Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0010740

Physical Location & Seq

Genomic Coordinates Forward (+)

60606822 .. 60614841

Gene Structure 8020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG382000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2934 bp

ATGGCGAACGGAACGGATTCCAACGAGTTCGTGGTGCGGTCTCGGGTCCGACCGGGGCTGAAGCGCGAATTGACCTTCGCATTGGCTCAGGCGGAGGTCTCCTGTTCGTTGGGCCGGACCCGGGCCAGGAAGGCCCAGAATGAGCTGCCGGTGAATGTGAACCGTAAGAGATTGAAGAAGGAGGCGAAAAGCGAGCCGCAGAAGGACGAGGAGGAGGAGAAGCCGGCGAGTGGTGGCGAGAATGTGAAGGTTGTTGAGGATTTGGTGGAGGCTATAAGCGAAGAAGATGCGAAGAGCGATGTGGTGGATCTAATGAGCGACGACGAGCCTAGAAGCCATGTGGCGGAGTCCAAGGTCGTCACCGAAGACGAATTGAAGAACGGTGTTGTAGAGATGGCTATGGATAATGAGCAAAACGTTGGGTCTGTTGGTAATGAAGATGAGGCTAAGCAGGAGCAATTGAAGATGGAGGAGCCGGAAAAGCCCGATTCGATTGGTAATGGTGAAAAGGTGGAAGGAGAAGCGATTGAAAAGCCGCTGAGGAGGTACACTCGGTCGGCATCGAGGCGGAAGAGCCAAGTAGCTGAGCCTAAGCTGACAGAGAAGGTCTGCGAAGACGAAATGAAGAATGGTGCAGTGGATATGACCGGCTGCGGTGGTGATTCCGTGAATGAAGATGAACCTAAGCAGGAGGAACAGCCTTTGGTGAAACTAGAAATCCTCAATTTGATTGAAAAGGGTGATACGGTTGAATGTGAGGTGAGTGAAACGCCGCAGAGGCGGTACACTCGGTCAGCATTGAAGCTTAAAAGCCAAGTGGCTGAGTCTATCTTGAAGGTCAGTGAAGATGAAATGAAGAATGGTGTAGTGGATATGGCTATTGATGATGAACCCAATACCGGTAGTGTTGGTGATTCTGTGGCTGAAGATGAGCCTAGGCAGGAGGAATTGAAGAAGAGTGAATCTGAACAGCCTTTGGTGAAACTAGAAATCCTCGATTTGATTGAAAAGGGTGATAAGGTGGAATGTGAGGCGAATGAAAAGCCGCAGAGGAGGTTCACTCGGTCAACATTGAACACAGAGAATGAAGCCCTAGACTTCAATTCGGTTTCCCAGAAAAGCACACCAGCTGAGGTTGAGACGAAAATGCGGAAGACTGTGAAAAAGTTTAGACTGTTAGAGCTTCTTGAAACTGGTATTCTTGAGGGGCAGCGGGTGACTTACCTTAAAGGATCAAAGGGAAGAAAAACTGCAGAGAAAGGGCTTACAGGAGTGATTACTGGTTCTGGTATAATGTGTCACTGTGAGCGATGCAATGGAACTGATGGCGTTTCACCAGCTATTTTTGAGTTGCATGCTGAAAGCGCAAATAAACGTCCTCCTGAGTACATATATCTTGAGAACGGGAAGACCCTTCGGGATGTCCTAACTGCATGCAATTCTTCATTGGAAACCTTGGAAGAAGCTGTCCGGCTCGCTGTTGGTTGCTCATCTATAAAGACGTGTACCATCTGCCTCAATTGCAAAGGATCTATTTGCAAAGATGATACTAGATCAGCAATGCTTCTTTGTCGCTCCTGCTTGGACTTGAAAGAGACCCAAGCTAAGTTATCTGTAGCTGCGAAACCTTCTGAAGTTGCAAACGATTGTTCTGAATTACCAAAGCCGGTTTCAGTTGCAAACTGTCCTGACACCGTTCCAGAGTGTCCTGACATTGTCCTAGAGTGCCCTAACGCCATTTCAAGGTGTCATGATACTGTTTCAAAGTGTCTCGGTACCATTTCAAATTGCCCTGATTCTTCTCCTAAGTGTCCTGATACTGTGCTGAAGAGTAGGTCGTCAGCAAGTAAGAGTCGAGGAAGAGTAACCAGAAAGGATACCGGGATGCACAAGTTGGTTTTTGAGGATAATTTCTTACCGGATGGAACTGAAGTTGTTTATGTTTCGGGTGGACAGAGACGGGCTGTCGGCTATAAAAAGGGGTCTGGCATCATGTGTAGTTGCTGCAATACAGAGGTCAGTCCCTCGCAGTTTGAAGCCCATGCTGGCTGTTCATCACGTCGCAAACCCTACCACAACATTTTCATATCTAATGGGGTATCTCTTCACGAGTTGGCATTAAAGCTTTCAAAAAAGCGGAGGTTGTCTACCGAGGACAGTGATGACCTTTGCTTCATCTGCAGAAAAGGAGGAAAGGTCATATGCTGTGATAGTTGCCCAAGGGTTTTTCATGCAGGGTGCCTTTCTCTACCAACTGTCCCTAATGGTACTTGGTACTGTAAACATTGCCAGACTATGTTCGATAGAGACATAGATGCAGAGCGTAATGTCAATGCTGTTGCAGCTGGAAGGGTTGCAGGAGTTGATCCTATAAAACAAATAACCAACCGATGCATTCGTATTGTCACAGCTTGCGATGAAAAGTTCGGTGGATGTGCACTGTGCAGAGGCCATGAGTTCAAAAACGAGGGTTTTGGTCCTGGGACAGTTATTTTATGCGATCAGTGTGAAAGGGAATTTCATGTCGGCTGTTTGAAGGAAAAAGGAATTGTAGATTTGAAGGAAGTTCCAAAAGAGAAGTGGTTCTGTCATCCAGATTGTCTCAGGGTTCATTCAGCTTTGCAGAAGTTGGTAGTTCATGGGCAACATAAGCTTCCAGAGTCCCTCCTGAATGTCGTAAGGAAGAAAAAGAATGAAAAAGGTCCAGCAAAGGGGGGTCTTGATATAAAATGGAGGGTGCTTAGTGGGAAAACGTCTAATGATGATGAAAGTTTACAGTTGCTTTCCAAGGCTCTTGCCATATTTCATGATCAATTTGCTCCTATTGTTGATAAGGAATCAGGCCTCGACTTCATTAGGGAAATGCTTTATGGAGGGGCCATAAAGACTCAAGAATTTGCTGGGATGTACTGTGCAATAGTTACACTCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

977

Amino Acids

107.63

Weight (kDa)

5.82

Isoelectric Point (pI)

45.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	424 - 479	2.4e-12	Tify domain binding domain
TDBD	PF16135	660 - 705	6.7e-16	Tify domain binding domain
PHD-1st_NSD	PF23011	721 - 764	4.5e-06	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD	PF00628	724 - 763	9e-07	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0010740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27980
fragaria_vesca	FvH4_3g30510 FvH4_3g30510 FvH4_3g30510
malus_domestica	MD03G1127900.v1.1 MD11G1149500.v1.1
prunus_persica	Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1
pyrus_communis	pycom11g12240
rosa_chinensis	RchiOBHm_Chr5g0056471
rosa_laevigata	RLG00000035101
rosa_multiflora	Rmu_sc0002761.1_g000015
rosa_roxburghii	Rroxscaffold_1G00023850
rosa_rugosa	Rorug05G0300200
rosa_samantha	Rh5AG370700 Rh5BG382000 Rh5CG405100 Rh5DG394900
rosa_wichuraiana	Rw5G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1775
AccB1I	GGYRCC	2 cut(s)	1775, 2238
AccI	GTMKAC	1 cut(s)	2147
AccII	CGCG	1 cut(s)	66
AclI	AACGTT	1 cut(s)	417
AclWI	GGATC	4 cut(s)	315, 1240, 1537, 2360
AcsI	RAATTY	2 cut(s)	2516, 2894
AcuI	CTGAAG	5 cut(s)	80, 945, 1653, 1847, 1950
AfaI	GTAC	8 cut(s)	548, 785, 1388, 1507, 1777, 2269, 2276, 2909
AfiI	CCNNNNNNNGG	7 cut(s)	121, 126, 230, 343, 899, 1743, 2711
AflIII	ACRYGT	1 cut(s)	1502
AgeI	ACCGGT	1 cut(s)	899
AhdI	GACNNNNNGTC	1 cut(s)	1964
AjiI	CACGTC	2 cut(s)	1503, 2060
AjnI	CCWGG	2 cut(s)	125, 2479
AjuI	GAANNNNNNNTTGG	2 cut(s)	1654, 1686
AleI	CACNNNNGTG	1 cut(s)	2929
Alw21I	GWGCWC	1 cut(s)	2440
Alw26I	GTCTC	8 cut(s)	45, 103, 1133, 1589, 1775, 1951, 2301, 2606
Alw44I	GTGCAC	1 cut(s)	2436
AlwI	GGATC	4 cut(s)	315, 1240, 1537, 2360
Ama87I	CYCGRG	2 cut(s)	42, 120
AoxI	GGCC	6 cut(s)	112, 123, 132, 2449, 2842, 2877
ApaLI	GTGCAC	1 cut(s)	2436
ApeKI	GCWGC	6 cut(s)	145, 651, 1210, 1619, 2004, 2342
ApoI	RAATTY	2 cut(s)	2516, 2894
AsiGI	ACCGGT	1 cut(s)	899
Asp700I	GAANNNNTTC	2 cut(s)	16, 2582
Asp718I	GGTACC	1 cut(s)	1775
AspA2I	CCTAGG	1 cut(s)	935
AspLEI	GCGC	2 cut(s)	66, 1367
AspS9I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2477, 2702, 2877
AsuC2I	CCSGG	4 cut(s)	54, 121, 122, 1882
AvaI	CYCGRG	2 cut(s)	42, 120
AvaII	GGWCC	4 cut(s)	46, 117, 2477, 2702
AvrII	CCTAGG	1 cut(s)	935
BaeGI	GKGCMC	2 cut(s)	1730, 2440
BanI	GGYRCC	2 cut(s)	1775, 2238
BauI	CACGAG	1 cut(s)	2108
BbsI	GAAGAC	4 cut(s)	372, 621, 1160, 1415
Bbv12I	GWGCWC	1 cut(s)	2440
BbvCI	CCTCAGC	2 cut(s)	539, 1131
BbvI	GCAGC	6 cut(s)	132, 638, 1222, 1606, 1991, 2354
BccI	CCATC	5 cut(s)	388, 460, 1319, 1517, 1916
BcgI	CGANNNNNNTGC	2 cut(s)	269, 303
BciT130I	CCWGG	2 cut(s)	127, 2481
BciVI	GTATCC	1 cut(s)	1870
BclI	TGATCA	1 cut(s)	2809
BcnI	CCSGG	4 cut(s)	54, 121, 122, 1882
BcoDI	GTCTC	8 cut(s)	45, 103, 1133, 1589, 1775, 1951, 2301, 2606
BfaI	CTAG	7 cut(s)	330, 713, 936, 986, 1094, 1551, 1721
BfmI	CTRYAG	3 cut(s)	1251, 1614, 2179
BfuI	GTATCC	1 cut(s)	1870
BglI	GCCNNNNNGGC	2 cut(s)	131, 778
BlnI	CCTAGG	1 cut(s)	935
BlpI	GCTNAGC	2 cut(s)	447, 585
Bme1390I	CCNGG	6 cut(s)	54, 121, 122, 127, 1882, 2481
Bme18I	GGWCC	4 cut(s)	46, 117, 2477, 2702
BmeRI	GACNNNNNGTC	1 cut(s)	1964
BmeT110I	CYCGRG	2 cut(s)	42, 120
BmgBI	CACGTC	2 cut(s)	1503, 2060
BmgT120I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2477, 2702, 2877
BmiI	GGNNCC	6 cut(s)	47, 119, 474, 1777, 2240, 2878
BmrFI	CCNGG	6 cut(s)	54, 121, 122, 127, 1882, 2481
BmsI	GCATC	7 cut(s)	277, 569, 1301, 1875, 1998, 2305, 2381
BpiI	GAAGAC	4 cut(s)	372, 621, 1160, 1415
BplI	GAGNNNNNCTC	4 cut(s)	535, 567, 1045, 1077
Bpu10I	CCTNAGC	5 cut(s)	87, 539, 591, 684, 1131
Bpu1102I	GCTNAGC	2 cut(s)	447, 585
BpuEI	CTTGAG	4 cut(s)	1223, 1418, 2874, 2912
BpuMI	CCSGG	4 cut(s)	54, 121, 122, 1882
BsaI	GGTCTC	3 cut(s)	45, 103, 1589
BsaJI	CCNNGG	9 cut(s)	53, 120, 351, 935, 1455, 2151, 2219, 2480, 2787
BsaWI	WCCGGW	2 cut(s)	899, 1918
BsaXI	ACNNNNNCTCC	2 cut(s)	2181, 2211
Bsc4I	CCNNNNNNNGG	7 cut(s)	121, 126, 230, 343, 899, 1743, 2711
Bse118I	RCCGGY	5 cut(s)	148, 223, 647, 899, 1666
Bse1I	ACTGG	2 cut(s)	1198, 1285
Bse3DI	GCAATG	3 cut(s)	1321, 1566, 2284
BseBI	CCWGG	2 cut(s)	127, 2481
BseDI	CCNNGG	9 cut(s)	53, 120, 351, 935, 1455, 2151, 2219, 2480, 2787
BseGI	GGATG	6 cut(s)	1426, 1890, 1927, 2438, 2590, 2910
BseLI	CCNNNNNNNGG	7 cut(s)	121, 126, 230, 343, 899, 1743, 2711
BseMI	GCAATG	3 cut(s)	1321, 1566, 2284
BseMII	CTCAG	7 cut(s)	101, 530, 576, 813, 1122, 1374, 2617
BseNI	ACTGG	2 cut(s)	1198, 1285
BseRI	GAGGAG	6 cut(s)	224, 227, 230, 485, 556, 1066
BseSI	GKGCMC	2 cut(s)	1730, 2440
BseXI	GCAGC	6 cut(s)	132, 638, 1222, 1606, 1991, 2354
BseYI	CCCAGC	1 cut(s)	2900
BsgI	GTGCAG	2 cut(s)	654, 2464
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	2 cut(s)	53, 557
BshFI	GGCC	6 cut(s)	114, 125, 134, 2451, 2844, 2879
BshNI	GGYRCC	2 cut(s)	1775, 2238
BshTI	ACCGGT	1 cut(s)	899
BsiEI	CGRYCG	2 cut(s)	53, 557
BsiHKAI	GWGCWC	1 cut(s)	2440
BsiHKCI	CYCGRG	2 cut(s)	42, 120
BslFI	GGGAC	4 cut(s)	2007, 2243, 2497, 2647
BslI	CCNNNNNNNGG	7 cut(s)	121, 126, 230, 343, 899, 1743, 2711
BsmAI	GTCTC	8 cut(s)	45, 103, 1133, 1589, 1775, 1951, 2301, 2606
BsmBI	CGTCTC	2 cut(s)	1133, 1951
BsmFI	GGGAC	4 cut(s)	2007, 2243, 2497, 2647
BsmI	GAATGC	1 cut(s)	2394
BsnI	GGCC	6 cut(s)	114, 125, 134, 2451, 2844, 2879
Bso31I	GGTCTC	3 cut(s)	45, 103, 1589
BsoBI	CYCGRG	2 cut(s)	42, 120
Bsp1286I	GDGCHC	2 cut(s)	1730, 2440
Bsp143I	GATC	7 cut(s)	307, 1232, 1529, 1553, 2365, 2500, 2809
Bsp1720I	GCTNAGC	2 cut(s)	447, 585
BspANI	GGCC	6 cut(s)	114, 125, 134, 2451, 2844, 2879
BspCNI	CTCAG	7 cut(s)	100, 531, 577, 814, 1123, 1375, 2616
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	2 cut(s)	1750, 2806
BspLI	GGNNCC	6 cut(s)	47, 119, 474, 1777, 2240, 2878
BspMAI	CTGCAG	2 cut(s)	1255, 2183
BspPI	GGATC	4 cut(s)	315, 1240, 1537, 2360
BspQI	GCTCTTC	2 cut(s)	287, 566
BspT107I	GGYRCC	2 cut(s)	1775, 2238
BspTNI	GGTCTC	3 cut(s)	45, 103, 1589
BsrDI	GCAATG	3 cut(s)	1321, 1566, 2284
BsrFI	RCCGGY	5 cut(s)	148, 223, 647, 899, 1666
BsrI	ACTGG	2 cut(s)	1198, 1285
BssAI	RCCGGY	5 cut(s)	148, 223, 647, 899, 1666
BssECI	CCNNGG	9 cut(s)	53, 120, 351, 935, 1455, 2151, 2219, 2480, 2787
BssMI	GATC	7 cut(s)	307, 1232, 1529, 1553, 2365, 2500, 2809
BssSI	CACGAG	1 cut(s)	2108
BssT1I	CCWWGG	5 cut(s)	351, 935, 1455, 2219, 2787
Bst2BI	CACGAG	1 cut(s)	2108
Bst2UI	CCWGG	2 cut(s)	127, 2481
Bst6I	CTCTTC	6 cut(s)	287, 566, 950, 1823, 1855, 2109
BstC8I	GCNNGC	7 cut(s)	194, 225, 1356, 1435, 1476, 2047, 2413
BstF5I	GGATG	6 cut(s)	1426, 1890, 1927, 2438, 2590, 2910
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	2 cut(s)	66, 1367
BstKTI	GATC	7 cut(s)	310, 1235, 1532, 1556, 2368, 2503, 2812
BstMAI	GTCTC	8 cut(s)	45, 103, 1133, 1589, 1775, 1951, 2301, 2606
BstMBI	GATC	7 cut(s)	307, 1232, 1529, 1553, 2365, 2500, 2809
BstMCI	CGRYCG	2 cut(s)	53, 557
BstMWI	GCNNNNNNNGC	8 cut(s)	131, 481, 778, 1364, 1521, 2178, 2342, 2650
BstNI	CCWGG	2 cut(s)	127, 2481
BstNSI	RCATGY	2 cut(s)	1358, 1437
BstSCI	CCNGG	6 cut(s)	52, 119, 120, 125, 1880, 2479
BstSFI	CTRYAG	3 cut(s)	1251, 1614, 2179
BstSLI	GKGCMC	2 cut(s)	1730, 2440
BstUI	CGCG	1 cut(s)	66
BstV1I	GCAGC	6 cut(s)	132, 638, 1222, 1606, 1991, 2354
BstV2I	GAAGAC	4 cut(s)	372, 621, 1160, 1415
BstX2I	RGATCY	2 cut(s)	307, 1529
BstYI	RGATCY	2 cut(s)	307, 1529
BsuI	GTATCC	1 cut(s)	1870
BsuRI	GGCC	6 cut(s)	114, 125, 134, 2451, 2844, 2879
BtgZI	GCGATG	3 cut(s)	312, 1324, 2430
BtrI	CACGTC	2 cut(s)	1503, 2060
BtsCI	GGATG	6 cut(s)	1426, 1890, 1927, 2438, 2590, 2910
BtsI	GCAGTG	1 cut(s)	642
BtsIMutI	CAGTG	6 cut(s)	642, 847, 1300, 2164, 2438, 2510
Cac8I	GCNNGC	7 cut(s)	194, 225, 1356, 1435, 1476, 2047, 2413
CciI	TCATGA	2 cut(s)	1750, 2806
CfoI	GCGC	2 cut(s)	66, 1367
Cfr10I	RCCGGY	5 cut(s)	148, 223, 647, 899, 1666
Cfr13I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2477, 2702, 2877
Cfr9I	CCCGGG	1 cut(s)	120
Csp6I	GTAC	8 cut(s)	547, 784, 1387, 1506, 1776, 2268, 2275, 2908
CspAI	ACCGGT	1 cut(s)	899
CviQI	GTAC	8 cut(s)	547, 784, 1387, 1506, 1776, 2268, 2275, 2908
DpnI	GATC	7 cut(s)	309, 1234, 1531, 1555, 2367, 2502, 2811
DpnII	GATC	7 cut(s)	307, 1232, 1529, 1553, 2365, 2500, 2809
DriI	GACNNNNNGTC	1 cut(s)	1964
Eam1104I	CTCTTC	6 cut(s)	287, 566, 950, 1823, 1855, 2109
Eam1105I	GACNNNNNGTC	1 cut(s)	1964
EarI	CTCTTC	6 cut(s)	287, 566, 950, 1823, 1855, 2109
EciI	GGCGGA	3 cut(s)	107, 359, 583
Eco130I	CCWWGG	5 cut(s)	351, 935, 1455, 2219, 2787
Eco147I	AGGCCT	1 cut(s)	2844
Eco31I	GGTCTC	3 cut(s)	45, 103, 1589
Eco47I	GGWCC	4 cut(s)	46, 117, 2477, 2702
Eco57I	CTGAAG	5 cut(s)	80, 945, 1653, 1847, 1950
Eco88I	CYCGRG	2 cut(s)	42, 120
EcoRII	CCWGG	2 cut(s)	125, 2479
EcoT14I	CCWWGG	5 cut(s)	351, 935, 1455, 2219, 2787
EcoT22I	ATGCAT	1 cut(s)	2396
ErhI	CCWWGG	5 cut(s)	351, 935, 1455, 2219, 2787
Esp3I	CGTCTC	2 cut(s)	1133, 1951
FaqI	GGGAC	4 cut(s)	2007, 2243, 2497, 2647
FauI	CCCGC	1 cut(s)	1206
FauNDI	CATATG	1 cut(s)	2201
FbaI	TGATCA	1 cut(s)	2809
FblI	GTMKAC	1 cut(s)	2147
FokI	GGATG	6 cut(s)	1433, 1897, 1934, 2445, 2577, 2917
FspBI	CTAG	7 cut(s)	330, 713, 936, 986, 1094, 1551, 1721
GlaI	GCGC	2 cut(s)	65, 1366
GsaI	CCCAGC	1 cut(s)	2904
HaeIII	GGCC	6 cut(s)	114, 125, 134, 2451, 2844, 2879
HhaI	GCGC	2 cut(s)	66, 1367
Hin6I	GCGC	2 cut(s)	64, 1365
HinP1I	GCGC	2 cut(s)	64, 1365
HincII	GTYRAC	1 cut(s)	1068
HindII	GTYRAC	1 cut(s)	1068
HindIII	AAGCTT	3 cut(s)	803, 2123, 2651
Hpy188I	TCNGA	4 cut(s)	50, 967, 1633, 1654
Hpy99I	CGWCG	3 cut(s)	323, 326, 2064
HpyCH4IV	ACGT	5 cut(s)	417, 1375, 1502, 2059, 2753
HpyF10VI	GCNNNNNNNGC	8 cut(s)	131, 481, 778, 1364, 1521, 2178, 2342, 2650
HpySE526I	ACGT	5 cut(s)	417, 1375, 1502, 2059, 2753
HspAI	GCGC	2 cut(s)	64, 1365
KpnI	GGTACC	1 cut(s)	1779
KroI	GCCGGC	1 cut(s)	223
KroNI	GCCGGC	1 cut(s)	225
Ksp22I	TGATCA	1 cut(s)	2809
Kzo9I	GATC	7 cut(s)	307, 1232, 1529, 1553, 2365, 2500, 2809
LguI	GCTCTTC	2 cut(s)	287, 566
LmnI	GCTCC	4 cut(s)	454, 472, 1580, 2824
Lsp1109I	GCAGC	6 cut(s)	132, 638, 1222, 1606, 1991, 2354
LweI	GCATC	7 cut(s)	277, 569, 1301, 1875, 1998, 2305, 2381
MaeI	CTAG	7 cut(s)	330, 713, 936, 986, 1094, 1551, 1721
MaeII	ACGT	5 cut(s)	417, 1375, 1502, 2059, 2753
MaeIII	GTNAC	6 cut(s)	358, 1216, 1298, 1864, 2404, 2920
MalI	GATC	7 cut(s)	309, 1234, 1531, 1555, 2367, 2502, 2811
MboI	GATC	7 cut(s)	307, 1232, 1529, 1553, 2365, 2500, 2809
MfeI	CAATTG	2 cut(s)	458, 1519
MflI	RGATCY	2 cut(s)	307, 1529
MhlI	GDGCHC	2 cut(s)	1730, 2440
MlyI	GAGTC	5 cut(s)	356, 833, 1861, 2669, 2881
MmeI	TCCRAC	2 cut(s)	45, 73
Mph1103I	ATGCAT	1 cut(s)	2396
MroNI	GCCGGC	1 cut(s)	223
MroXI	GAANNNNTTC	2 cut(s)	16, 2582
MseI	TTAA	3 cut(s)	807, 1227, 2120
MslI	CAYNNNNRTG	1 cut(s)	2929
MspA1I	CMGCKG	4 cut(s)	538, 1130, 1213, 2345
MspR9I	CCNGG	6 cut(s)	54, 121, 122, 127, 1882, 2481
MunI	CAATTG	2 cut(s)	458, 1519
Mva1269I	GAATGC	1 cut(s)	2394
MvaI	CCWGG	2 cut(s)	127, 2481
MvnI	CGCG	1 cut(s)	66
MwoI	GCNNNNNNNGC	8 cut(s)	131, 481, 778, 1364, 1521, 2178, 2342, 2650
NaeI	GCCGGC	1 cut(s)	225
NciI	CCSGG	4 cut(s)	54, 121, 122, 1882
NdeI	CATATG	1 cut(s)	2201
NdeII	GATC	7 cut(s)	307, 1232, 1529, 1553, 2365, 2500, 2809
NgoMIV	GCCGGC	1 cut(s)	223
NlaIV	GGNNCC	6 cut(s)	47, 119, 474, 1777, 2240, 2878
NmuCI	GTSAC	4 cut(s)	358, 1216, 1298, 2404
NsiI	ATGCAT	1 cut(s)	2396
NspI	RCATGY	2 cut(s)	1358, 1437
OliI	CACNNNNGTG	1 cut(s)	2929
PaeI	GCATGC	2 cut(s)	1358, 1437
PagI	TCATGA	2 cut(s)	1750, 2806
PceI	AGGCCT	1 cut(s)	2844
PciSI	GCTCTTC	2 cut(s)	287, 566
PctI	GAATGC	1 cut(s)	2394
PdiI	GCCGGC	1 cut(s)	225
PdmI	GAANNNNTTC	2 cut(s)	16, 2582
PfeI	GAWTC	7 cut(s)	17, 488, 662, 914, 962, 1796, 2837
PflFI	GACNNNGTC	1 cut(s)	1715
PinAI	ACCGGT	1 cut(s)	899
PleI	GAGTC	5 cut(s)	355, 832, 1860, 2668, 2881
PpsI	GAGTC	5 cut(s)	355, 832, 1860, 2668, 2881
Psp1406I	AACGTT	1 cut(s)	417
Psp6I	CCWGG	2 cut(s)	125, 2479
PspFI	CCCAGC	1 cut(s)	2900
PspGI	CCWGG	2 cut(s)	125, 2479
PspN4I	GGNNCC	6 cut(s)	47, 119, 474, 1777, 2240, 2878
PspPI	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2477, 2702, 2877
PstI	CTGCAG	2 cut(s)	1255, 2183
PsuI	RGATCY	2 cut(s)	307, 1529
PsyI	GACNNNGTC	1 cut(s)	1715
PvuII	CAGCTG	2 cut(s)	1130, 2345
RsaI	GTAC	8 cut(s)	548, 785, 1388, 1507, 1777, 2269, 2276, 2909
RsaNI	GTAC	8 cut(s)	547, 784, 1387, 1506, 1776, 2268, 2275, 2908
RseI	CAYNNNNRTG	1 cut(s)	2929
SapI	GCTCTTC	2 cut(s)	287, 566
SaqAI	TTAA	3 cut(s)	807, 1227, 2120
Sau3AI	GATC	7 cut(s)	307, 1232, 1529, 1553, 2365, 2500, 2809
Sau96I	GGNCC	8 cut(s)	46, 112, 117, 123, 133, 2477, 2702, 2877
SchI	GAGTC	5 cut(s)	356, 833, 1861, 2669, 2881
ScrFI	CCNGG	6 cut(s)	54, 121, 122, 127, 1882, 2481
SduI	GDGCHC	2 cut(s)	1730, 2440
SfaNI	GCATC	7 cut(s)	277, 569, 1301, 1875, 1998, 2305, 2381
SfcI	CTRYAG	3 cut(s)	1251, 1614, 2179
SfiI	GGCCNNNNNGGCC	1 cut(s)	131
SinI	GGWCC	4 cut(s)	46, 117, 2477, 2702
SmaI	CCCGGG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	2929
SmlI	CTYRAG	4 cut(s)	1202, 1397, 2889, 2927
SmoI	CTYRAG	4 cut(s)	1202, 1397, 2889, 2927
SphI	GCATGC	2 cut(s)	1358, 1437
SseBI	AGGCCT	1 cut(s)	2844
SspMI	CTAG	7 cut(s)	330, 713, 936, 986, 1094, 1551, 1721
StuI	AGGCCT	1 cut(s)	2844
StyD4I	CCNGG	6 cut(s)	52, 119, 120, 125, 1880, 2479
StyI	CCWWGG	5 cut(s)	351, 935, 1455, 2219, 2787
TaiI	ACGT	5 cut(s)	420, 1378, 1505, 2062, 2756
TaqI	TCGA	6 cut(s)	491, 563, 996, 1855, 2301, 2847
TaqII	GACCGA	3 cut(s)	543, 780, 1053
TatI	WGTACW	2 cut(s)	1386, 2907
TauI	GCSGC	4 cut(s)	199, 538, 775, 1048
TfiI	GAWTC	7 cut(s)	17, 488, 662, 914, 962, 1796, 2837
Tru1I	TTAA	3 cut(s)	807, 1227, 2120
Tru9I	TTAA	3 cut(s)	807, 1227, 2120
TscAI	CASTG	6 cut(s)	642, 847, 1307, 2164, 2445, 2510
TseFI	GTSAC	4 cut(s)	358, 1216, 1298, 2404
TseI	GCWGC	6 cut(s)	145, 651, 1210, 1619, 2004, 2342
Tsp45I	GTSAC	4 cut(s)	358, 1216, 1298, 2404
TspGWI	ACGGA	3 cut(s)	24, 29, 655
TspMI	CCCGGG	1 cut(s)	120
TspRI	CASTG	6 cut(s)	642, 847, 1307, 2164, 2445, 2510
Tth111I	GACNNNGTC	1 cut(s)	1715
VneI	GTGCAC	1 cut(s)	2436
VpaK11BI	GGWCC	4 cut(s)	46, 117, 2477, 2702
XapI	RAATTY	2 cut(s)	2516, 2894
XceI	RCATGY	2 cut(s)	1358, 1437
XcmI	CCANNNNNNNNNTGG	2 cut(s)	28, 2577
XmaI	CCCGGG	1 cut(s)	120
XmaJI	CCTAGG	1 cut(s)	935
XmiI	GTMKAC	1 cut(s)	2147
XmnI	GAANNNNTTC	2 cut(s)	16, 2582
XspI	CTAG	7 cut(s)	330, 713, 936, 986, 1094, 1551, 1721
Zsp2I	ATGCAT	1 cut(s)	2396

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.