Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0010740

Physical Location & Seq

Genomic Coordinates Forward (+)

60890899 .. 60898206

Gene Structure 7308 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035101

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3309 bp

ATGGCGAACGGAACGGATTCCGACGAGTTCGTGGTGCGGTCTCGGGTCCGGCCGGGGCTGAAGCGCGAATTGACCTTCGCATTGGCTCAGGCGGAGGTCTCCTGTTCGTTGGGCCGGACCCGGGCCAGGAAGGCCCAGAATGAGCTGCCGGTGAATGTGAACCGTAAGAGATTGAAGAAGGAGGCGAAAAGCGAGGCGCAGAAGGACGACGGGGAGGAGAAACCGGCGAGTGGTGGCGAGAATGTGAAGGCTGTTGAGGATTTGGTGGAGGCTATAAGCGAAGACGATGCGAAGAGCGATGTGGTGGATCTTATGAGCGACGACGAGCCTAGAAGCCATGTGGCGGAGTCCAAGGTCACCGAAGACGAATTGAAGAACGGTGTTGTAGAGATGGCTATGGATAATGAGCAAAACGTTGGGTCTGTTGGTAATGAAGATGAGGCTAAGCAGGAGCAGTTGCATAAGGAGGAGCCGGAAAAGCCCGATTCGATTGCAAATGGTGAAAAGGTGGAACCGGAAAAGCCCAATTCGATTGAAAATGGTGAAAAGGTGGAAGGAGAGGTGATTGAAAAGCCGCTGAGGAGGTACACTCGGTCGGCATCGAGGCGGAAGAGCCAAGTAGCTGAGTCTAAGCTGACAGAGAAGGTCTGCGAAGACGAAATGAAGAATGGTGCAGTGGATATGGCTATTGATACCGGCTGTGGTGGTGATTCCGTGAATGAAGATGAGCCTAAGCAGCAGGAATTGAAGAAGAGTGGTTCCGAACAGCCTTTGGTGAAACTAGAAATCCTCAATTTGATTGAAAAGAGTGATAAGGTGGAATCTGAGGTGAGTGAAGAGCCGCAGAGGCGGTACACTCGTTCGGCATTGAAGCTTAAAAGCCAAGAGGCTGAGTCCATCCTGAAGGTCTGCGAAGATGAAATGAAGAATGGTGTAGTGGATATGGCTATTGATGATGAACCCAATACCGGTAGTGTTGGTGATTCTGTGGCTGAAGATGAGCCTAGGCAGGAGGAATTGAAGAAGAGTGAATCTGAACAGCCTTTGGTGAAACTAGAAATCCTCGATTTGATTGAAAAGGGTGATAAGGTGGAATGTGAGGTGAATGAAAAGCCGCAGAGGAGGTTCACTCGGTCAACATTGAACACAGAGAATGAAGCCCTAGACTTCAATTCGGTTTCCCAGAAAAGCGCACCAGCTGAGGTTGGGACGAAAATGCGGAAGACTGTGAAAAAGTTTAGACTGTTAGAGCTTCTTGAAACTGGTATTCTCGAGGGACAGCGGGTGACTTACCGTAAAGGATCAAAGGGAAGAAAAACTGCAGACAAAGGGCTTACAGGAGTGATTACTGGTTCTGGTATAATGTGTCACTGTAAGCGATGCAATGGAACTGATGGTGTTTCACCAGCTATTTTTGAGTTGCATGCTGAAAGCACAAATAAACGTCCTCCTGAGTACATATATCTTGAGAACGGGAAGACCCTTCGGGATGTCCTAACTGCATGCAATTCTTCATTGGAAACCTTGGAAGAAGCTGTCCGGCTCGCTGTTGGTTGCTCATCTATAAGGACGTGTACCATCTGCCTCAATTGCAAAGGATCTATTTGCAAAGATGATACTAGATCAGCAATGCTTCTTTGTCGCTCCTGCTTGGACTTGAAAGAGACCCAAGCTAAGCTATCTGTAGCTGCGAAACCTTCTGAAGTTGCAAACGATTGTTCTGAATTACCAAAGCCGGTTTCAGTTGCAAACTGTCCTGACACCGTTCCAGAGTGTCCTGACATTGTCCTAGAGTGCCCTAACGCCATTTCAAGGTGTCATGATACTGTTTCAAAGTGTCTCGGTACCATTTCAAATTGCCCTGATTCTTCTCCTAAGTGTCCTGATACTGTGCTGAAGAGTAGGTCGTCAGCAAGTAAGAGTCGAGGAAGAGTAACCAGAAAGGATACCGGGATGCACAAGTTGGTTTTTGAGGATGATTTCTTACCGGATGGAACTGAAGTAGTTTATGTTTCGGGTGGACAGAGACGGGCTGTCGGCTATAAAAAGGGGTCTGGCATCATGTGTAGTTGCTGCAATACAGAGGTCAGTCCCTCGCAGTTTGAAGCCCATGCTGGCTGTTCATCACGTCGCAAACCCTACCACAACATCTTCATATCTAATGGGGTATCTCTTCATGAGTTGGCATTACAGCTTTCAAAAAAGCGGAGGTTGTCTATCGAGGACAGTGATGACCTTTGCTTCATCTGCAGAAAAGGAGGAAAGGTCATATGCTGTGATAGTTGCCCAAGGGTTTTTCATGCAGGGTGCCTTTCTCTACCAACTGTCCCTAATGGTACTTGGTACTGTAAACATTGCCAGACTATGTTTGATAGAGAGATAGATGCAGAGAGTAATGTCAATGCTGTTGCAGCTGGAAGGGTTGCAGGAGTTGATCCTATAAAACAAATAACCAACCGATGCATTCGTATTGTCACAGCTTGCGATGAAAAGTTCGGTGGATGTGCACTGTGCAGAGGCCATGAGTTCAAAAACGAGGGTTTTGGTCCTGGGACAGTTATTTTATGCGATCAGTGTGAAAGGGAATTTCATGTTGGCTGTTTGAAGGAAAAAGGAATTGTAGATTTGAAGGAAGTTCCAAAAGAGAAGTGGTTCTGTCATCCAGATTGTCTCAGGGTTCATTCAGCTTTGCAGAAGTTGGTAGTTCATGGGCAACAGAAGCTTCCAGAGTCCCTCCTGAATGTTGTAAGGAAGAAAAACAATGAAAAAGATCCAGCAAAGGGGGGTCTTGATATAAAATGGAGGGTGCTTAGTGGGAAAACGTCTACCGATGATGAAAGTTTACAGTTGCTTTCCAAGGCTCTTGCCATCTTTCATGATCAATTTGCTCCTATTGTTGATAAGGAATCAGGCCTCGACTTCATTAGGGAAATGCTTTATGGCGAATCGGTCGTGTCAGCTGCTATGTTTCGTATCTATGGGACAGATGTGGCAGAGCTTCCTCTAGTGGCAACAAGTGCTGATTGCCAAGGACAGGGTTACTTTCAGACCTTATTTGCATGTATTCAGAGGCTTCTTGCATTTCTAAAGGTGAAAATTCTTCTGCTGCCTGCTGCTGATGAGGCAGCATCCATATGGACAAAAAAATTTGGTTTTCAGAATCTAAACCAAAGTGAGATACACGAGTACAGGAAATGTTACCCAATACTGATTTTCCATGGGACATCAGTGCTGCAGAAGTCAGTCCCCAAGCGCATAGTCCCTGGTTCACAGGAGAGTAAGGCGAAGGCGAAGGTTGAATCATCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

1103

Amino Acids

121.44

Weight (kDa)

5.89

Isoelectric Point (pI)

44.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	447 - 502	4.2e-13	Tify domain binding domain
TDBD	PF16135	683 - 728	7e-16	Tify domain binding domain
PHD-1st_NSD	PF23011	744 - 787	7.3e-06	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD	PF00628	747 - 786	1e-06	PHD-finger
IDM1_C	PF23209	981 - 1081	3.6e-36	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27980
fragaria_vesca	FvH4_3g30510 FvH4_3g30510 FvH4_3g30510
malus_domestica	MD03G1127900.v1.1 MD11G1149500.v1.1
prunus_persica	Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1
pyrus_communis	pycom11g12240
rosa_chinensis	RchiOBHm_Chr5g0056471
rosa_laevigata	RLG00000035101
rosa_multiflora	Rmu_sc0002761.1_g000015
rosa_roxburghii	Rroxscaffold_1G00023850
rosa_rugosa	Rorug05G0300200
rosa_samantha	Rh5AG370700 Rh5BG382000 Rh5CG405100 Rh5DG394900
rosa_wichuraiana	Rw5G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1844
AccB1I	GGYRCC	2 cut(s)	1844, 2307
AccI	GTMKAC	1 cut(s)	2825
AccII	CGCG	1 cut(s)	66
AclI	AACGTT	1 cut(s)	414
AclWI	GGATC	5 cut(s)	315, 1309, 1606, 2429, 2765
AcoI	YGGCCR	1 cut(s)	50
AcsI	RAATTY	3 cut(s)	2585, 3096, 3146
AcuI	CTGAAG	6 cut(s)	80, 923, 1014, 1722, 1916, 2019
AfaI	GTAC	8 cut(s)	587, 854, 1457, 1576, 1846, 2338, 2345, 3188
AfiI	CCNNNNNNNGG	8 cut(s)	121, 126, 230, 343, 968, 1812, 2780, 3034
AflIII	ACRYGT	1 cut(s)	1571
AgeI	ACCGGT	1 cut(s)	968
AhdI	GACNNNNNGTC	1 cut(s)	2033
AjiI	CACGTC	2 cut(s)	1572, 2129
AjnI	CCWGG	3 cut(s)	125, 2548, 3262
AjuI	GAANNNNNNNTTGG	4 cut(s)	1723, 1755, 2577, 2609
Alw21I	GWGCWC	1 cut(s)	2509
Alw26I	GTCTC	6 cut(s)	45, 103, 1658, 1844, 2020, 2675
Alw44I	GTGCAC	1 cut(s)	2505
AlwI	GGATC	5 cut(s)	315, 1309, 1606, 2429, 2765
Ama87I	CYCGRG	3 cut(s)	42, 120, 1271
AoxI	GGCC	6 cut(s)	50, 112, 123, 132, 2518, 2911
ApaLI	GTGCAC	1 cut(s)	2505
ApoI	RAATTY	3 cut(s)	2585, 3096, 3146
AsiGI	ACCGGT	1 cut(s)	968
Asp700I	GAANNNNTTC	2 cut(s)	16, 2651
Asp718I	GGTACC	1 cut(s)	1844
AspA2I	CCTAGG	1 cut(s)	1004
AspLEI	GCGC	4 cut(s)	66, 199, 1193, 3255
AspS9I	GGNCC	6 cut(s)	46, 112, 117, 123, 133, 2546
AsuC2I	CCSGG	4 cut(s)	54, 121, 122, 1951
AvaI	CYCGRG	3 cut(s)	42, 120, 1271
AvaII	GGWCC	3 cut(s)	46, 117, 2546
AvrII	CCTAGG	1 cut(s)	1004
BaeGI	GKGCMC	2 cut(s)	1799, 2509
BaeI	ACNNNNGTAYC	4 cut(s)	844, 877, 3170, 3203
BanI	GGYRCC	2 cut(s)	1844, 2307
BauI	CACGAG	1 cut(s)	3182
BbsI	GAAGAC	5 cut(s)	288, 369, 660, 1229, 1484
Bbv12I	GWGCWC	1 cut(s)	2509
BbvCI	CCTCAGC	2 cut(s)	578, 1200
BccI	CCATC	6 cut(s)	385, 905, 1388, 1586, 1985, 2876
BcgI	CGANNNNNNTGC	4 cut(s)	269, 303, 473, 507
BciT130I	CCWGG	3 cut(s)	127, 2550, 3264
BciVI	GTATCC	1 cut(s)	1939
BclI	TGATCA	1 cut(s)	2878
BcnI	CCSGG	4 cut(s)	54, 121, 122, 1951
BcoDI	GTCTC	6 cut(s)	45, 103, 1658, 1844, 2020, 2675
BfaI	CTAG	8 cut(s)	330, 782, 1005, 1055, 1163, 1620, 1790, 3005
BfmI	CTRYAG	4 cut(s)	1320, 1683, 2248, 3233
BfuI	GTATCC	1 cut(s)	1939
BglI	GCCNNNNNGGC	2 cut(s)	131, 847
BlnI	CCTAGG	1 cut(s)	1004
BlpI	GCTNAGC	2 cut(s)	444, 1674
Bme1390I	CCNGG	7 cut(s)	54, 121, 122, 127, 1951, 2550, 3264
Bme18I	GGWCC	3 cut(s)	46, 117, 2546
BmeRI	GACNNNNNGTC	1 cut(s)	2033
BmeT110I	CYCGRG	3 cut(s)	42, 120, 1271
BmgBI	CACGTC	2 cut(s)	1572, 2129
BmgT120I	GGNCC	6 cut(s)	46, 112, 117, 123, 133, 2546
BmiI	GGNNCC	7 cut(s)	47, 119, 471, 513, 760, 1846, 2309
BmrFI	CCNGG	7 cut(s)	54, 121, 122, 127, 1951, 2550, 3264
BmsI	GCATC	8 cut(s)	277, 608, 1370, 1944, 2067, 2374, 2450, 3137
BpiI	GAAGAC	5 cut(s)	288, 369, 660, 1229, 1484
BplI	GAGNNNNNCTC	4 cut(s)	574, 606, 1114, 1146
Bpu10I	CCTNAGC	4 cut(s)	87, 578, 732, 1200
Bpu1102I	GCTNAGC	2 cut(s)	444, 1674
BpuEI	CTTGAG	1 cut(s)	1487
BpuMI	CCSGG	4 cut(s)	54, 121, 122, 1951
BsaI	GGTCTC	3 cut(s)	45, 103, 1658
BsaWI	WCCGGW	3 cut(s)	514, 968, 1987
BsaXI	ACNNNNNCTCC	2 cut(s)	2250, 2280
Bsc4I	CCNNNNNNNGG	8 cut(s)	121, 126, 230, 343, 968, 1812, 2780, 3034
Bse118I	RCCGGY	5 cut(s)	148, 223, 695, 968, 1735
Bse1I	ACTGG	2 cut(s)	1267, 1354
Bse3DI	GCAATG	3 cut(s)	1390, 1635, 2353
BseBI	CCWGG	3 cut(s)	127, 2550, 3264
BseGI	GGATG	8 cut(s)	897, 1495, 1959, 1981, 1996, 2507, 2659, 3128
BseLI	CCNNNNNNNGG	8 cut(s)	121, 126, 230, 343, 968, 1812, 2780, 3034
BseMI	GCAATG	3 cut(s)	1390, 1635, 2353
BseMII	CTCAG	8 cut(s)	101, 569, 615, 816, 882, 1191, 1443, 2686
BseNI	ACTGG	2 cut(s)	1267, 1354
BseRI	GAGGAG	4 cut(s)	230, 482, 595, 1135
BseSI	GKGCMC	2 cut(s)	1799, 2509
BseX3I	CGGCCG	1 cut(s)	50
BsgI	GTGCAG	2 cut(s)	693, 2533
Bsh1236I	CGCG	1 cut(s)	66
Bsh1285I	CGRYCG	3 cut(s)	53, 596, 2952
BshFI	GGCC	6 cut(s)	52, 114, 125, 134, 2520, 2913
BshNI	GGYRCC	2 cut(s)	1844, 2307
BshTI	ACCGGT	1 cut(s)	968
BsiEI	CGRYCG	3 cut(s)	53, 596, 2952
BsiHKAI	GWGCWC	1 cut(s)	2509
BsiHKCI	CYCGRG	3 cut(s)	42, 120, 1271
BslI	CCNNNNNNNGG	8 cut(s)	121, 126, 230, 343, 968, 1812, 2780, 3034
BsmAI	GTCTC	6 cut(s)	45, 103, 1658, 1844, 2020, 2675
BsmBI	CGTCTC	1 cut(s)	2020
BsmI	GAATGC	1 cut(s)	2463
BsnI	GGCC	6 cut(s)	52, 114, 125, 134, 2520, 2913
Bso31I	GGTCTC	3 cut(s)	45, 103, 1658
BsoBI	CYCGRG	3 cut(s)	42, 120, 1271
Bsp1286I	GDGCHC	2 cut(s)	1799, 2509
Bsp143I	GATC	8 cut(s)	307, 1301, 1598, 1622, 2434, 2569, 2770, 2878
Bsp1720I	GCTNAGC	2 cut(s)	444, 1674
Bsp19I	CCATGG	1 cut(s)	3217
BspANI	GGCC	6 cut(s)	52, 114, 125, 134, 2520, 2913
BspCNI	CTCAG	8 cut(s)	100, 570, 616, 817, 883, 1192, 1444, 2685
BspFNI	CGCG	1 cut(s)	66
BspHI	TCATGA	3 cut(s)	1819, 2176, 2875
BspLI	GGNNCC	7 cut(s)	47, 119, 471, 513, 760, 1846, 2309
BspMAI	CTGCAG	3 cut(s)	1324, 2252, 3237
BspPI	GGATC	5 cut(s)	315, 1309, 1606, 2429, 2765
BspQI	GCTCTTC	3 cut(s)	287, 605, 831
BspT107I	GGYRCC	2 cut(s)	1844, 2307
BspTNI	GGTCTC	3 cut(s)	45, 103, 1658
BsrDI	GCAATG	3 cut(s)	1390, 1635, 2353
BsrFI	RCCGGY	5 cut(s)	148, 223, 695, 968, 1735
BsrI	ACTGG	2 cut(s)	1267, 1354
BssAI	RCCGGY	5 cut(s)	148, 223, 695, 968, 1735
BssMI	GATC	8 cut(s)	307, 1301, 1598, 1622, 2434, 2569, 2770, 2878
BssSI	CACGAG	1 cut(s)	3182
BssT1I	CCWWGG	7 cut(s)	351, 1004, 1524, 2288, 2856, 3028, 3217
Bst2BI	CACGAG	1 cut(s)	3182
Bst2UI	CCWGG	3 cut(s)	127, 2550, 3264
Bst6I	CTCTTC	8 cut(s)	287, 605, 746, 831, 1019, 1892, 1924, 2178
BstAPI	GCANNNNNTGC	1 cut(s)	3017
BstC8I	GCNNGC	6 cut(s)	1425, 1504, 1545, 2116, 2482, 3111
BstDSI	CCRYGG	1 cut(s)	3217
BstEII	GGTNACC	1 cut(s)	355
BstF5I	GGATG	8 cut(s)	897, 1495, 1959, 1981, 1996, 2507, 2659, 3128
BstFNI	CGCG	1 cut(s)	66
BstHHI	GCGC	4 cut(s)	66, 199, 1193, 3255
BstKTI	GATC	8 cut(s)	310, 1304, 1601, 1625, 2437, 2572, 2773, 2881
BstMAI	GTCTC	6 cut(s)	45, 103, 1658, 1844, 2020, 2675
BstMBI	GATC	8 cut(s)	307, 1301, 1598, 1622, 2434, 2569, 2770, 2878
BstMCI	CGRYCG	3 cut(s)	53, 596, 2952
BstNI	CCWGG	3 cut(s)	127, 2550, 3264
BstNSI	RCATGY	3 cut(s)	1427, 1506, 3063
BstPI	GGTNACC	1 cut(s)	355
BstSCI	CCNGG	7 cut(s)	52, 119, 120, 125, 1949, 2548, 3262
BstSFI	CTRYAG	4 cut(s)	1320, 1683, 2248, 3233
BstSLI	GKGCMC	2 cut(s)	1799, 2509
BstUI	CGCG	1 cut(s)	66
BstV2I	GAAGAC	5 cut(s)	288, 369, 660, 1229, 1484
BstX2I	RGATCY	3 cut(s)	307, 1598, 2770
BstYI	RGATCY	3 cut(s)	307, 1598, 2770
BstZI	CGGCCG	1 cut(s)	50
BsuI	GTATCC	1 cut(s)	1939
BsuRI	GGCC	6 cut(s)	52, 114, 125, 134, 2520, 2913
BtgI	CCRYGG	1 cut(s)	3217
BtgZI	GCGATG	3 cut(s)	312, 1393, 2499
BtrI	CACGTC	2 cut(s)	1572, 2129
BtsCI	GGATG	8 cut(s)	897, 1495, 1959, 1981, 1996, 2507, 2659, 3128
BtsI	GCAGTG	1 cut(s)	681
BtsIMutI	CAGTG	6 cut(s)	681, 1369, 2233, 2507, 2579, 3234
Cac8I	GCNNGC	6 cut(s)	1425, 1504, 1545, 2116, 2482, 3111
CciI	TCATGA	3 cut(s)	1819, 2176, 2875
CfoI	GCGC	4 cut(s)	66, 199, 1193, 3255
Cfr10I	RCCGGY	5 cut(s)	148, 223, 695, 968, 1735
Cfr13I	GGNCC	6 cut(s)	46, 112, 117, 123, 133, 2546
Cfr9I	CCCGGG	1 cut(s)	120
Csp6I	GTAC	8 cut(s)	586, 853, 1456, 1575, 1845, 2337, 2344, 3187
CspAI	ACCGGT	1 cut(s)	968
CviQI	GTAC	8 cut(s)	586, 853, 1456, 1575, 1845, 2337, 2344, 3187
DpnI	GATC	8 cut(s)	309, 1303, 1600, 1624, 2436, 2571, 2772, 2880
DpnII	GATC	8 cut(s)	307, 1301, 1598, 1622, 2434, 2569, 2770, 2878
DriI	GACNNNNNGTC	1 cut(s)	2033
EaeI	YGGCCR	1 cut(s)	50
EagI	CGGCCG	1 cut(s)	50
Eam1104I	CTCTTC	8 cut(s)	287, 605, 746, 831, 1019, 1892, 1924, 2178
Eam1105I	GACNNNNNGTC	1 cut(s)	2033
EarI	CTCTTC	8 cut(s)	287, 605, 746, 831, 1019, 1892, 1924, 2178
EciI	GGCGGA	3 cut(s)	107, 359, 622
EclXI	CGGCCG	1 cut(s)	50
Eco130I	CCWWGG	7 cut(s)	351, 1004, 1524, 2288, 2856, 3028, 3217
Eco147I	AGGCCT	1 cut(s)	2913
Eco31I	GGTCTC	3 cut(s)	45, 103, 1658
Eco47I	GGWCC	3 cut(s)	46, 117, 2546
Eco52I	CGGCCG	1 cut(s)	50
Eco57I	CTGAAG	6 cut(s)	80, 923, 1014, 1722, 1916, 2019
Eco88I	CYCGRG	3 cut(s)	42, 120, 1271
Eco91I	GGTNACC	1 cut(s)	355
EcoO65I	GGTNACC	1 cut(s)	355
EcoRII	CCWGG	3 cut(s)	125, 2548, 3262
EcoT14I	CCWWGG	7 cut(s)	351, 1004, 1524, 2288, 2856, 3028, 3217
EcoT22I	ATGCAT	1 cut(s)	2465
ErhI	CCWWGG	7 cut(s)	351, 1004, 1524, 2288, 2856, 3028, 3217
Esp3I	CGTCTC	1 cut(s)	2020
FauI	CCCGC	1 cut(s)	1275
FauNDI	CATATG	2 cut(s)	2270, 3134
FbaI	TGATCA	1 cut(s)	2878
FblI	GTMKAC	1 cut(s)	2825
FokI	GGATG	8 cut(s)	884, 1502, 1966, 1988, 2003, 2514, 2646, 3115
FspBI	CTAG	8 cut(s)	330, 782, 1005, 1055, 1163, 1620, 1790, 3005
GlaI	GCGC	4 cut(s)	65, 198, 1192, 3254
HaeIII	GGCC	6 cut(s)	52, 114, 125, 134, 2520, 2913
HhaI	GCGC	4 cut(s)	66, 199, 1193, 3255
Hin6I	GCGC	4 cut(s)	64, 197, 1191, 3253
HinP1I	GCGC	4 cut(s)	64, 197, 1191, 3253
HincII	GTYRAC	1 cut(s)	1137
HindII	GTYRAC	1 cut(s)	1137
HindIII	AAGCTT	2 cut(s)	872, 2720
Hpy188I	TCNGA	9 cut(s)	22, 763, 826, 1036, 1702, 1723, 3048, 3069, 3159
Hpy99I	CGWCG	5 cut(s)	26, 212, 323, 326, 2133
HpyCH4IV	ACGT	5 cut(s)	414, 1444, 1571, 2128, 2822
HpySE526I	ACGT	5 cut(s)	414, 1444, 1571, 2128, 2822
HspAI	GCGC	4 cut(s)	64, 197, 1191, 3253
KpnI	GGTACC	1 cut(s)	1848
Ksp22I	TGATCA	1 cut(s)	2878
Kzo9I	GATC	8 cut(s)	307, 1301, 1598, 1622, 2434, 2569, 2770, 2878
LguI	GCTCTTC	3 cut(s)	287, 605, 831
LmnI	GCTCC	4 cut(s)	451, 469, 1649, 2893
LweI	GCATC	8 cut(s)	277, 608, 1370, 1944, 2067, 2374, 2450, 3137
MaeI	CTAG	8 cut(s)	330, 782, 1005, 1055, 1163, 1620, 1790, 3005
MaeII	ACGT	5 cut(s)	414, 1444, 1571, 2128, 2822
MaeIII	GTNAC	7 cut(s)	355, 1285, 1367, 1933, 2473, 3038, 3197
MalI	GATC	8 cut(s)	309, 1303, 1600, 1624, 2436, 2571, 2772, 2880
MboI	GATC	8 cut(s)	307, 1301, 1598, 1622, 2434, 2569, 2770, 2878
MfeI	CAATTG	1 cut(s)	1588
MflI	RGATCY	3 cut(s)	307, 1598, 2770
MhlI	GDGCHC	2 cut(s)	1799, 2509
MlyI	GAGTC	5 cut(s)	356, 635, 902, 1930, 2738
MmeI	TCCRAC	1 cut(s)	45
Mph1103I	ATGCAT	1 cut(s)	2465
MroXI	GAANNNNTTC	2 cut(s)	16, 2651
MseI	TTAA	1 cut(s)	876
MslI	CAYNNNNRTG	1 cut(s)	3133
MspA1I	CMGCKG	5 cut(s)	577, 1199, 1282, 2414, 2960
MspR9I	CCNGG	7 cut(s)	54, 121, 122, 127, 1951, 2550, 3264
MunI	CAATTG	1 cut(s)	1588
Mva1269I	GAATGC	1 cut(s)	2463
MvaI	CCWGG	3 cut(s)	127, 2550, 3264
MvnI	CGCG	1 cut(s)	66
NciI	CCSGG	4 cut(s)	54, 121, 122, 1951
NcoI	CCATGG	1 cut(s)	3217
NdeI	CATATG	2 cut(s)	2270, 3134
NdeII	GATC	8 cut(s)	307, 1301, 1598, 1622, 2434, 2569, 2770, 2878
NlaIV	GGNNCC	7 cut(s)	47, 119, 471, 513, 760, 1846, 2309
NmuCI	GTSAC	4 cut(s)	355, 1285, 1367, 2473
NsiI	ATGCAT	1 cut(s)	2465
NspI	RCATGY	3 cut(s)	1427, 1506, 3063
PaeI	GCATGC	2 cut(s)	1427, 1506
PaeR7I	CTCGAG	1 cut(s)	1271
PagI	TCATGA	3 cut(s)	1819, 2176, 2875
PceI	AGGCCT	1 cut(s)	2913
PciSI	GCTCTTC	3 cut(s)	287, 605, 831
PctI	GAATGC	1 cut(s)	2463
PdmI	GAANNNNTTC	2 cut(s)	16, 2651
PflFI	GACNNNGTC	1 cut(s)	1784
PinAI	ACCGGT	1 cut(s)	968
PleI	GAGTC	5 cut(s)	355, 634, 901, 1929, 2737
PpsI	GAGTC	5 cut(s)	355, 634, 901, 1929, 2737
Psp1406I	AACGTT	1 cut(s)	414
Psp6I	CCWGG	3 cut(s)	125, 2548, 3262
PspEI	GGTNACC	1 cut(s)	355
PspGI	CCWGG	3 cut(s)	125, 2548, 3262
PspN4I	GGNNCC	7 cut(s)	47, 119, 471, 513, 760, 1846, 2309
PspPI	GGNCC	6 cut(s)	46, 112, 117, 123, 133, 2546
PstI	CTGCAG	3 cut(s)	1324, 2252, 3237
PsuI	RGATCY	3 cut(s)	307, 1598, 2770
PsyI	GACNNNGTC	1 cut(s)	1784
PvuII	CAGCTG	3 cut(s)	1199, 2414, 2960
RsaI	GTAC	8 cut(s)	587, 854, 1457, 1576, 1846, 2338, 2345, 3188
RsaNI	GTAC	8 cut(s)	586, 853, 1456, 1575, 1845, 2337, 2344, 3187
RseI	CAYNNNNRTG	1 cut(s)	3133
SapI	GCTCTTC	3 cut(s)	287, 605, 831
SaqAI	TTAA	1 cut(s)	876
Sau3AI	GATC	8 cut(s)	307, 1301, 1598, 1622, 2434, 2569, 2770, 2878
Sau96I	GGNCC	6 cut(s)	46, 112, 117, 123, 133, 2546
SchI	GAGTC	5 cut(s)	356, 635, 902, 1930, 2738
ScrFI	CCNGG	7 cut(s)	54, 121, 122, 127, 1951, 2550, 3264
SduI	GDGCHC	2 cut(s)	1799, 2509
SfaNI	GCATC	8 cut(s)	277, 608, 1370, 1944, 2067, 2374, 2450, 3137
SfcI	CTRYAG	4 cut(s)	1320, 1683, 2248, 3233
SfiI	GGCCNNNNNGGCC	1 cut(s)	131
Sfr274I	CTCGAG	1 cut(s)	1271
SinI	GGWCC	3 cut(s)	46, 117, 2546
SlaI	CTCGAG	1 cut(s)	1271
SmaI	CCCGGG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	3133
SmlI	CTYRAG	2 cut(s)	1271, 1466
SmoI	CTYRAG	2 cut(s)	1271, 1466
SphI	GCATGC	2 cut(s)	1427, 1506
SseBI	AGGCCT	1 cut(s)	2913
SspMI	CTAG	8 cut(s)	330, 782, 1005, 1055, 1163, 1620, 1790, 3005
StuI	AGGCCT	1 cut(s)	2913
StyD4I	CCNGG	7 cut(s)	52, 119, 120, 125, 1949, 2548, 3262
StyI	CCWWGG	7 cut(s)	351, 1004, 1524, 2288, 2856, 3028, 3217
TaiI	ACGT	5 cut(s)	417, 1447, 1574, 2131, 2825
TaqI	TCGA	8 cut(s)	488, 530, 602, 1065, 1272, 1924, 2220, 2916
TaqII	GACCGA	3 cut(s)	582, 1122, 2938
TatI	WGTACW	2 cut(s)	1455, 3186
TauI	GCSGC	3 cut(s)	577, 844, 1117
Tru1I	TTAA	1 cut(s)	876
Tru9I	TTAA	1 cut(s)	876
TscAI	CASTG	6 cut(s)	681, 1376, 2233, 2514, 2579, 3234
TseFI	GTSAC	4 cut(s)	355, 1285, 1367, 2473
Tsp45I	GTSAC	4 cut(s)	355, 1285, 1367, 2473
TspGWI	ACGGA	3 cut(s)	24, 29, 703
TspMI	CCCGGG	1 cut(s)	120
TspRI	CASTG	6 cut(s)	681, 1376, 2233, 2514, 2579, 3234
Tth111I	GACNNNGTC	1 cut(s)	1784
VneI	GTGCAC	1 cut(s)	2505
VpaK11BI	GGWCC	3 cut(s)	46, 117, 2546
XapI	RAATTY	3 cut(s)	2585, 3096, 3146
XceI	RCATGY	3 cut(s)	1427, 1506, 3063
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2646
XhoI	CTCGAG	1 cut(s)	1271
XmaI	CCCGGG	1 cut(s)	120
XmaJI	CCTAGG	1 cut(s)	1004
XmiI	GTMKAC	1 cut(s)	2825
XmnI	GAANNNNTTC	2 cut(s)	16, 2651
XspI	CTAG	8 cut(s)	330, 782, 1005, 1055, 1163, 1620, 1790, 3005
Zsp2I	ATGCAT	1 cut(s)	2465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.