AT2G28140

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0011938
Physical Location & Seq
Forward (+)
11994954 .. 11996236
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G28140.1

Sequence Viewer

Length: 636 bp
ATGGAGAGACAGCAGCAAAATTATCTACTTAGTTGGAGTCACCAAAACCAGTGTGGTATAAAGACAATAGAAGAGCTTAGACATTCTCTTCTTCACACAACAATGGAGTTAGAGCAAACAAGAATGGTGGCCAGCGAAGAACTCATTGCCAAAGACGACCAGATAATGCAGCTCAAAGATCTTCTCAACAAAGCTATCAAAGAGAAAGATGAAGCACAAGAGAGATACAAAAGGATTCTTCTTGACCAAAACTTCCTCCTTCAACACCAAACGGACGAAGAGCAAGATCCAAACATCAATGGGTTTCACTCATCGGATGGTGAAGAAAGCATTGTCTCATCTTTTGAACCGCCGGTGGAAATTGAGTTAGATTTTCCGGAGATGACTTTACCGGAGAAAGGGAAGCTTTTAAAGGCGGTGGTGAAGGCAGGGCCTTTGCTTCAGACTCTACTTCTAGCTGGACAGCTTCCACAATGGCGTCACCCGCCACCACAACTTGAGTCCTTTGAAATTCCACCGGTGATTATTGCTGAAGGATCACCATTGTCACAAGATAGTTGTGGGAATAATCTAAACAGGAAGAGGGTTCACTGTGATTCCAAAAGAGAGACCAAGTACCAAAGGCTCTTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

211

Amino Acids

24.34

Weight (kDa)

5.22

Isoelectric Point (pI)

60.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 21 - 209 7.9e-56 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28140 AT3G44940 AT5G22930
fragaria_vesca FvH4_3g30750 FvH4_3g30750
malus_domestica MD03G1126900.v1.1 MD11G1147500.v1.1
prunus_persica Prupe.6G112200_v2.0.a1
pyrus_communis pycom11g12080
rosa_chinensis RchiOBHm_Chr5g0056941
rosa_laevigata RLG00000035141
rosa_multiflora Rmu_sc0002035.1_g000007
rosa_roxburghii Rroxscaffold_1G00023250
rosa_rugosa Rorug05G0304500
rosa_samantha Rh5AG373900 Rh5BG384900 Rh5CG408200 Rh5DG398300
rosa_wichuraiana Rw5G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 376
AciI CCGC 3 cut(s) 350, 416, 485
AclWI GGATC 2 cut(s) 281, 544
AcoI YGGCCR 1 cut(s) 129
AcsI RAATTY 1 cut(s) 510
AcuI CTGAAG 2 cut(s) 425, 552
AcyI GRCGYC 1 cut(s) 478
AfaI GTAC 1 cut(s) 617
AfiI CCNNNNNNNGG 1 cut(s) 398
AgeI ACCGGT 1 cut(s) 517
AgsI TTSAA 3 cut(s) 263, 347, 509
AluBI AGCT 6 cut(s) 76, 172, 194, 406, 458, 466
AluI AGCT 6 cut(s) 76, 172, 194, 406, 458, 466
Alw26I GTCTC 2 cut(s) 340, 602
AlwI GGATC 2 cut(s) 281, 544
Aor13HI TCCGGA 1 cut(s) 376
AoxI GGCC 2 cut(s) 129, 431
ApeKI GCWGC 2 cut(s) 13, 169
ApoI RAATTY 1 cut(s) 510
AsiGI ACCGGT 1 cut(s) 517
AspS9I GGNCC 1 cut(s) 431
AsuHPI GGTGA 6 cut(s) 32, 332, 433, 473, 531, 532
BalI TGGCCA 1 cut(s) 131
BbvI GCAGC 2 cut(s) 25, 181
BccI CCATC 1 cut(s) 311
BcoDI GTCTC 2 cut(s) 340, 602
BfaI CTAG 1 cut(s) 455
BglII AGATCT 1 cut(s) 178
BisI GCNGC 2 cut(s) 14, 170
BlsI GCNGC 2 cut(s) 15, 171
BmgT120I GGNCC 1 cut(s) 431
BpuEI CTTGAG 1 cut(s) 518
BsaHI GRCGYC 1 cut(s) 478
BsaI GGTCTC 1 cut(s) 602
BsaWI WCCGGW 3 cut(s) 376, 391, 517
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse118I RCCGGY 2 cut(s) 352, 517
Bse1I ACTGG 1 cut(s) 49
Bse3DI GCAATG 1 cut(s) 144
BseAI TCCGGA 1 cut(s) 376
BseGI GGATG 1 cut(s) 322
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMI GCAATG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 49
BseXI GCAGC 2 cut(s) 25, 181
BshFI GGCC 2 cut(s) 131, 433
BshTI ACCGGT 1 cut(s) 517
BsiSI CCGG 4 cut(s) 353, 377, 392, 518
BslI CCNNNNNNNGG 1 cut(s) 398
BsmAI GTCTC 2 cut(s) 340, 602
BsnI GGCC 2 cut(s) 131, 433
Bso31I GGTCTC 1 cut(s) 602
Bsp13I TCCGGA 1 cut(s) 376
Bsp143I GATC 3 cut(s) 178, 286, 536
BspACI CCGC 3 cut(s) 350, 416, 485
BspANI GGCC 2 cut(s) 131, 433
BspEI TCCGGA 1 cut(s) 376
BspPI GGATC 2 cut(s) 281, 544
BspQI GCTCTTC 2 cut(s) 66, 273
BspTNI GGTCTC 1 cut(s) 602
BsrDI GCAATG 1 cut(s) 144
BsrFI RCCGGY 2 cut(s) 352, 517
BsrI ACTGG 1 cut(s) 49
BssAI RCCGGY 2 cut(s) 352, 517
BssMI GATC 3 cut(s) 178, 286, 536
BssNI GRCGYC 1 cut(s) 478
Bst4CI ACNGT 1 cut(s) 593
Bst6I CTCTTC 4 cut(s) 66, 93, 273, 575
BstACI GRCGYC 1 cut(s) 478
BstC8I GCNNGC 1 cut(s) 133
BstDEI CTNAG 2 cut(s) 29, 77
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 3 cut(s) 181, 289, 539
BstMAI GTCTC 2 cut(s) 340, 602
BstMBI GATC 3 cut(s) 178, 286, 536
BstMWI GCNNNNNNNGC 1 cut(s) 484
BstV1I GCAGC 2 cut(s) 25, 181
BstX2I RGATCY 2 cut(s) 178, 286
BstYI RGATCY 2 cut(s) 178, 286
BsuRI GGCC 2 cut(s) 131, 433
BtsCI GGATG 1 cut(s) 322
BtsIMutI CAGTG 2 cut(s) 56, 589
Cac8I GCNNGC 1 cut(s) 133
Cfr10I RCCGGY 2 cut(s) 352, 517
Cfr13I GGNCC 1 cut(s) 431
CseI GACGC 1 cut(s) 467
Csp6I GTAC 1 cut(s) 616
CspAI ACCGGT 1 cut(s) 517
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
CviJI RGCY 9 cut(s) 76, 131, 172, 194, 406, 433, 458, 466, 625
CviKI_1 RGCY 9 cut(s) 76, 131, 172, 194, 406, 433, 458, 466, 625
CviQI GTAC 1 cut(s) 616
DdeI CTNAG 2 cut(s) 29, 77
DpnI GATC 3 cut(s) 180, 288, 538
DpnII GATC 3 cut(s) 178, 286, 536
DraI TTTAAA 1 cut(s) 411
EaeI YGGCCR 1 cut(s) 129
Eam1104I CTCTTC 4 cut(s) 66, 93, 273, 575
EarI CTCTTC 4 cut(s) 66, 93, 273, 575
Eco31I GGTCTC 1 cut(s) 602
Eco57I CTGAAG 2 cut(s) 425, 552
EcoO109I RGGNCCY 1 cut(s) 431
FaiI YATR 1 cut(s) 59
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FauI CCCGC 1 cut(s) 492
Fnu4HI GCNGC 2 cut(s) 14, 170
FokI GGATG 1 cut(s) 329
Fsp4HI GCNGC 2 cut(s) 14, 170
FspBI CTAG 1 cut(s) 455
GluI GCNGC 2 cut(s) 14, 170
HaeIII GGCC 2 cut(s) 131, 433
HapII CCGG 4 cut(s) 353, 377, 392, 518
HgaI GACGC 1 cut(s) 467
Hin1I GRCGYC 1 cut(s) 478
HindIII AAGCTT 1 cut(s) 404
HinfI GANTC 5 cut(s) 37, 235, 445, 500, 596
HpaII CCGG 4 cut(s) 353, 377, 392, 518
HphI GGTGA 6 cut(s) 32, 332, 433, 473, 531, 532
Hpy166II GTNNAC 1 cut(s) 589
Hpy188I TCNGA 2 cut(s) 316, 444
Hpy188III TCNNGA 2 cut(s) 242, 377
Hpy8I GTNNAC 1 cut(s) 589
HpyAV CCTTC 3 cut(s) 269, 418, 527
HpyCH4III ACNGT 1 cut(s) 593
HpyCH4V TGCA 1 cut(s) 169
HpyF10VI GCNNNNNNNGC 1 cut(s) 484
HpyF3I CTNAG 2 cut(s) 29, 77
Hsp92I GRCGYC 1 cut(s) 478
Kpn2I TCCGGA 1 cut(s) 376
Kzo9I GATC 3 cut(s) 178, 286, 536
LguI GCTCTTC 2 cut(s) 66, 273
Lsp1109I GCAGC 2 cut(s) 25, 181
MaeI CTAG 1 cut(s) 455
MaeIII GTNAC 3 cut(s) 38, 479, 546
MalI GATC 3 cut(s) 180, 288, 538
MboI GATC 3 cut(s) 178, 286, 536
MboII GAAGA 9 cut(s) 80, 83, 83, 149, 173, 230, 290, 335, 592
MflI RGATCY 2 cut(s) 178, 286
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 3 cut(s) 19, 360, 510
MluNI TGGCCA 1 cut(s) 131
MlyI GAGTC 3 cut(s) 46, 439, 509
MmeI TCCRAC 1 cut(s) 14
MnlI CCTC 2 cut(s) 266, 576
Mox20I TGGCCA 1 cut(s) 131
MroI TCCGGA 1 cut(s) 376
MscI TGGCCA 1 cut(s) 131
MseI TTAA 1 cut(s) 410
MslI CAYNNNNRTG 1 cut(s) 101
Msp20I TGGCCA 1 cut(s) 131
MspI CCGG 4 cut(s) 353, 377, 392, 518
MwoI GCNNNNNNNGC 1 cut(s) 484
NdeII GATC 3 cut(s) 178, 286, 536
NmuCI GTSAC 3 cut(s) 38, 479, 546
PciSI GCTCTTC 2 cut(s) 66, 273
PfeI GAWTC 2 cut(s) 235, 596
PinAI ACCGGT 1 cut(s) 517
PkrI GCNGC 2 cut(s) 15, 171
PleI GAGTC 3 cut(s) 45, 439, 508
PpsI GAGTC 3 cut(s) 45, 439, 508
PspPI GGNCC 1 cut(s) 431
PsuI RGATCY 2 cut(s) 178, 286
RsaI GTAC 1 cut(s) 617
RsaNI GTAC 1 cut(s) 616
RseI CAYNNNNRTG 1 cut(s) 101
SapI GCTCTTC 2 cut(s) 66, 273
SaqAI TTAA 1 cut(s) 410
SatI GCNGC 2 cut(s) 14, 170
Sau3AI GATC 3 cut(s) 178, 286, 536
Sau96I GGNCC 1 cut(s) 431
SchI GAGTC 3 cut(s) 46, 439, 509
SetI ASST 6 cut(s) 78, 174, 196, 408, 460, 468
SgrAI CRCCGGYG 2 cut(s) 352, 517
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 1 cut(s) 497
SmoI CTYRAG 1 cut(s) 497
Sse9I AATT 3 cut(s) 19, 360, 510
SsiI CCGC 3 cut(s) 350, 416, 485
SspMI CTAG 1 cut(s) 455
TaaI ACNGT 1 cut(s) 593
TasI AATT 3 cut(s) 19, 360, 510
TfiI GAWTC 2 cut(s) 235, 596
Tru1I TTAA 1 cut(s) 410
Tru9I TTAA 1 cut(s) 410
TscAI CASTG 2 cut(s) 56, 596
TseFI GTSAC 3 cut(s) 38, 479, 546
TseI GCWGC 2 cut(s) 13, 169
Tsp45I GTSAC 3 cut(s) 38, 479, 546
TspDTI ATGAA 1 cut(s) 225
TspGWI ACGGA 1 cut(s) 287
TspRI CASTG 2 cut(s) 56, 596
XapI RAATTY 1 cut(s) 510
XcmI CCANNNNNNNNNTGG 1 cut(s) 50
XspI CTAG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.