2 cut(s)	287, 605
BspT107I	GGYRCC	2 cut(s)	1823, 2238
BspTNI	GGTCTC	3 cut(s)	45, 103, 1637
BsrDI	GCAATG	3 cut(s)	1369, 1614, 2284
BsrFI	RCCGGY	5 cut(s)	148, 223, 695, 947, 1714
BsrI	ACTGG	2 cut(s)	1246, 1333
BssAI	RCCGGY	5 cut(s)	148, 223, 695, 947, 1714
BssECI	CCNNGG	8 cut(s)	53, 120, 1503, 2219, 2480, 2787, 3016, 3178
BssMI	GATC	7 cut(s)	307, 1280, 1577, 1601, 2365, 2500, 2809
BssSI	CACGAG	2 cut(s)	2156, 3143
BssT1I	CCWWGG	5 cut(s)	1503, 2219, 2787, 3016, 3178
Bst2BI	CACGAG	2 cut(s)	2156, 3143
Bst2UI	CCWGG	3 cut(s)	127, 2481, 3225
Bst6I	CTCTTC	5 cut(s)	287, 605, 998, 1871, 2157
BstAPI	GCANNNNNTGC	1 cut(s)	3005
BstC8I	GCNNGC	7 cut(s)	194, 1404, 1483, 1524, 2095, 2413, 3099
BstDSI	CCRYGG	1 cut(s)	3178
BstEII	GGTNACC	1 cut(s)	355
BstF5I	GGATG	9 cut(s)	1474, 1938, 1960, 1975, 2438, 2590, 2910, 2980, 3116
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	2 cut(s)	66, 3216
BstKTI	GATC	7 cut(s)	310, 1283, 1580, 1604, 2368, 2503, 2812
BstMAI	GTCTC	8 cut(s)	45, 103, 974, 1637, 1823, 1999, 2301, 2606
BstMBI	GATC	7 cut(s)	307, 1280, 1577, 1601, 2365, 2500, 2809
BstMCI	CGRYCG	3 cut(s)	53, 596, 2940
BstMWI	GCNNNNNNNGC	8 cut(s)	131, 478, 826, 1569, 2342, 2650, 3005, 3110
BstNI	CCWGG	3 cut(s)	127, 2481, 3225
BstNSI	RCATGY	2 cut(s)	1406, 1485
BstPI	GGTNACC	1 cut(s)	355
BstSCI	CCNGG	7 cut(s)	52, 119, 120, 125, 1928, 2479, 3223
BstSFI	CTRYAG	5 cut(s)	1299, 1662, 2179, 2916, 3194
BstSLI	GKGCMC	2 cut(s)	1778, 2440
BstUI	CGCG	1 cut(s)	66
BstV2I	GAAGAC	5 cut(s)	369, 660, 981, 1208, 1463
BstX2I	RGATCY	2 cut(s)	307, 1577
BstYI	RGATCY	2 cut(s)	307, 1577
BstZI	CGGCCG	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	1918
BsuRI	GGCC	7 cut(s)	52, 114, 125, 134, 2451, 2844, 2879
BtgI	CCRYGG	1 cut(s)	3178
BtgZI	GCGATG	3 cut(s)	312, 1372, 2430
BtrI	CACGTC	2 cut(s)	1551, 2108
BtsCI	GGATG	9 cut(s)	1474, 1938, 1960, 1975, 2438, 2590, 2910, 2980, 3116
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	6 cut(s)	681, 895, 1348, 2438, 2510, 3195
Cac8I	GCNNGC	7 cut(s)	194, 1404, 1483, 1524, 2095, 2413, 3099
CciI	TCATGA	2 cut(s)	1798, 2806
CfoI	GCGC	2 cut(s)	66, 3216
Cfr10I	RCCGGY	5 cut(s)	148, 223, 695, 947, 1714
Cfr13I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2477, 2702, 2877
Cfr9I	CCCGGG	1 cut(s)	120
CsiI	ACCWGGT	1 cut(s)	3223
CspAI	ACCGGT	1 cut(s)	947
DpnI	GATC	7 cut(s)	309, 1282, 1579, 1603, 2367, 2502, 2811
DpnII	GATC	7 cut(s)	307, 1280, 1577, 1601, 2365, 2500, 2809
DriI	GACNNNNNGTC	1 cut(s)	2012
EaeI	YGGCCR	1 cut(s)	50
EagI	CGGCCG	1 cut(s)	50
Eam1104I	CTCTTC	5 cut(s)	287, 605, 998, 1871, 2157
Eam1105I	GACNNNNNGTC	1 cut(s)	2012
EarI	CTCTTC	5 cut(s)	287, 605, 998, 1871, 2157
EciI	GGCGGA	3 cut(s)	107, 359, 622
EclXI	CGGCCG	1 cut(s)	50
Eco130I	CCWWGG	5 cut(s)	1503, 2219, 2787, 3016, 3178
Eco147I	AGGCCT	1 cut(s)	2844
Eco31I	GGTCTC	3 cut(s)	45, 103, 1637
Eco47I	GGWCC	4 cut(s)	46, 117, 2477, 2702
Eco52I	CGGCCG	1 cut(s)	50
Eco57I	CTGAAG	5 cut(s)	80, 993, 1701, 1895, 1998
Eco88I	CYCGRG	3 cut(s)	42, 120, 1250
Eco91I	GGTNACC	1 cut(s)	355
EcoO65I	GGTNACC	1 cut(s)	355
EcoRII	CCWGG	3 cut(s)	125, 2479, 3223
EcoT14I	CCWWGG	5 cut(s)	1503, 2219, 2787, 3016, 3178
EcoT22I	ATGCAT	1 cut(s)	2396
ErhI	CCWWGG	5 cut(s)	1503, 2219, 2787, 3016, 3178
Esp3I	CGTCTC	1 cut(s)	1999
FaqI	GGGAC	7 cut(s)	2055, 2243, 2497, 2647, 2983, 3191, 3196
FauI	CCCGC	1 cut(s)	1254
FauNDI	CATATG	1 cut(s)	2201
FbaI	TGATCA	1 cut(s)	2809
FokI	GGATG	9 cut(s)	1481, 1945, 1967, 1982, 2445, 2577, 2917, 2987, 3103
FspBI	CTAG	8 cut(s)	330, 761, 984, 1034, 1142, 1599, 1769, 2993
GlaI	GCGC	2 cut(s)	65, 3215
GsaI	CCCAGC	1 cut(s)	2904
HaeIII	GGCC	7 cut(s)	52, 114, 125, 134, 2451, 2844, 2879
HhaI	GCGC	2 cut(s)	66, 3216
Hin6I	GCGC	2 cut(s)	64, 3214
HinP1I	GCGC	2 cut(s)	64, 3214
HincII	GTYRAC	1 cut(s)	1116
HindII	GTYRAC	1 cut(s)	1116
HindIII	AAGCTT	3 cut(s)	851, 2171, 2651
Hpy188I	TCNGA	5 cut(s)	22, 1015, 1681, 1702, 3036
Hpy99I	CGWCG	5 cut(s)	26, 212, 323, 326, 2112
HpyCH4IV	ACGT	6 cut(s)	414, 1423, 1550, 2107, 3078, 3157
HpyF10VI	GCNNNNNNNGC	8 cut(s)	131, 478, 826, 1569, 2342, 2650, 3005, 3110
HpySE526I	ACGT	6 cut(s)	414, 1423, 1550, 2107, 3078, 3157
HspAI	GCGC	2 cut(s)	64, 3214
KpnI	GGTACC	1 cut(s)	1827
Ksp22I	TGATCA	1 cut(s)	2809
Kzo9I	GATC	7 cut(s)	307, 1280, 1577, 1601, 2365, 2500, 2809
LguI	GCTCTTC	2 cut(s)	287, 605
LmnI	GCTCC	4 cut(s)	451, 469, 1628, 2824
LweI	GCATC	8 cut(s)	277, 608, 1349, 1923, 2046, 2305, 2381, 3125
MabI	ACCWGGT	1 cut(s)	3223
MaeI	CTAG	8 cut(s)	330, 761, 984, 1034, 1142, 1599, 1769, 2993
MaeII	ACGT	6 cut(s)	414, 1423, 1550, 2107, 3078, 3157
MaeIII	GTNAC	8 cut(s)	355, 1264, 1346, 1912, 2404, 2920, 3026, 3158
MalI	GATC	7 cut(s)	309, 1282, 1579, 1603, 2367, 2502, 2811
MboI	GATC	7 cut(s)	307, 1280, 1577, 1601, 2365, 2500, 2809
MfeI	CAATTG	2 cut(s)	455, 1567
MflI	RGATCY	2 cut(s)	307, 1577
MhlI	GDGCHC	2 cut(s)	1778, 2440
MlyI	GAGTC	5 cut(s)	356, 881, 1909, 2669, 2881
MmeI	TCCRAC	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	2396
MroXI	GAANNNNTTC	2 cut(s)	16, 2582
MseI	TTAA	3 cut(s)	855, 1275, 2168
MspA1I	CMGCKG	5 cut(s)	577, 1178, 1261, 2345, 2948
MspR9I	CCNGG	7 cut(s)	54, 121, 122, 127, 1930, 2481, 3225
MunI	CAATTG	2 cut(s)	455, 1567
Mva1269I	GAATGC	1 cut(s)	2394
MvaI	CCWGG	3 cut(s)	127, 2481, 3225
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	8 cut(s)	131, 478, 826, 1569, 2342, 2650, 3005, 3110
NciI	CCSGG	4 cut(s)	54, 121, 122, 1930
NcoI	CCATGG	1 cut(s)	3178
NdeI	CATATG	1 cut(s)	2201
NdeII	GATC	7 cut(s)	307, 1280, 1577, 1601, 2365, 2500, 2809
NlaIV	GGNNCC	7 cut(s)	47, 119, 471, 513, 1825, 2240, 2878
NmuCI	GTSAC	4 cut(s)	355, 1264, 1346, 2404
NsiI	ATGCAT	1 cut(s)	2396
NspI	RCATGY	2 cut(s)	1406, 1485
PaeI	GCATGC	2 cut(s)	1406, 1485
PaeR7I	CTCGAG	1 cut(s)	1250
PagI	TCATGA	2 cut(s)	1798, 2806
PceI	AGGCCT	1 cut(s)	2844
PciSI	GCTCTTC	2 cut(s)	287, 605
PcsI	WCGNNNNNNNCGW	1 cut(s)	2937
PctI	GAATGC	1 cut(s)	2394
PdmI	GAANNNNTTC	2 cut(s)	16, 2582
PfeI	GAWTC	9 cut(s)	17, 485, 710, 962, 1010, 1844, 2837, 2933, 3260
PflFI	GACNNNGTC	1 cut(s)	1763
PinAI	ACCGGT	1 cut(s)	947
PleI	GAGTC	5 cut(s)	355, 880, 1908, 2668, 2881
PpsI	GAGTC	5 cut(s)	355, 880, 1908, 2668, 2881
Psp1406I	AACGTT	2 cut(s)	414, 3157
Psp6I	CCWGG	3 cut(s)	125, 2479, 3223
PspEI	GGTNACC	1 cut(s)	355
PspFI	CCCAGC	1 cut(s)	2900
PspGI	CCWGG	3 cut(s)	125, 2479, 3223
PspN4I	GGNNCC	7 cut(s)	47, 119, 471, 513, 1825, 2240, 2878
PspPI	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2477, 2702, 2877
PstI	CTGCAG	3 cut(s)	1303, 2183, 3198
PsuI	RGATCY	2 cut(s)	307, 1577
PsyI	GACNNNGTC	1 cut(s)	1763
PvuII	CAGCTG	3 cut(s)	1178, 2345, 2948
SapI	GCTCTTC	2 cut(s)	287, 605
SaqAI	TTAA	3 cut(s)	855, 1275, 2168
Sau3AI	GATC	7 cut(s)	307, 1280, 1577, 1601, 2365, 2500, 2809
Sau96I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2477, 2702, 2877
SchI	GAGTC	5 cut(s)	356, 881, 1909, 2669, 2881
ScrFI	CCNGG	7 cut(s)	54, 121, 122, 127, 1930, 2481, 3225
SduI	GDGCHC	2 cut(s)	1778, 2440
SexAI	ACCWGGT	1 cut(s)	3223
SfaNI	GCATC	8 cut(s)	277, 608, 1349, 1923, 2046, 2305, 2381, 3125
SfcI	CTRYAG	5 cut(s)	1299, 1662, 2179, 2916, 3194
SfiI	GGCCNNNNNGGCC	1 cut(s)	131
Sfr274I	CTCGAG	1 cut(s)	1250
SinI	GGWCC	4 cut(s)	46, 117, 2477, 2702
SlaI	CTCGAG	1 cut(s)	1250
SmaI	CCCGGG	1 cut(s)	122
SmlI	CTYRAG	3 cut(s)	1250, 1445, 2889
SmoI	CTYRAG	3 cut(s)	1250, 1445, 2889
SphI	GCATGC	2 cut(s)	1406, 1485
SseBI	AGGCCT	1 cut(s)	2844
SspMI	CTAG	8 cut(s)	330, 761, 984, 1034, 1142, 1599, 1769, 2993
StuI	AGGCCT	1 cut(s)	2844
StyD4I	CCNGG	7 cut(s)	52, 119, 120, 125, 1928, 2479, 3223
StyI	CCWWGG	5 cut(s)	1503, 2219, 2787, 3016, 3178
TaiI	ACGT	6 cut(s)	417, 1426, 1553, 2110, 3081, 3160
TaqI	TCGA	8 cut(s)	488, 530, 602, 1044, 1251, 1903, 2301, 2847
TaqII	GACCGA	4 cut(s)	582, 828, 1101, 2926
TatI	WGTACW	3 cut(s)	1434, 2907, 3147
TauI	GCSGC	3 cut(s)	199, 577, 1096
TfiI	GAWTC	9 cut(s)	17, 485, 710, 962, 1010, 1844, 2837, 2933, 3260
Tru1I	TTAA	3 cut(s)	855, 1275, 2168
Tru9I	TTAA	3 cut(s)	855, 1275, 2168
TscAI	CASTG	6 cut(s)	681, 895, 1355, 2445, 2510, 3195
TseFI	GTSAC	4 cut(s)	355, 1264, 1346, 2404
Tsp45I	GTSAC	4 cut(s)	355, 1264, 1346, 2404
TspGWI	ACGGA	4 cut(s)	24, 29, 703, 2987
TspMI	CCCGGG	1 cut(s)	120
TspRI	CASTG	6 cut(s)	681, 895, 1355, 2445, 2510, 3195
Tth111I	GACNNNGTC	1 cut(s)	1763
VneI	GTGCAC	1 cut(s)	2436
VpaK11BI	GGWCC	4 cut(s)	46, 117, 2477, 2702
XapI	RAATTY	3 cut(s)	2516, 3084, 3133
XceI	RCATGY	2 cut(s)	1406, 1485
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2577
XhoI	CTCGAG	1 cut(s)	1250
XmaI	CCCGGG	1 cut(s)	120
XmnI	GAANNNNTTC	2 cut(s)	16, 2582
XspI	CTAG	8 cut(s)	330, 761, 984, 1034, 1142, 1599, 1769, 2993
Zsp2I	ATGCAT	1 cut(s)	2396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.