Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0010740

Physical Location & Seq

Genomic Coordinates Reverse (-)

14145717 .. 14153111

Gene Structure 7395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1149500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2757 bp

ATGGCGAAGGGTACGGATTCGGAGGAGTTTGTGGTGATGTCTAATGTCCGGACGGGCCTGAAACGCGAGTTCGCGTTTTCGTTGAAGGCGCAGGCCGAAATGTCTGGCTCTTTAGGGCGGACTCGGGGCAGTAGGGCCCAGAACGATGGCTGTAAGAGGTTGAAGACGGAGGAGCGCGACGGTGGTGATGGTGATGAGAAATTTGGGGGTGGGGAGATGGGGGAGGGGGAGATTGTGAAGGTTAAGGAGGATTTGGAGGAGGCTATGAGCGAAGAGGATGCAAAAAGCGATGTGGTGGACCTCACGAGCGAAGACGAGCCGAAATCCCATGTGGGTGAGTTTGTGCTAAGCGAGAGGGTTGGCAAAGACGAGTTGAAGCACGGTGTGTTGGAGATGGCAGTAGATGACGAGCCCCAGACCGGTTGCATTGGAGATAATGAACCCAAAAAGCCTTTGGTGGACGAAGAAGTCCCTGTTTTGATTGAGAACGGCAGCGTTAAGGTGGAAGATGAGGTGATTGAGAAGCCTCTGAGGAGGTTCACTCGGTCAGCATTGAAGCTTGAGGCAGAAAAAATGCAGAATTCACCTGCAGAAGGTTATACCCAAGAGATAGATTCGGAGATTCAGAAAAGCCCTTTTGTTACTCCAATGAAACTTGATACGAAAATGCCGAAGATGGTGAGGAAGCTCAGTAAACTGAAAGAACTTCTTGATACCGGTATTCTCGAGGGGCAGCCAGTCAAATACCTTAGACGATCAAAGATAAGAGAATCTGGAGAAACTGGGCTTAGGGGAGTGATTACGGGCTCTTCGATATTGTGTCACTGTGATTCTTGCAAAGGAACTGAAGTTATTACACCTCCTGTGTTTGAGCTGCATGCGGGTAGTTCAAATAAACGTCCTCCGGAGTATATATATCTTGAGAATGGGAAGACCCTTCGGGATGTCATGACTGTATGCGAAAATTCTCCATTGGAAATTTTGGAAGAAGCTGTCCGACTTGTCATTGGTTGCTCATCCATAAGCAAATGTACGATCTGTCTCAATTGCAAAGAATCTATTGACAAAGACAGTACAAGGTCAGCAGTGATACTTTGTAGCTCATGCATGGAGTTAAAAGAGTCTGGAGCTAGGCCTGCTGTAGCTGCTAACCAGAGTGACGAATCACGAAAGCTGGTTACAGTACCATATAGTCCTGATGCCTTGTCAAAATGTAGCTTACCATATCAAGTTACAGTTCCAAAGCATCCTCATACTGTGCCAATGTGTAGCTCATCAAAGCCAGTTGAAGTTCAAAAGCGTCCTCATAACGTGCCAGAGCGTCACTCCTCAGAAAGTAAGAGTCAGGGAAGAGTAACCAAAAAGGATCTTCGGTTGCACAAGTTAGTTTTTGAGGAAGATGTCTTGCCGGATGGCACAGAAGTAGGCTATTTTTCTAAGGGAAAGAAATTGTTGGTTGGTTATAAAAAGGGTCCTGGCATTGTTTGTGGTTGCTGCAATAATGAGGTCAGTGCCTCGACATTTGAAGCGCATGCTGGTTTTAAGTCACGTCGCAAGCCTTACCTGAACATTTACACATCTAATGGGGTATCTCTCCATGAATTGGCATTATCTCTATCTAGTCGTCGGAAGTGGTCTACCGAGCATAATGATGACCTATGCTCCATCTGCAAAGCTGGAGGAGATCTCTTGTGCTGTGAGAATTGTCCAAGGGCTTTTCACAAAGAGTGCCTTTCTCTACCAATTGTCCCTGGCGATACTTGGTACTGTAAGAATTGCCAGACTATGTTTGAGAGAGAGAAATATGTGGAGCATAATGCCAATGCTGTTGCAGCTGGAAGGGTTGCAGGGGTCGATTCCATAGAACAAATAACCAACCGATGCATTCGTATTGTCACAACTTTCGAGGAGAAACTTGGTGGATGTGCACTGTGCAGTAGCCATGAGTTCAGCGGCTCTGATTTTGGTCCCGGCACAGTTATTTTGTGTGATCAGTGTGAAAAGGAGTATCATGTAGGTTGTTTGAAGGATAAAGGAATTGAAGATTTGAAGGAATTACCACAAGACAAGTGGTTCTGTTGCTCAGATTGCCTTAGGGTTCATTCAGCTTTGCAGAAGTTGGTAGTTCATGGGGAACAGAAGCTTCCAGACTCCCTCCTGAATGTTGTAAGGAAGAAGCATAATGAGGAAGGTCCGGAGAGTGGAGCTAATCTTGAAATAAAATGGAGGGTGCTGAATGGGAAAATGTCTACTGATGATGAAAGTGTACAGTTGCTTTCCAAGGCTCTTGAAATCTTCCATGATCGTTTTTCCCCAATAATTGATTCTACTTCACGCCAGGACTTCATCAAAGAAATGCTTTATGGGAGGACCATCCAGACCCAAGATTTTGGTGGGATGTACTGTGCAATTATTACAGTAAACCAATTAGTCGTGTCAGCTGGAATGTTTCGTATCTATGGAGCCGAAGTGGCAGAGCTTCCTTTAGTGGCTACATGTGCTGATTTTGAAGGACAGGGTTACTTCCAGACGTTGTTTTCATGTATTGAGAGGCTTCTTGCGTTTCTAAACGTGAAAAGCCTTGTGCTGCCAGCCGCTAGTGAGGCAGAATCAATATGGAAAAAGAGATTTGGTTTTGAGAAGTTAACCGAAAATGAGATACACGATTACAGGAAAAGATACCAAATGATGATCTTCCAAGGGACTAACATGCTGCGGAAGCCCGTCCCCAAGTGCCGAATTCTTAAGTCCCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

919

Amino Acids

102.12

Weight (kDa)

6.03

Isoelectric Point (pI)

47.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	265 - 318	2.5e-14	Tify domain binding domain
TDBD	PF16135	490 - 535	1.7e-13	Tify domain binding domain
PHD-1st_NSD	PF23011	550 - 594	3.1e-07	Histone-lysine N-methyltransferase NSD-like, PHD zinc finger 1
PHD	PF00628	554 - 593	3.8e-07	PHD-finger
IDM1_C	PF23209	770 - 908	1.8e-52	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0010740)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G27980
fragaria_vesca	FvH4_3g30510 FvH4_3g30510 FvH4_3g30510
malus_domestica	MD03G1127900.v1.1 MD11G1149500.v1.1
prunus_persica	Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1 Prupe.6G113900_v2.0.a1
pyrus_communis	pycom11g12240
rosa_chinensis	RchiOBHm_Chr5g0056471
rosa_laevigata	RLG00000035101
rosa_multiflora	Rmu_sc0002761.1_g000015
rosa_roxburghii	Rroxscaffold_1G00023850
rosa_rugosa	Rorug05G0300200
rosa_samantha	Rh5AG370700 Rh5BG382000 Rh5CG405100 Rh5DG394900
rosa_wichuraiana	Rw5G034720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1464
AarI	CACCTGC	1 cut(s)	595
AasI	GACNNNNNNGTC	1 cut(s)	467
Acc36I	ACCTGC	1 cut(s)	595
AccB7I	CCANNNNNTGG	1 cut(s)	1603
AccI	GTMKAC	2 cut(s)	1637, 2249
AccII	CGCG	3 cut(s)	66, 74, 177
AccIII	TCCGGA	3 cut(s)	48, 904, 2194
AciI	CCGC	5 cut(s)	118, 881, 1953, 2595, 2716
AclWI	GGATC	1 cut(s)	1374
AcsI	RAATTY	5 cut(s)	200, 580, 964, 978, 2739
AcuI	CTGAAG	1 cut(s)	867
AdeI	CACNNNGTG	1 cut(s)	385
AfaI	GTAC	7 cut(s)	13, 1033, 1075, 1185, 1766, 2268, 2402
AfiI	CCNNNNNNNGG	4 cut(s)	419, 593, 1603, 2201
AflII	CTTAAG	1 cut(s)	2744
AflIII	ACRYGT	1 cut(s)	2495
AgeI	ACCGGT	2 cut(s)	419, 716
AjiI	CACGTC	1 cut(s)	1550
AjnI	CCWGG	3 cut(s)	1474, 1750, 2337
AjuI	GAANNNNNNNTTGG	2 cut(s)	2308, 2340
Alw21I	GWGCWC	1 cut(s)	1930
Alw26I	GTCTC	1 cut(s)	1046
Alw44I	GTGCAC	1 cut(s)	1926
AlwI	GGATC	1 cut(s)	1374
Ama87I	CYCGRG	2 cut(s)	123, 725
Aor13HI	TCCGGA	3 cut(s)	48, 904, 2194
AoxI	GGCC	4 cut(s)	55, 93, 135, 1133
ApaI	GGGCCC	1 cut(s)	139
ApaLI	GTGCAC	1 cut(s)	1926
ApeKI	GCWGC	8 cut(s)	492, 733, 874, 1145, 1494, 1832, 2587, 2713
ApoI	RAATTY	5 cut(s)	200, 580, 964, 978, 2739
AsiGI	ACCGGT	2 cut(s)	419, 716
AspLEI	GCGC	3 cut(s)	91, 177, 1531
AspS9I	GGNCC	8 cut(s)	55, 135, 136, 298, 1472, 1967, 2192, 2370
AsuC2I	CCSGG	1 cut(s)	1971
AsuHPI	GGTGA	7 cut(s)	46, 197, 203, 347, 526, 576, 691
AvaI	CYCGRG	2 cut(s)	123, 725
AvaII	GGWCC	5 cut(s)	298, 1472, 1967, 2192, 2370
AxyI	CCTNAGG	1 cut(s)	2093
BaeGI	GKGCMC	2 cut(s)	139, 1930
BanII	GRGCYC	3 cut(s)	139, 414, 809
BauI	CACGAG	1 cut(s)	304
BbsI	GAAGAC	3 cut(s)	170, 318, 938
Bbv12I	GWGCWC	1 cut(s)	1930
BbvI	GCAGC	8 cut(s)	504, 745, 861, 1132, 1481, 1844, 2574, 2700
BccI	CCATC	8 cut(s)	140, 182, 211, 388, 670, 1406, 1673, 2381
BceAI	ACGGC	1 cut(s)	505
BcgI	CGANNNNNNTGC	2 cut(s)	260, 294
BciT130I	CCWGG	3 cut(s)	1476, 1752, 2339
BclI	TGATCA	1 cut(s)	1990
BcnI	CCSGG	1 cut(s)	1971
BcoDI	GTCTC	1 cut(s)	1046
BfaI	CTAG	3 cut(s)	1131, 1620, 2598
BfmI	CTRYAG	2 cut(s)	588, 1140
BfrI	CTTAAG	1 cut(s)	2744
BfuAI	ACCTGC	1 cut(s)	595
BglI	GCCNNNNNGGC	1 cut(s)	2471
BglII	AGATCT	1 cut(s)	1684
BlpI	GCTNAGC	1 cut(s)	347
Bme1390I	CCNGG	4 cut(s)	1476, 1752, 1971, 2339
Bme18I	GGWCC	5 cut(s)	298, 1472, 1967, 2192, 2370
BmeT110I	CYCGRG	2 cut(s)	123, 725
BmgBI	CACGTC	1 cut(s)	1550
BmgT120I	GGNCC	8 cut(s)	55, 135, 136, 298, 1472, 1967, 2192, 2370
BmiI	GGNNCC	4 cut(s)	137, 1473, 1969, 2464
BmrFI	CCNGG	4 cut(s)	1476, 1752, 1971, 2339
BmrI	ACTGGG	1 cut(s)	792
BmsI	GCATC	4 cut(s)	268, 1189, 1255, 1871
BmuI	ACTGGG	1 cut(s)	792
BpiI	GAAGAC	3 cut(s)	170, 318, 938
BplI	GAGNNNNNCTC	6 cut(s)	526, 558, 1310, 1342, 1671, 1703
BpmI	CTGGAG	3 cut(s)	795, 1146, 1698
Bpu10I	CCTNAGC	1 cut(s)	788
Bpu1102I	GCTNAGC	1 cut(s)	347
BpuEI	CTTGAG	2 cut(s)	581, 941
BpuMI	CCSGG	1 cut(s)	1971
BsaJI	CCNNGG	4 cut(s)	1709, 1750, 2280, 2698
BsaWI	WCCGGW	5 cut(s)	48, 419, 716, 904, 2194
BsaXI	ACNNNNNCTCC	4 cut(s)	1646, 1676, 2454, 2484
Bsc4I	CCNNNNNNNGG	4 cut(s)	419, 593, 1603, 2201
Bse118I	RCCGGY	2 cut(s)	419, 716
Bse1I	ACTGG	3 cut(s)	737, 787, 1283
Bse21I	CCTNAGG	1 cut(s)	2093
BseAI	TCCGGA	3 cut(s)	48, 904, 2194
BseBI	CCWGG	3 cut(s)	1476, 1752, 2339
BseDI	CCNNGG	4 cut(s)	1709, 1750, 2280, 2698
BseGI	GGATG	8 cut(s)	283, 949, 1016, 1246, 1417, 1928, 2373, 2403
BseLI	CCNNNNNNNGG	4 cut(s)	419, 593, 1603, 2201
BseMII	CTCAG	4 cut(s)	521, 703, 1344, 2097
BseNI	ACTGG	3 cut(s)	737, 787, 1283
BseRI	GAGGAG	7 cut(s)	38, 185, 272, 547, 1318, 1695, 1922
BseSI	GKGCMC	2 cut(s)	139, 1930
BseXI	GCAGC	8 cut(s)	504, 745, 861, 1132, 1481, 1844, 2574, 2700
BsgI	GTGCAG	1 cut(s)	1954
Bsh1236I	CGCG	3 cut(s)	66, 74, 177
BshFI	GGCC	4 cut(s)	57, 95, 137, 1135
BshTI	ACCGGT	2 cut(s)	419, 716
BsiHKAI	GWGCWC	1 cut(s)	1930
BsiHKCI	CYCGRG	2 cut(s)	123, 725
BsiSI	CCGG	7 cut(s)	49, 420, 717, 905, 1409, 1971, 2195
BslFI	GGGAC	6 cut(s)	455, 1733, 1953, 2711, 2716, 2734
BslI	CCNNNNNNNGG	4 cut(s)	419, 593, 1603, 2201
BsmAI	GTCTC	1 cut(s)	1046
BsmFI	GGGAC	6 cut(s)	455, 1733, 1953, 2711, 2716, 2734
BsmI	GAATGC	1 cut(s)	1884
BsnI	GGCC	4 cut(s)	57, 95, 137, 1135
BsoBI	CYCGRG	2 cut(s)	123, 725
Bsp120I	GGGCCC	1 cut(s)	135
Bsp1286I	GDGCHC	4 cut(s)	139, 414, 809, 1930
Bsp13I	TCCGGA	3 cut(s)	48, 904, 2194
Bsp1407I	TGTACA	1 cut(s)	2266
Bsp143I	GATC	7 cut(s)	755, 1035, 1366, 1684, 1990, 2302, 2691
Bsp1720I	GCTNAGC	1 cut(s)	347
BspACI	CCGC	5 cut(s)	118, 881, 1953, 2595, 2716
BspANI	GGCC	4 cut(s)	57, 95, 137, 1135
BspCNI	CTCAG	4 cut(s)	522, 702, 1343, 2096
BspEI	TCCGGA	3 cut(s)	48, 904, 2194
BspFNI	CGCG	3 cut(s)	66, 74, 177
BspHI	TCATGA	1 cut(s)	948
BspLI	GGNNCC	4 cut(s)	137, 1473, 1969, 2464
BspMAI	CTGCAG	1 cut(s)	592
BspMI	ACCTGC	1 cut(s)	595
BspPI	GGATC	1 cut(s)	1374
BspQI	GCTCTTC	1 cut(s)	814
BspTI	CTTAAG	1 cut(s)	2744
BsrFI	RCCGGY	2 cut(s)	419, 716
BsrGI	TGTACA	1 cut(s)	2266
BsrI	ACTGG	3 cut(s)	737, 787, 1283
BssAI	RCCGGY	2 cut(s)	419, 716
BssECI	CCNNGG	4 cut(s)	1709, 1750, 2280, 2698
BssMI	GATC	7 cut(s)	755, 1035, 1366, 1684, 1990, 2302, 2691
BssSI	CACGAG	1 cut(s)	304
BssT1I	CCWWGG	3 cut(s)	1709, 2280, 2698
Bst2BI	CACGAG	1 cut(s)	304
Bst2UI	CCWGG	3 cut(s)	1476, 1752, 2339
Bst6I	CTCTTC	3 cut(s)	267, 814, 1345
BstAFI	CTTAAG	1 cut(s)	2744
BstAUI	TGTACA	1 cut(s)	2266
BstC8I	GCNNGC	6 cut(s)	93, 879, 1137, 1533, 1556, 2592
BstDEI	CTNAG	9 cut(s)	347, 530, 689, 749, 788, 1330, 1437, 2083, 2093
BstENI	CCTNNNNNAGG	1 cut(s)	591
BstF5I	GGATG	8 cut(s)	283, 949, 1016, 1246, 1417, 1928, 2373, 2403
BstFNI	CGCG	3 cut(s)	66, 74, 177
BstHHI	GCGC	3 cut(s)	91, 177, 1531
BstKTI	GATC	7 cut(s)	758, 1038, 1369, 1687, 1993, 2305, 2694
BstMAI	GTCTC	1 cut(s)	1046
BstMBI	GATC	7 cut(s)	755, 1035, 1366, 1684, 1990, 2302, 2691
BstNI	CCWGG	3 cut(s)	1476, 1752, 2339
BstNSI	RCATGY	4 cut(s)	881, 1535, 2499, 2713
BstSCI	CCNGG	4 cut(s)	1474, 1750, 1969, 2337
BstSFI	CTRYAG	2 cut(s)	588, 1140
BstSLI	GKGCMC	2 cut(s)	139, 1930
BstUI	CGCG	3 cut(s)	66, 74, 177
BstV1I	GCAGC	8 cut(s)	504, 745, 861, 1132, 1481, 1844, 2574, 2700
BstV2I	GAAGAC	3 cut(s)	170, 318, 938
BstX2I	RGATCY	2 cut(s)	1366, 1684
BstXI	CCANNNNNNTGG	2 cut(s)	146, 2390
BstYI	RGATCY	2 cut(s)	1366, 1684
Bsu36I	CCTNAGG	1 cut(s)	2093
BsuRI	GGCC	4 cut(s)	57, 95, 137, 1135
BtgZI	GCGATG	1 cut(s)	303
BtrI	CACGTC	1 cut(s)	1550
BtsCI	GGATG	8 cut(s)	283, 949, 1016, 1246, 1417, 1928, 2373, 2403
BtsI	GCAGTG	1 cut(s)	1092
BtsIMutI	CAGTG	5 cut(s)	823, 1092, 1516, 1928, 2000
BveI	ACCTGC	1 cut(s)	595
Cac8I	GCNNGC	6 cut(s)	93, 879, 1137, 1533, 1556, 2592
CciI	TCATGA	1 cut(s)	948
CfoI	GCGC	3 cut(s)	91, 177, 1531
Cfr10I	RCCGGY	2 cut(s)	419, 716
Cfr13I	GGNCC	8 cut(s)	55, 135, 136, 298, 1472, 1967, 2192, 2370
CseI	GACGC	2 cut(s)	1289, 1310
Csp6I	GTAC	7 cut(s)	12, 1032, 1074, 1184, 1765, 2267, 2401
CspAI	ACCGGT	2 cut(s)	419, 716
CspCI	CAANNNNNGTGG	2 cut(s)	2051, 2086
CviQI	GTAC	7 cut(s)	12, 1032, 1074, 1184, 1765, 2267, 2401
DdeI	CTNAG	9 cut(s)	347, 530, 689, 749, 788, 1330, 1437, 2083, 2093
DpnI	GATC	7 cut(s)	757, 1037, 1368, 1686, 1992, 2304, 2693
DpnII	GATC	7 cut(s)	755, 1035, 1366, 1684, 1990, 2302, 2691
DraIII	CACNNNGTG	1 cut(s)	385
DrdI	GACNNNNNNGTC	1 cut(s)	467
DseDI	GACNNNNNNGTC	1 cut(s)	467
Eam1104I	CTCTTC	3 cut(s)	267, 814, 1345
EarI	CTCTTC	3 cut(s)	267, 814, 1345
EciI	GGCGGA	1 cut(s)	133
Eco130I	CCWWGG	3 cut(s)	1709, 2280, 2698
Eco147I	AGGCCT	1 cut(s)	1135
Eco24I	GRGCYC	3 cut(s)	139, 414, 809
Eco47I	GGWCC	5 cut(s)	298, 1472, 1967, 2192, 2370
Eco57I	CTGAAG	1 cut(s)	867
Eco81I	CCTNAGG	1 cut(s)	2093
Eco88I	CYCGRG	2 cut(s)	123, 725
EcoNI	CCTNNNNNAGG	1 cut(s)	591
EcoO109I	RGGNCCY	2 cut(s)	135, 1472
EcoRI	GAATTC	2 cut(s)	580, 2739
EcoRII	CCWGG	3 cut(s)	1474, 1750, 2337
EcoT14I	CCWWGG	3 cut(s)	1709, 2280, 2698
EcoT22I	ATGCAT	2 cut(s)	1109, 1886
EcoT38I	GRGCYC	3 cut(s)	139, 414, 809
ErhI	CCWWGG	3 cut(s)	1709, 2280, 2698
FalI	AAGNNNNNCTT	6 cut(s)	693, 725, 1716, 1748, 2343, 2375
FaqI	GGGAC	6 cut(s)	455, 1733, 1953, 2711, 2716, 2734
FauI	CCCGC	1 cut(s)	874
FbaI	TGATCA	1 cut(s)	1990
FblI	GTMKAC	2 cut(s)	1637, 2249
FokI	GGATG	8 cut(s)	290, 956, 1003, 1233, 1424, 1935, 2360, 2410
FriOI	GRGCYC	3 cut(s)	139, 414, 809
FspBI	CTAG	3 cut(s)	1131, 1620, 2598
GlaI	GCGC	3 cut(s)	90, 176, 1530
GsuI	CTGGAG	3 cut(s)	795, 1146, 1698
HaeIII	GGCC	4 cut(s)	57, 95, 137, 1135
HapII	CCGG	7 cut(s)	49, 420, 717, 905, 1409, 1971, 2195
HgaI	GACGC	2 cut(s)	1289, 1310
HhaI	GCGC	3 cut(s)	91, 177, 1531
Hin6I	GCGC	3 cut(s)	89, 175, 1529
HinP1I	GCGC	3 cut(s)	89, 175, 1529
HincII	GTYRAC	1 cut(s)	2646
HindII	GTYRAC	1 cut(s)	2646
HindIII	AAGCTT	2 cut(s)	557, 2141
HpaI	GTTAAC	1 cut(s)	2646
HpaII	CCGG	7 cut(s)	49, 420, 717, 905, 1409, 1971, 2195
HphI	GGTGA	7 cut(s)	46, 197, 203, 347, 526, 576, 691
Hpy188I	TCNGA	9 cut(s)	22, 531, 619, 627, 998, 1333, 1629, 1960, 2086
Hpy99I	CGWCG	3 cut(s)	182, 1554, 1629
HpyAV	CCTTC	9 cut(s)	79, 232, 587, 947, 1833, 2020, 2044, 2183, 2504
HpyCH4IV	ACGT	5 cut(s)	898, 1311, 1549, 2531, 2571
HpyF3I	CTNAG	9 cut(s)	347, 530, 689, 749, 788, 1330, 1437, 2083, 2093
HpySE526I	ACGT	5 cut(s)	898, 1311, 1549, 2531, 2571
HspAI	GCGC	3 cut(s)	89, 175, 1529
Kpn2I	TCCGGA	3 cut(s)	48, 904, 2194
Ksp22I	TGATCA	1 cut(s)	1990
KspAI	GTTAAC	1 cut(s)	2646
Kzo9I	GATC	7 cut(s)	755, 1035, 1366, 1684, 1990, 2302, 2691
LguI	GCTCTTC	1 cut(s)	814
LmnI	GCTCC	6 cut(s)	172, 1127, 1667, 1810, 2204, 2462
Lsp1109I	GCAGC	8 cut(s)	504, 745, 861, 1132, 1481, 1844, 2574, 2700
LweI	GCATC	4 cut(s)	268, 1189, 1255, 1871
MaeI	CTAG	3 cut(s)	1131, 1620, 2598
MaeII	ACGT	5 cut(s)	898, 1311, 1549, 2531, 2571
MalI	GATC	7 cut(s)	757, 1037, 1368, 1686, 1992, 2304, 2693
MboI	GATC	7 cut(s)	755, 1035, 1366, 1684, 1990, 2302, 2691
MfeI	CAATTG	2 cut(s)	1045, 1743
MflI	RGATCY	2 cut(s)	1366, 1684
MhlI	GDGCHC	4 cut(s)	139, 414, 809, 1930
MlyI	GAGTC	4 cut(s)	115, 1130, 1351, 2144
MmeI	TCCRAC	3 cut(s)	369, 1021, 1607
Mph1103I	ATGCAT	2 cut(s)	1109, 1886
MroI	TCCGGA	3 cut(s)	48, 904, 2194
MseI	TTAA	7 cut(s)	243, 498, 1115, 1542, 2645, 2745, 2755
MslI	CAYNNNNRTG	2 cut(s)	333, 1650
MspA1I	CMGCKG	3 cut(s)	1835, 1953, 2441
MspCI	CTTAAG	1 cut(s)	2744
MspI	CCGG	7 cut(s)	49, 420, 717, 905, 1409, 1971, 2195
MspR9I	CCNGG	4 cut(s)	1476, 1752, 1971, 2339
MunI	CAATTG	2 cut(s)	1045, 1743
Mva1269I	GAATGC	1 cut(s)	1884
MvaI	CCWGG	3 cut(s)	1476, 1752, 2339
MvnI	CGCG	3 cut(s)	66, 74, 177
NciI	CCSGG	1 cut(s)	1971
NdeII	GATC	7 cut(s)	755, 1035, 1366, 1684, 1990, 2302, 2691
NlaIV	GGNNCC	4 cut(s)	137, 1473, 1969, 2464
NmuCI	GTSAC	5 cut(s)	821, 1157, 1322, 1545, 1894
NsiI	ATGCAT	2 cut(s)	1109, 1886
NspI	RCATGY	4 cut(s)	881, 1535, 2499, 2713
PaeI	GCATGC	2 cut(s)	881, 1535
PaeR7I	CTCGAG	1 cut(s)	725
PagI	TCATGA	1 cut(s)	948
PaqCI	CACCTGC	1 cut(s)	595
PceI	AGGCCT	1 cut(s)	1135
PciI	ACATGT	1 cut(s)	2495
PciSI	GCTCTTC	1 cut(s)	814
PcsI	WCGNNNNNNNCGW	2 cut(s)	668, 809
PctI	GAATGC	1 cut(s)	1884
PflMI	CCANNNNNTGG	1 cut(s)	1603
PinAI	ACCGGT	2 cut(s)	419, 716
PleI	GAGTC	4 cut(s)	115, 1129, 1350, 2144
PpsI	GAGTC	4 cut(s)	115, 1129, 1350, 2144
PpuMI	RGGWCCY	1 cut(s)	1472
PscI	ACATGT	1 cut(s)	2495
PsiI	TTATAA	1 cut(s)	1464
Psp5II	RGGWCCY	1 cut(s)	1472
Psp6I	CCWGG	3 cut(s)	1474, 1750, 2337
PspGI	CCWGG	3 cut(s)	1474, 1750, 2337
PspN4I	GGNNCC	4 cut(s)	137, 1473, 1969, 2464
PspOMI	GGGCCC	1 cut(s)	135
PspPI	GGNCC	8 cut(s)	55, 135, 136, 298, 1472, 1967, 2192, 2370
PspPPI	RGGWCCY	1 cut(s)	1472
PstI	CTGCAG	1 cut(s)	592
PsuI	RGATCY	2 cut(s)	1366, 1684
PvuII	CAGCTG	2 cut(s)	1835, 2441
RsaI	GTAC	7 cut(s)	13, 1033, 1075, 1185, 1766, 2268, 2402
RsaNI	GTAC	7 cut(s)	12, 1032, 1074, 1184, 1765, 2267, 2401
RseI	CAYNNNNRTG	2 cut(s)	333, 1650
SapI	GCTCTTC	1 cut(s)	814
SaqAI	TTAA	7 cut(s)	243, 498, 1115, 1542, 2645, 2745, 2755
Sau3AI	GATC	7 cut(s)	755, 1035, 1366, 1684, 1990, 2302, 2691
Sau96I	GGNCC	8 cut(s)	55, 135, 136, 298, 1472, 1967, 2192, 2370
SchI	GAGTC	4 cut(s)	115, 1130, 1351, 2144
ScrFI	CCNGG	4 cut(s)	1476, 1752, 1971, 2339
SduI	GDGCHC	4 cut(s)	139, 414, 809, 1930
SfaNI	GCATC	4 cut(s)	268, 1189, 1255, 1871
SfcI	CTRYAG	2 cut(s)	588, 1140
Sfr274I	CTCGAG	1 cut(s)	725
SinI	GGWCC	5 cut(s)	298, 1472, 1967, 2192, 2370
SlaI	CTCGAG	1 cut(s)	725
SmiMI	CAYNNNNRTG	2 cut(s)	333, 1650
SmlI	CTYRAG	4 cut(s)	560, 725, 920, 2744
SmoI	CTYRAG	4 cut(s)	560, 725, 920, 2744
SphI	GCATGC	2 cut(s)	881, 1535
SseBI	AGGCCT	1 cut(s)	1135
SsiI	CCGC	5 cut(s)	118, 881, 1953, 2595, 2716
SspMI	CTAG	3 cut(s)	1131, 1620, 2598
StuI	AGGCCT	1 cut(s)	1135
StyD4I	CCNGG	4 cut(s)	1474, 1750, 1969, 2337
StyI	CCWWGG	3 cut(s)	1709, 2280, 2698
TaiI	ACGT	5 cut(s)	901, 1314, 1552, 2534, 2574
TaqI	TCGA	5 cut(s)	726, 812, 1517, 1854, 1905
TaqII	GACCGA	1 cut(s)	534
TatI	WGTACW	3 cut(s)	1073, 2266, 2400
TauI	GCSGC	2 cut(s)	1956, 2597
Tru1I	TTAA	7 cut(s)	243, 498, 1115, 1542, 2645, 2745, 2755
Tru9I	TTAA	7 cut(s)	243, 498, 1115, 1542, 2645, 2745, 2755
TscAI	CASTG	5 cut(s)	830, 1092, 1516, 1935, 2000
TseFI	GTSAC	5 cut(s)	821, 1157, 1322, 1545, 1894
TseI	GCWGC	8 cut(s)	492, 733, 874, 1145, 1494, 1832, 2587, 2713
Tsp45I	GTSAC	5 cut(s)	821, 1157, 1322, 1545, 1894
TspDTI	ATGAA	8 cut(s)	453, 665, 1614, 2090, 2117, 2274, 2335, 2529
TspGWI	ACGGA	2 cut(s)	29, 182
TspRI	CASTG	5 cut(s)	830, 1092, 1516, 1935, 2000
Van91I	CCANNNNNTGG	1 cut(s)	1603
Vha464I	CTTAAG	1 cut(s)	2744
VneI	GTGCAC	1 cut(s)	1926
VpaK11BI	GGWCC	5 cut(s)	298, 1472, 1967, 2192, 2370
XagI	CCTNNNNNAGG	1 cut(s)	591
XapI	RAATTY	5 cut(s)	200, 580, 964, 978, 2739
XceI	RCATGY	4 cut(s)	881, 1535, 2499, 2713
XcmI	CCANNNNNNNNNTGG	3 cut(s)	451, 2067, 2390
XhoI	CTCGAG	1 cut(s)	725
XmiI	GTMKAC	2 cut(s)	1637, 2249
XspI	CTAG	3 cut(s)	1131, 1620, 2598
Zsp2I	ATGCAT	2 cut(s)	1109, 1886

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.