Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0010740

Physical Location & Seq

Genomic Coordinates Forward (+)

23802478 .. 23809742

Gene Structure 7265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g30510.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3348 bp

ATGGCGAACGGGACAGGTTCCGACGAGTTCGTGGTGCGGTCTCGCGTCCGGCAAGGGCTGAAGCGCGAATTGACCTTTGCATTGTCTCAGGTGGATGTCTGTTGTTCGTTGGGCCGGACCCGGGCCAGGAAGCCCCAGATTGAGGCTCCGGAGAATGTGAACCGTAAGAGATTGAAGAAGGCGACGAAAACCGAGGAGGAGAAGGCGGCGAGCGGCGGCGAGAATGTGAAAGGTGTTGAGGATTTGGTGGAGGCTGTAAGCGAAGAAGACGATGCGAAAAGCGATGTGGTGGATCTTATGAGCGATGATGAGCCGAGAAGCCATGTGGCTGAGTCTGCGGTGAAGGAGAAGGTCACCGGAGAGGAGTTGAAGAACGGTGTTGTAGAGATGGATGTGGATAATGAGCAGATTGTTGGTTCTATCGGTAATGGTGATGAGGCTAAGCAGGAGCAGTTGAAGAAGAATGAGCCGGAAAAGCCAGATTTGGTGGAAGGAGAGGTGATTGTGGTGGAGAAGCCGATTATGAGGTACAGTCGGTTGGCATCGAGGCGAAAGAGCCAAGTGGCTGAGTCTAAGCTGGCAGAGAAGGTCAACGGAGACGAGATGAAGACTGGTGCGGTGGACATGGCTGTTGGGAATGAAACCAATGCCGGTTGTGGGGGTGAGTCGGTGAAGGGGGATGAGTCTAAGCAGGAGGAATTGAAGAAGAGTGAGTCTGAGCAGCCTTTGGTGAAACTAGACATTCTTAATTTGAGTGAGAAGGGTGATAAGGCGGAATGCGAGGTGAGTGAAAAGCCGATTAGGCAGTATGCTCGGTCGGCATTGAAGCTTAAGAGCCACCAAGTGGCTGAAGATGAATTGAAGAATGGTGCAGCGGATATGGCTATTGATGACGAACCCAATGCCGGTGGTGCTGGTGATTCTGTGACTGAAGATGAGCCTAAGCAGGAGGAATTGAAAAAGAGTGAACCTGAACAGCCTTTGGTGAGATTAGAAATACTCGATTTGATTGAAAAGGGTGATAAGATGGACTGTGAGGTGAGTGTAAAGCCGCAGAGGAGGTTTACTCGGTCTGCATTGAATGCAGAGAATGAAGCCCTAGACTTAGATACAGTCTCACAGAAAAGCTCGTCAGTTGAGGTTGAGATGAAAATGTCGAAGACTGTGAAGAAGTTTAAGTTGTCGGAGCTCCTTGAAACTGGTATTCTCGAGGGGCAGCCAGTGACTTACCGTAAAGTATCAAAGGGGAGTTTTACTGCGGAGAAAGGGCATACAGGAGTGATTACTGGTTCTCATATATTGTGTCACTGTGAGCGATGCAATGGAACTGATGTTGTTTCACCAGCTATTTTTGAGTTGCATGCTGAAAGCACAAATAAACGGCCTCCTGAGTACATATATCTTGAGAATGGTAACACCCTTCGGGATGTCCTTACAGCATGCGATTCTTCATTGGAAACCTTGGAAGAAGCTGTCCGGCTTGCTGTTGGTTGCTCATCAATAAAGACTTGTACCATCTGCCTCAATTGCAAAGGATCTATGTGCCAAGATGAGACTACACCAGCAATGCTTCTTTGTGGCTCCTGCTTGGAGTTAAAAGAGACCCAAGCTAAATTTTCTGTAGCTGAGAAGCCTTCTGAGGCTGCAAATGATTCCTCTGAATTACCAAAGCTGGTTTCAGTTGCAACCTCTCCTGATCCTGTGACAAAGTGTCCCGACACCATCCCAGAGTGTCCGGACACCATTCCACAGTGTCCTGACATCATTTCTAGGTGTCATGAAACTGTTTCTAAGCTTCCCGGTACCATCTCAGAATGCCCTGATTCCTCTTCTAAGTGTCCTGATACTGTGCTAAAGAGCAGTTCGTCAGCAAGTAAGAGTCGAGGAAGAGTAACCAAAAAGGATATCGGAATGCATAAGTTGGTTTTTGAGGTCTTGGAAGATGGAACCGAACTATCTTATATTCATAATGGACAGAAACTGGCTTTCGGCTATAAAAAGGGGTCTGGCATCGTGTGTAAATGCCATGATCAAGAGGTCAGCCCCTCGCAGTTTGAAGCCCATGCTGGCTGTTCATCCCGTCGTAAACCCTACCATAACATTTTCATATCTAATGGGATATCTCTTCACGAGTTGGCATTAGAGCTTTCAAAAAACCGGAAGTTCTCTACTGAGGACAGTGATGACCTTTGCCAGATCTGCAAGAAAGGAGGAAAAGTCATATGCTGCCATAGTTGCCCAAGGGTTTACCATGCAGGGTGCCTTTCTCTACCAACTGTCCCTAATGGTAGTTGGTACTGTAATCATTGCCAGACTATGTTTGATAAACAGAAAGATGCGGATAATCATGTCAATGCTGTTGCAGCCGGAAGGGTTCCAGGAGTTGATCCTATGGAACAAATAACCAATCGATGCATCCGTATCATCACAACTTGCGATGAAAAGTTTGGTGGATGTTCACTGTGCAGTGGCCATGATTTCAAAGACGAGGGGTTTGGTCCTGGCACAGTTATTTTATGTGATCAGCTGCAGTGTGAAAGGGAATTTCATGTCGGCTGTTTAAAGGAAAAAGGAATCGTTGATTTGAAGGAAGTTCCAAAAGACAAGTGGTTTTGTCATCCAGCTTGTCTCAGGAATTATTCAGCTTTGCAGAAGTTGGTAGTTCATGGACAACAAAAGCTTCCAGACTCCCTTCTGAATATTATTAAGGAGAAACACAGTGAAAGAGGTCCAGCAAATGGGGGTCTTGATGTAAAATGGAGGGTGCTTAGTGGGAAAACATCCACTGGTGCTGAAAGTTTAGAGTTGCTTTCTAAGGCCCTTGCCATCTTTCATGATCAATTTGCTCCTATTGTTGATAAGGAATCAGGCCTCGACTTCATTAAGGAAATGCTTTATGGAGGTGCCATAAAGACTCAAGAATTTGGTGGGATGCACTGTGCAATAATTACAGTCAATGAATCGGTCGTGTCAGCTGCTATGTTTCGTATCTATGGGACAGATGTGGCAGAGCTTCCTCTAGTTGCAACAAGTGCTGATTGCCAAGGACAGGGTTACTTCCAAACCTTATTCGCATGTATTGAGAGGTTTCTTGCATTCCTATATGTGAAAGTTCTTCTGCTGCCTGCTGCTGAGGAGGCAGCATCCATATGGACAAAAAAGTTTGGTTTTCAGAGTCTAAACCAGAGTGAGATACATGAGTATAGGAAACGTTACCCAATACTGATTTTCGATGGAACATCAGTGCTGAAGAAGTCAGTCCCCAGGTGCAGAATCGTTGGTTCACAGGAGGGGCTCCCATGTTTCTTGATGTACAGAAGATACAGCTTATCTATACAGGCATGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

1116

Amino Acids

122.36

Weight (kDa)

5.58

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	426 - 481	3.3e-13	Tify domain binding domain
TDBD	PF16135	667 - 713	1.8e-15	Tify domain binding domain
PHD-1st_NSD	PF23011	728 - 771	5.1e-07	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD	PF00628	731 - 770	3e-06	PHD-finger
IDM1_C	PF23209	948 - 1086	2.9e-49	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27980
fragaria_vesca	FvH4_3g30510 FvH4_3g30510 FvH4_3g30510
malus_domestica	MD03G1127900.v1.1 MD11G1149500.v1.1
prunus_persica	Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1
pyrus_communis	pycom11g12240
rosa_chinensis	RchiOBHm_Chr5g0056471
rosa_laevigata	RLG00000035101
rosa_multiflora	Rmu_sc0002761.1_g000015
rosa_roxburghii	Rroxscaffold_1G00023850
rosa_rugosa	Rorug05G0300200
rosa_samantha	Rh5AG370700 Rh5BG382000 Rh5CG405100 Rh5DG394900
rosa_wichuraiana	Rw5G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1802
AccB1I	GGYRCC	3 cut(s)	1802, 2259, 2903
AccB7I	CCANNNNNTGG	2 cut(s)	844, 2738
AccBSI	CCGCTC	1 cut(s)	213
AccII	CGCG	2 cut(s)	45, 66
AccIII	TCCGGA	2 cut(s)	148, 1735
AclI	AACGTT	1 cut(s)	3211
AclWI	GGATC	4 cut(s)	300, 1543, 1691, 2381
AcoI	YGGCCR	1 cut(s)	2470
AcsI	RAATTY	3 cut(s)	1613, 2543, 2921
AcuI	CTGAAG	4 cut(s)	80, 870, 951, 3269
AdeI	CACNNNGTG	1 cut(s)	844
AfaI	GTAC	6 cut(s)	530, 1394, 1513, 1804, 2297, 3314
AfiI	CCNNNNNNNGG	8 cut(s)	121, 126, 142, 657, 844, 905, 2738, 3049
AflII	CTTAAG	1 cut(s)	830
AhdI	GACNNNNNGTC	1 cut(s)	1710
AjnI	CCWGG	4 cut(s)	125, 2377, 2500, 3263
AjuI	GAANNNNNNNTTGG	2 cut(s)	1660, 1692
Alw21I	GWGCWC	1 cut(s)	1191
Alw26I	GTCTC	7 cut(s)	45, 90, 591, 1120, 1547, 1595, 2633
AlwI	GGATC	4 cut(s)	300, 1543, 1691, 2381
AlwNI	CAGNNNCTG	1 cut(s)	1981
Ama87I	CYCGRG	2 cut(s)	120, 1208
Aor13HI	TCCGGA	2 cut(s)	148, 1735
AoxI	GGCC	6 cut(s)	112, 123, 1382, 2470, 2817, 2869
ApoI	RAATTY	3 cut(s)	1613, 2543, 2921
ArsI	GACNNNNNNTTYG	2 cut(s)	2477, 2509
Asp718I	GGTACC	1 cut(s)	1802
AspLEI	GCGC	1 cut(s)	66
AspS9I	GGNCC	6 cut(s)	112, 117, 123, 2498, 2729, 2818
AsuC2I	CCSGG	3 cut(s)	121, 122, 1800
AvaI	CYCGRG	2 cut(s)	120, 1208
AvaII	GGWCC	3 cut(s)	117, 2498, 2729
BaeI	ACNNNNGTAYC	2 cut(s)	3185, 3218
BalI	TGGCCA	1 cut(s)	2472
BanI	GGYRCC	3 cut(s)	1802, 2259, 2903
BanII	GRGCYC	2 cut(s)	1191, 3297
BauI	CACGAG	1 cut(s)	2129
BbsI	GAAGAC	3 cut(s)	273, 614, 1166
Bbv12I	GWGCWC	1 cut(s)	1191
BbvCI	CCTCAGC	1 cut(s)	3132
BccI	CCATC	8 cut(s)	382, 1021, 1523, 1730, 1814, 1937, 2834, 3227
BceAI	ACGGC	1 cut(s)	1397
BcgI	CGANNNNNNTGC	4 cut(s)	794, 828, 884, 918
BciT130I	CCWGG	4 cut(s)	127, 2379, 2502, 3265
BclI	TGATCA	3 cut(s)	2029, 2521, 2836
BcnI	CCSGG	3 cut(s)	121, 122, 1800
BcoDI	GTCTC	7 cut(s)	45, 90, 591, 1120, 1547, 1595, 2633
BfaI	CTAG	4 cut(s)	737, 1100, 1770, 3020
BfmI	CTRYAG	2 cut(s)	1620, 2528
BfrI	CTTAAG	1 cut(s)	830
BglI	GCCNNNNNGGC	1 cut(s)	802
BglII	AGATCT	1 cut(s)	2196
BlpI	GCTNAGC	1 cut(s)	441
Bme1390I	CCNGG	7 cut(s)	121, 122, 127, 1800, 2379, 2502, 3265
Bme18I	GGWCC	3 cut(s)	117, 2498, 2729
BmeRI	GACNNNNNGTC	1 cut(s)	1710
BmeT110I	CYCGRG	2 cut(s)	120, 1208
BmgT120I	GGNCC	6 cut(s)	112, 117, 123, 2498, 2729, 2818
BmrFI	CCNGG	7 cut(s)	121, 122, 127, 1800, 2379, 2502, 3265
BmsI	GCATC	9 cut(s)	262, 551, 1307, 2019, 2326, 2402, 2424, 2922, 3152
BpiI	GAAGAC	3 cut(s)	273, 614, 1166
BplI	GAGNNNNNCTC	2 cut(s)	1051, 1083
Bpu10I	CCTNAGC	2 cut(s)	942, 3132
Bpu1102I	GCTNAGC	1 cut(s)	441
BpuEI	CTTGAG	2 cut(s)	1424, 2901
BpuMI	CCSGG	3 cut(s)	121, 122, 1800
Bsa29I	ATCGAT	1 cut(s)	2410
BsaI	GGTCTC	2 cut(s)	45, 1595
BsaJI	CCNNGG	6 cut(s)	120, 192, 1461, 2240, 3043, 3263
BsaWI	WCCGGW	4 cut(s)	148, 356, 1735, 2157
BsaXI	ACNNNNNCTCC	2 cut(s)	2202, 2232
Bsc4I	CCNNNNNNNGG	8 cut(s)	121, 126, 142, 657, 844, 905, 2738, 3049
Bse118I	RCCGGY	2 cut(s)	650, 905
Bse1I	ACTGG	6 cut(s)	616, 1204, 1220, 1291, 1986, 2791
Bse3DI	GCAATG	3 cut(s)	1327, 1572, 2305
BseAI	TCCGGA	2 cut(s)	148, 1735
BseBI	CCWGG	4 cut(s)	127, 2379, 2502, 3265
BseCI	ATCGAT	1 cut(s)	2410
BseDI	CCNNGG	6 cut(s)	120, 192, 1461, 2240, 3043, 3263
BseLI	CCNNNNNNNGG	8 cut(s)	121, 126, 142, 657, 844, 905, 2738, 3049
BseMI	GCAATG	3 cut(s)	1327, 1572, 2305
BseNI	ACTGG	6 cut(s)	616, 1204, 1220, 1291, 1986, 2791
BseRI	GAGGAG	5 cut(s)	209, 212, 377, 1072, 3149
BsgI	GTGCAG	3 cut(s)	891, 2485, 3289
Bsh1236I	CGCG	2 cut(s)	45, 66
Bsh1285I	CGRYCG	2 cut(s)	818, 2967
BshFI	GGCC	6 cut(s)	114, 125, 1384, 2472, 2819, 2871
BshNI	GGYRCC	3 cut(s)	1802, 2259, 2903
BshVI	ATCGAT	1 cut(s)	2410
BsiEI	CGRYCG	2 cut(s)	818, 2967
BsiHKAI	GWGCWC	1 cut(s)	1191
BsiHKCI	CYCGRG	2 cut(s)	120, 1208
BslFI	GGGAC	5 cut(s)	25, 1698, 2264, 3010, 3245
BslI	CCNNNNNNNGG	8 cut(s)	121, 126, 142, 657, 844, 905, 2738, 3049
BsmAI	GTCTC	7 cut(s)	45, 90, 591, 1120, 1547, 1595, 2633
BsmBI	CGTCTC	1 cut(s)	591
BsmFI	GGGAC	5 cut(s)	25, 1698, 2264, 3010, 3245
BsmI	GAATGC	5 cut(s)	782, 1087, 1820, 1917, 3095
BsnI	GGCC	6 cut(s)	114, 125, 1384, 2472, 2819, 2871
Bso31I	GGTCTC	2 cut(s)	45, 1595
BsoBI	CYCGRG	2 cut(s)	120, 1208
Bsp1286I	GDGCHC	2 cut(s)	1191, 3297
Bsp13I	TCCGGA	2 cut(s)	148, 1735
Bsp1407I	TGTACA	1 cut(s)	3312
Bsp143I	GATC	8 cut(s)	292, 1535, 1696, 2029, 2196, 2386, 2521, 2836
Bsp1720I	GCTNAGC	1 cut(s)	441
BspANI	GGCC	6 cut(s)	114, 125, 1384, 2472, 2819, 2871
BspDI	ATCGAT	1 cut(s)	2410
BspEI	TCCGGA	2 cut(s)	148, 1735
BspFNI	CGCG	2 cut(s)	45, 66
BspHI	TCATGA	2 cut(s)	1777, 2833
BspMAI	CTGCAG	1 cut(s)	2532
BspPI	GGATC	4 cut(s)	300, 1543, 1691, 2381
BspT107I	GGYRCC	3 cut(s)	1802, 2259, 2903
BspTI	CTTAAG	1 cut(s)	830
BspTNI	GGTCTC	2 cut(s)	45, 1595
BsrBI	CCGCTC	1 cut(s)	213
BsrDI	GCAATG	3 cut(s)	1327, 1572, 2305
BsrFI	RCCGGY	2 cut(s)	650, 905
BsrGI	TGTACA	1 cut(s)	3312
BsrI	ACTGG	6 cut(s)	616, 1204, 1220, 1291, 1986, 2791
BssAI	RCCGGY	2 cut(s)	650, 905
BssECI	CCNNGG	6 cut(s)	120, 192, 1461, 2240, 3043, 3263
BssMI	GATC	8 cut(s)	292, 1535, 1696, 2029, 2196, 2386, 2521, 2836
BssSI	CACGAG	1 cut(s)	2129
BssT1I	CCWWGG	3 cut(s)	1461, 2240, 3043
Bst2BI	CACGAG	1 cut(s)	2129
Bst2UI	CCWGG	4 cut(s)	127, 2379, 2502, 3265
Bst6I	CTCTTC	4 cut(s)	701, 1834, 1882, 2130
BstAFI	CTTAAG	1 cut(s)	830
BstAPI	GCANNNNNTGC	2 cut(s)	1082, 3032
BstAUI	TGTACA	1 cut(s)	3312
BstC8I	GCNNGC	7 cut(s)	211, 579, 1362, 1441, 1482, 2068, 3126
BstEII	GGTNACC	1 cut(s)	352
BstFNI	CGCG	2 cut(s)	45, 66
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	8 cut(s)	295, 1538, 1699, 2032, 2199, 2389, 2524, 2839
BstMAI	GTCTC	7 cut(s)	45, 90, 591, 1120, 1547, 1595, 2633
BstMBI	GATC	8 cut(s)	292, 1535, 1696, 2029, 2196, 2386, 2521, 2836
BstMCI	CGRYCG	2 cut(s)	818, 2967
BstNI	CCWGG	4 cut(s)	127, 2379, 2502, 3265
BstNSI	RCATGY	3 cut(s)	1364, 1443, 3078
BstPI	GGTNACC	1 cut(s)	352
BstSCI	CCNGG	7 cut(s)	119, 120, 125, 1798, 2377, 2500, 3263
BstSFI	CTRYAG	2 cut(s)	1620, 2528
BstUI	CGCG	2 cut(s)	45, 66
BstV2I	GAAGAC	3 cut(s)	273, 614, 1166
BstX2I	RGATCY	3 cut(s)	292, 1535, 2196
BstYI	RGATCY	3 cut(s)	292, 1535, 2196
Bsu15I	ATCGAT	1 cut(s)	2410
BsuRI	GGCC	6 cut(s)	114, 125, 1384, 2472, 2819, 2871
BsuTUI	ATCGAT	1 cut(s)	2410
BtgZI	GCGATG	4 cut(s)	297, 318, 1330, 2451
BtsI	GCAGTG	2 cut(s)	2473, 2537
Cac8I	GCNNGC	7 cut(s)	211, 579, 1362, 1441, 1482, 2068, 3126
CaiI	CAGNNNCTG	1 cut(s)	1981
CciI	TCATGA	2 cut(s)	1777, 2833
CfoI	GCGC	1 cut(s)	66
Cfr10I	RCCGGY	2 cut(s)	650, 905
Cfr13I	GGNCC	6 cut(s)	112, 117, 123, 2498, 2729, 2818
Cfr9I	CCCGGG	1 cut(s)	120
ClaI	ATCGAT	1 cut(s)	2410
CseI	GACGC	1 cut(s)	34
Csp6I	GTAC	6 cut(s)	529, 1393, 1512, 1803, 2296, 3313
CspCI	CAANNNNNGTGG	2 cut(s)	889, 924
CviQI	GTAC	6 cut(s)	529, 1393, 1512, 1803, 2296, 3313
DpnI	GATC	8 cut(s)	294, 1537, 1698, 2031, 2198, 2388, 2523, 2838
DpnII	GATC	8 cut(s)	292, 1535, 1696, 2029, 2196, 2386, 2521, 2836
DraI	TTTAAA	1 cut(s)	2562
DraIII	CACNNNGTG	1 cut(s)	844
DriI	GACNNNNNGTC	1 cut(s)	1710
EaeI	YGGCCR	1 cut(s)	2470
Eam1104I	CTCTTC	4 cut(s)	701, 1834, 1882, 2130
Eam1105I	GACNNNNNGTC	1 cut(s)	1710
EarI	CTCTTC	4 cut(s)	701, 1834, 1882, 2130
EciI	GGCGGA	1 cut(s)	788
Ecl136II	GAGCTC	1 cut(s)	1189
Eco130I	CCWWGG	3 cut(s)	1461, 2240, 3043
Eco147I	AGGCCT	1 cut(s)	2871
Eco24I	GRGCYC	2 cut(s)	1191, 3297
Eco31I	GGTCTC	2 cut(s)	45, 1595
Eco32I	GATATC	2 cut(s)	1906, 2121
Eco47I	GGWCC	3 cut(s)	117, 2498, 2729
Eco53kI	GAGCTC	1 cut(s)	1189
Eco57I	CTGAAG	4 cut(s)	80, 870, 951, 3269
Eco88I	CYCGRG	2 cut(s)	120, 1208
Eco91I	GGTNACC	1 cut(s)	352
EcoICRI	GAGCTC	1 cut(s)	1189
EcoO109I	RGGNCCY	1 cut(s)	2818
EcoO65I	GGTNACC	1 cut(s)	352
EcoRII	CCWGG	4 cut(s)	125, 2377, 2500, 3263
EcoRV	GATATC	2 cut(s)	1906, 2121
EcoT14I	CCWWGG	3 cut(s)	1461, 2240, 3043
EcoT22I	ATGCAT	2 cut(s)	1917, 2417
EcoT38I	GRGCYC	2 cut(s)	1191, 3297
ErhI	CCWWGG	3 cut(s)	1461, 2240, 3043
Esp3I	CGTCTC	1 cut(s)	591
FaqI	GGGAC	5 cut(s)	25, 1698, 2264, 3010, 3245
FauNDI	CATATG	2 cut(s)	2222, 3149
FbaI	TGATCA	3 cut(s)	2029, 2521, 2836
FriOI	GRGCYC	2 cut(s)	1191, 3297
FspBI	CTAG	4 cut(s)	737, 1100, 1770, 3020
GlaI	GCGC	1 cut(s)	65
HaeIII	GGCC	6 cut(s)	114, 125, 1384, 2472, 2819, 2871
HgaI	GACGC	1 cut(s)	34
HhaI	GCGC	1 cut(s)	66
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	592
HindII	GTYRAC	1 cut(s)	592
HindIII	AAGCTT	3 cut(s)	827, 1793, 2678
Hpy166II	GTNNAC	9 cut(s)	160, 592, 622, 968, 1065, 2087, 2248, 2459, 3284
Hpy188I	TCNGA	9 cut(s)	22, 718, 1186, 1639, 1660, 1813, 1910, 2697, 3174
Hpy8I	GTNNAC	9 cut(s)	160, 592, 622, 968, 1065, 2087, 2248, 2459, 3284
Hpy99I	CGWCG	3 cut(s)	26, 187, 2085
HpyCH4IV	ACGT	1 cut(s)	3211
HpySE526I	ACGT	1 cut(s)	3211
HspAI	GCGC	1 cut(s)	64
Kpn2I	TCCGGA	2 cut(s)	148, 1735
KpnI	GGTACC	1 cut(s)	1806
Ksp22I	TGATCA	3 cut(s)	2029, 2521, 2836
Kzo9I	GATC	8 cut(s)	292, 1535, 1696, 2029, 2196, 2386, 2521, 2836
LmnI	GCTCC	7 cut(s)	151, 448, 1186, 1194, 1586, 2851, 3300
LweI	GCATC	9 cut(s)	262, 551, 1307, 2019, 2326, 2402, 2424, 2922, 3152
MaeI	CTAG	4 cut(s)	737, 1100, 1770, 3020
MaeII	ACGT	1 cut(s)	3211
MaeIII	GTNAC	9 cut(s)	352, 925, 1222, 1304, 1412, 1702, 1891, 3053, 3212
MalI	GATC	8 cut(s)	294, 1537, 1698, 2031, 2198, 2388, 2523, 2838
MbiI	CCGCTC	1 cut(s)	213
MboI	GATC	8 cut(s)	292, 1535, 1696, 2029, 2196, 2386, 2521, 2836
MfeI	CAATTG	1 cut(s)	1525
MflI	RGATCY	3 cut(s)	292, 1535, 2196
MhlI	GDGCHC	2 cut(s)	1191, 3297
MlsI	TGGCCA	1 cut(s)	2472
MluNI	TGGCCA	1 cut(s)	2472
MlyI	GAGTC	9 cut(s)	341, 578, 674, 692, 722, 1888, 2681, 2908, 3184
MmeI	TCCRAC	2 cut(s)	45, 1164
Mox20I	TGGCCA	1 cut(s)	2472
Mph1103I	ATGCAT	2 cut(s)	1917, 2417
MroI	TCCGGA	2 cut(s)	148, 1735
MscI	TGGCCA	1 cut(s)	2472
MseI	TTAA	7 cut(s)	747, 831, 1176, 1595, 2561, 2706, 2883
MslI	CAYNNNNRTG	2 cut(s)	2352, 3148
Msp20I	TGGCCA	1 cut(s)	2472
MspA1I	CMGCKG	3 cut(s)	875, 2527, 2975
MspCI	CTTAAG	1 cut(s)	830
MspR9I	CCNGG	7 cut(s)	121, 122, 127, 1800, 2379, 2502, 3265
MunI	CAATTG	1 cut(s)	1525
Mva1269I	GAATGC	5 cut(s)	782, 1087, 1820, 1917, 3095
MvaI	CCWGG	4 cut(s)	127, 2379, 2502, 3265
MvnI	CGCG	2 cut(s)	45, 66
NciI	CCSGG	3 cut(s)	121, 122, 1800
NdeI	CATATG	2 cut(s)	2222, 3149
NdeII	GATC	8 cut(s)	292, 1535, 1696, 2029, 2196, 2386, 2521, 2836
NmeAIII	GCCGAG	1 cut(s)	339
NmuCI	GTSAC	5 cut(s)	352, 925, 1222, 1304, 1702
NsiI	ATGCAT	2 cut(s)	1917, 2417
NspI	RCATGY	3 cut(s)	1364, 1443, 3078
PaeI	GCATGC	2 cut(s)	1364, 1443
PaeR7I	CTCGAG	1 cut(s)	1208
PagI	TCATGA	2 cut(s)	1777, 2833
PceI	AGGCCT	1 cut(s)	2871
PcsI	WCGNNNNNNNCGW	1 cut(s)	2416
PctI	GAATGC	5 cut(s)	782, 1087, 1820, 1917, 3095
PfeI	GAWTC	8 cut(s)	920, 1445, 1652, 1823, 2574, 2864, 2960, 3273
PflMI	CCANNNNNTGG	2 cut(s)	844, 2738
PfoI	TCCNGGA	1 cut(s)	2377
PleI	GAGTC	9 cut(s)	340, 577, 673, 691, 721, 1887, 2681, 2908, 3183
PpsI	GAGTC	9 cut(s)	340, 577, 673, 691, 721, 1887, 2681, 2908, 3183
Psp124BI	GAGCTC	1 cut(s)	1191
Psp1406I	AACGTT	1 cut(s)	3211
Psp6I	CCWGG	4 cut(s)	125, 2377, 2500, 3263
PspEI	GGTNACC	1 cut(s)	352
PspGI	CCWGG	4 cut(s)	125, 2377, 2500, 3263
PspPI	GGNCC	6 cut(s)	112, 117, 123, 2498, 2729, 2818
PstI	CTGCAG	1 cut(s)	2532
PstNI	CAGNNNCTG	1 cut(s)	1981
PsuI	RGATCY	3 cut(s)	292, 1535, 2196
PvuII	CAGCTG	2 cut(s)	2527, 2975
RsaI	GTAC	6 cut(s)	530, 1394, 1513, 1804, 2297, 3314
RsaNI	GTAC	6 cut(s)	529, 1393, 1512, 1803, 2296, 3313
RseI	CAYNNNNRTG	2 cut(s)	2352, 3148
SacI	GAGCTC	1 cut(s)	1191
SaqAI	TTAA	7 cut(s)	747, 831, 1176, 1595, 2561, 2706, 2883
Sau3AI	GATC	8 cut(s)	292, 1535, 1696, 2029, 2196, 2386, 2521, 2836
Sau96I	GGNCC	6 cut(s)	112, 117, 123, 2498, 2729, 2818
SchI	GAGTC	9 cut(s)	341, 578, 674, 692, 722, 1888, 2681, 2908, 3184
ScrFI	CCNGG	7 cut(s)	121, 122, 127, 1800, 2379, 2502, 3265
SduI	GDGCHC	2 cut(s)	1191, 3297
SfaNI	GCATC	9 cut(s)	262, 551, 1307, 2019, 2326, 2402, 2424, 2922, 3152
SfcI	CTRYAG	2 cut(s)	1620, 2528
Sfr274I	CTCGAG	1 cut(s)	1208
SinI	GGWCC	3 cut(s)	117, 2498, 2729
SlaI	CTCGAG	1 cut(s)	1208
SmaI	CCCGGG	1 cut(s)	122
SmiMI	CAYNNNNRTG	2 cut(s)	2352, 3148
SmlI	CTYRAG	4 cut(s)	830, 1208, 1403, 2916
SmoI	CTYRAG	4 cut(s)	830, 1208, 1403, 2916
SphI	GCATGC	2 cut(s)	1364, 1443
SseBI	AGGCCT	1 cut(s)	2871
SspI	AATATT	1 cut(s)	2701
SspMI	CTAG	4 cut(s)	737, 1100, 1770, 3020
SstI	GAGCTC	1 cut(s)	1191
StuI	AGGCCT	1 cut(s)	2871
StyD4I	CCNGG	7 cut(s)	119, 120, 125, 1798, 2377, 2500, 3263
StyI	CCWWGG	3 cut(s)	1461, 2240, 3043
TaiI	ACGT	1 cut(s)	3214
TaqI	TCGA	8 cut(s)	545, 1002, 1157, 1209, 1882, 2410, 2874, 3231
TaqII	GACCGA	3 cut(s)	804, 1059, 2953
TatI	WGTACW	2 cut(s)	1392, 3312
TauI	GCSGC	4 cut(s)	209, 216, 219, 1054
TfiI	GAWTC	8 cut(s)	920, 1445, 1652, 1823, 2574, 2864, 2960, 3273
Tru1I	TTAA	7 cut(s)	747, 831, 1176, 1595, 2561, 2706, 2883
Tru9I	TTAA	7 cut(s)	747, 831, 1176, 1595, 2561, 2706, 2883
TseFI	GTSAC	5 cut(s)	352, 925, 1222, 1304, 1702
Tsp45I	GTSAC	5 cut(s)	352, 925, 1222, 1304, 1702
TspGWI	ACGGA	2 cut(s)	609, 2408
TspMI	CCCGGG	1 cut(s)	120
Van91I	CCANNNNNTGG	2 cut(s)	844, 2738
Vha464I	CTTAAG	1 cut(s)	830
VpaK11BI	GGWCC	3 cut(s)	117, 2498, 2729
XapI	RAATTY	3 cut(s)	1613, 2543, 2921
XceI	RCATGY	3 cut(s)	1364, 1443, 3078
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2604
XhoI	CTCGAG	1 cut(s)	1208
XmaI	CCCGGG	1 cut(s)	120
XspI	CTAG	4 cut(s)	737, 1100, 1770, 3020
Zsp2I	ATGCAT	2 cut(s)	1917, 2417

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.