Rorug05G0304500

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0011938
Physical Location & Seq
Reverse (-)
35453455 .. 35456665
3211 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0304500.1

Sequence Viewer

Length: 2037 bp
ATGAAGGCAGCTCTTGCTTCAGTGGTTGGGAGCAAAACCTTCGTGTTCGAGGTCGGGAGTTCGAACCTTACCTCCTACAAATATTTTTGGATCTCGTATATGCTTGATATACGGACGCATATACGAAACCAACTACATGGAAGCATCCCAACTGGTTTAGGAAGTCTTGTGAATTTGCAATCACTCGCTTTGGGGGATAACTCCTTCTCAGGTAGCATCCCCGCTGACATTGGGAAGCGTTCAACGCTTGTGGAATTGTATCTTGAGGACAACCAATTATCAGGAAGCATTCCATCTTCTCTTGGAAATTTAACCATGTTAACCCGTCTATACTTGCTAGCAAATAATCTTAGCGGCAGCATCCCTTCGAGTCTAGGGAAATGCCACGGGTTGTTGGAATTGGATCTTTCTCAAAATATCCTTAATGGTACAATACCCCATCAACTACTTAGTGGCCTCCTCTCCTTATCAATTATTCTCAACTTGTCCAGAAACCACTTTGTTGGTTCCCTTCCTGTGCAGATCGGCAAGTTGAGGAATCTAGGTGAACTTGATGTTTCCGAGAACATGTTATCGGGAGAGCTTCCTAATAGCCTCGGTGATTGTCAGAGTTTAGAAGTCCTACACTTGCAGGGAAATTACTTCATGGGGCTCATTCCATCATCTATGGACTTGAGAGGCCTTCGAGATTTAGACCTTTCTCGAAACAATTTGTCCGGACATATTCCACCGTTCTTTAAGGGCTTTGGAAACTTGGAGAATCTGAACCTATCCTTCAATCACTTATGGGGGGAAGTACCAATTGAAGGTGCTTTTAAGAATGCAAGTGCAACATCAGTTGTTGGAAACACCGCACTCTGCGGAGGTATTGCAGAGCTTCGACTTCCTGTGTGCAAATCTGAAGTGTCTAAAGCAAGAGGTTTGTCTCGTACAATAAAAATAGTTATGGATTTAGTATCCGGGTTTACTCTGTTGGTAATTGCTATGGTGCTATCCTTTTTACTTCATCGTAAGAAAAGGAAAGCAATTAAGCTGAGCACTTTGGGGAACTCTTTTTTGCAAGTCTCGTATGCTATGCTCCTAAAAGCAACTGACGGGTTTTCTTCCACTAATTTGATTGGTGAGGGTGGTTTTGGTTCTGTGTACAAAGGAATTCTCGATGGTGATAGAGTTGTCGCTGTAAAGGTGCTTAACATGGTACAAAGGGGAGCTTCAAAGAGTTTCATAGCTGAATGTGAAGCACTGAGAAATATCAGGCATCGAAACCTGGTCAAGATTGTAACTGCATGTTCAAGTGTTGATTTTCGTGGAAATGATTTCAAGGCTCTAGTTTATGAATTCATGGAAAATGGGAGCTTAGAAGAGTGGTTGCATCCATCCACTGGAATTGAAACGGTAATAGATGCACCCAAAACTTTAAATCTTGTCCAGAGGCTTGATATCGCCATTGATGTTGCTTCTACATTGGATTATCTTCACAATCATTGTGAAACACCAATAGTTCATTGTGATCTCAAACCAAGTAACGTCCTTTTGGATAAAGAGCTGACTGCACATGTTTCTGACTTTGGACTTGCAAGGTTTCTCTCAAAATTAACTGATAACGTTTCTGGAAATCAATCAAGCTCCATTGGAATAAGAGGATCGGTTGGTTATAATGCTCCAGAGTATGGTATGGGAAGTGAGGTGTCAACATATGGGGATGTGTACAGCTTTGGCATTCTCTTGTTAGAAATGTTTACTGGGAAGAGACCTACTGATCCTATGTTCAGTGACAGCTTGAATCTTCATAACTTTGTGAAGATGGCTCTACCTGAACATGTTGAGGAGATTACAGATTCACAACTTGAAAGAGGCATCACCACTTCTGATGAAGCTCGCAATCAACCCATCACAAGACCACAAAAAATTGAAGAGTGCTTAAAGTTGATATTTGGAATTGGAATTGCGAGTTCTGCTGAATCCCCAACAAACCGAAAGGATATAAGTGATGTTGTATCTGAATTGCACACCGTCAGGAACAATCTTCTTGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

678

Amino Acids

73.75

Weight (kDa)

6.24

Isoelectric Point (pI)

32.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 43 - 162 3.1e-06 Leucine-rich repeat region
LRR_14 PF23598 127 - 256 1.9e-06 Leucine-rich repeat region
Pkinase PF00069 369 - 617 1.1e-37 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 371 - 593 8.8e-39 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28140 AT3G44940 AT5G22930
fragaria_vesca FvH4_3g30750 FvH4_3g30750
malus_domestica MD03G1126900.v1.1 MD11G1147500.v1.1
prunus_persica Prupe.6G112200_v2.0.a1
pyrus_communis pycom11g12080
rosa_chinensis RchiOBHm_Chr5g0056941
rosa_laevigata RLG00000035141
rosa_multiflora Rmu_sc0002035.1_g000007
rosa_roxburghii Rroxscaffold_1G00023250
rosa_rugosa Rorug05G0304500
rosa_samantha Rh5AG373900 Rh5BG384900 Rh5CG408200 Rh5DG398300
rosa_wichuraiana Rw5G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1656
AccB7I CCANNNNNTGG 2 cut(s) 1382, 1670
AccIII TCCGGA 1 cut(s) 716
AciI CCGC 4 cut(s) 222, 354, 852, 861
AclI AACGTT 1 cut(s) 1605
AclWI GGATC 4 cut(s) 98, 411, 1651, 1754
AcsI RAATTY 4 cut(s) 172, 307, 1152, 1337
AcuI CTGAAG 1 cut(s) 921
AfaI GTAC 6 cut(s) 430, 798, 931, 1145, 1200, 1709
AfiI CCNNNNNNNGG 3 cut(s) 806, 1382, 1670
AflIII ACRYGT 3 cut(s) 567, 1555, 1819
AjnI CCWGG 1 cut(s) 1266
AloI GAACNNNNNNTCC 2 cut(s) 56, 88
Alw21I GWGCWC 1 cut(s) 1040
Alw26I GTCTC 3 cut(s) 930, 1069, 1744
AlwI GGATC 4 cut(s) 98, 411, 1651, 1754
Aor13HI TCCGGA 1 cut(s) 716
AoxI GGCC 2 cut(s) 454, 679
ApeKI GCWGC 2 cut(s) 8, 357
ApoI RAATTY 4 cut(s) 172, 307, 1152, 1337
AsuC2I CCSGG 1 cut(s) 961
AsuHPI GGTGA 5 cut(s) 557, 611, 1133, 1175, 1852
AsuII TTCGAA 1 cut(s) 62
AsuNHI GCTAGC 1 cut(s) 337
BanII GRGCYC 1 cut(s) 654
Bbv12I GWGCWC 1 cut(s) 1040
BbvI GCAGC 2 cut(s) 20, 369
BccI CCATC 7 cut(s) 301, 447, 667, 1154, 1384, 1798, 1898
BcgI CGANNNNNNTGC 2 cut(s) 22, 56
BciT130I CCWGG 1 cut(s) 1268
BciVI GTATCC 1 cut(s) 967
BcnI CCSGG 1 cut(s) 961
BcoDI GTCTC 3 cut(s) 930, 1069, 1744
BfaI CTAG 5 cut(s) 338, 374, 542, 1328, 2035
BfuI GTATCC 1 cut(s) 967
BisI GCNGC 3 cut(s) 9, 355, 358
BlpI GCTNAGC 1 cut(s) 1034
BlsI GCNGC 3 cut(s) 10, 356, 359
Bme1390I CCNGG 2 cut(s) 961, 1268
BmiI GGNNCC 1 cut(s) 508
BmrFI CCNGG 2 cut(s) 961, 1268
BmrI ACTGGG 1 cut(s) 1752
BmsI GCATC 7 cut(s) 153, 225, 369, 1267, 1381, 1393, 1866
BmtI GCTAGC 1 cut(s) 341
BmuI ACTGGG 1 cut(s) 1752
BpmI CTGGAG 1 cut(s) 1647
Bpu1102I GCTNAGC 1 cut(s) 1034
Bpu14I TTCGAA 1 cut(s) 62
BpuEI CTTGAG 2 cut(s) 284, 694
BpuMI CCSGG 1 cut(s) 961
BsaI GGTCTC 1 cut(s) 1744
BsaJI CCNNGG 2 cut(s) 385, 595
BsaWI WCCGGW 1 cut(s) 716
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 3 cut(s) 806, 1382, 1670
Bse1I ACTGG 3 cut(s) 157, 1387, 1747
BseAI TCCGGA 1 cut(s) 716
BseBI CCWGG 1 cut(s) 1268
BseDI CCNNGG 2 cut(s) 385, 595
BseGI GGATG 6 cut(s) 144, 216, 360, 1372, 1376, 1708
BseLI CCNNNNNNNGG 3 cut(s) 806, 1382, 1670
BseMII CTCAG 3 cut(s) 222, 1025, 1235
BseNI ACTGG 3 cut(s) 157, 1387, 1747
BseRI GAGGAG 2 cut(s) 449, 1841
BseXI GCAGC 2 cut(s) 20, 369
BsgI GTGCAG 2 cut(s) 539, 1536
BshFI GGCC 2 cut(s) 456, 681
BsiHKAI GWGCWC 1 cut(s) 1040
BsiSI CCGG 2 cut(s) 717, 960
BslI CCNNNNNNNGG 3 cut(s) 806, 1382, 1670
BsmAI GTCTC 3 cut(s) 930, 1069, 1744
BsmI GAATGC 3 cut(s) 288, 826, 1719
BsnI GGCC 2 cut(s) 456, 681
Bso31I GGTCTC 1 cut(s) 1744
Bsp119I TTCGAA 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 654, 1040
Bsp13I TCCGGA 1 cut(s) 716
Bsp1407I TGTACA 2 cut(s) 1143, 1707
Bsp143I GATC 6 cut(s) 90, 403, 522, 1510, 1643, 1759
Bsp1720I GCTNAGC 1 cut(s) 1034
BspACI CCGC 4 cut(s) 222, 354, 852, 861
BspANI GGCC 2 cut(s) 456, 681
BspCNI CTCAG 3 cut(s) 221, 1026, 1236
BspEI TCCGGA 1 cut(s) 716
BspLI GGNNCC 1 cut(s) 508
BspOI GCTAGC 1 cut(s) 341
BspPI GGATC 4 cut(s) 98, 411, 1651, 1754
BspT104I TTCGAA 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 1744
BsrGI TGTACA 2 cut(s) 1143, 1707
BsrI ACTGG 3 cut(s) 157, 1387, 1747
BssECI CCNNGG 2 cut(s) 385, 595
BssMI GATC 6 cut(s) 90, 403, 522, 1510, 1643, 1759
Bst2UI CCWGG 1 cut(s) 1268
Bst4CI ACNGT 3 cut(s) 732, 1396, 2014
Bst6I CTCTTC 3 cut(s) 1356, 1742, 1908
BstAPI GCANNNNNTGC 1 cut(s) 14
BstAUI TGTACA 2 cut(s) 1143, 1707
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 2 cut(s) 339, 1879
BstDEI CTNAG 6 cut(s) 208, 350, 449, 1034, 1244, 1357
BstDSI CCRYGG 1 cut(s) 385
BstF5I GGATG 6 cut(s) 144, 216, 360, 1372, 1376, 1708
BstKTI GATC 6 cut(s) 93, 406, 525, 1513, 1646, 1762
BstMAI GTCTC 3 cut(s) 930, 1069, 1744
BstMBI GATC 6 cut(s) 90, 403, 522, 1510, 1643, 1759
BstMWI GCNNNNNNNGC 3 cut(s) 14, 244, 1955
BstNI CCWGG 1 cut(s) 1268
BstNSI RCATGY 4 cut(s) 571, 1290, 1559, 1823
BstSCI CCNGG 2 cut(s) 959, 1266
BstV1I GCAGC 2 cut(s) 20, 369
BstX2I RGATCY 2 cut(s) 90, 403
BstXI CCANNNNNNTGG 2 cut(s) 137, 503
BstYI RGATCY 2 cut(s) 90, 403
BsuI GTATCC 1 cut(s) 967
BsuRI GGCC 2 cut(s) 456, 681
BtgI CCRYGG 1 cut(s) 385
BtsCI GGATG 6 cut(s) 144, 216, 360, 1372, 1376, 1708
BtsIMutI CAGTG 4 cut(s) 27, 1241, 1380, 1777
Cac8I GCNNGC 2 cut(s) 339, 1879
CseI GACGC 1 cut(s) 124
CsiI ACCWGGT 1 cut(s) 1266
Csp6I GTAC 6 cut(s) 429, 797, 930, 1144, 1199, 1708
CspCI CAANNNNNGTGG 4 cut(s) 231, 266, 1369, 1404
CviAII CATG 9 cut(s) 137, 316, 568, 646, 1195, 1287, 1342, 1556, 1820
CviQI GTAC 6 cut(s) 429, 797, 930, 1144, 1199, 1708
DdeI CTNAG 6 cut(s) 208, 350, 449, 1034, 1244, 1357
DpnI GATC 6 cut(s) 92, 405, 524, 1512, 1645, 1761
DpnII GATC 6 cut(s) 90, 403, 522, 1510, 1643, 1759
DraI TTTAAA 1 cut(s) 1419
Eam1104I CTCTTC 3 cut(s) 1356, 1742, 1908
EarI CTCTTC 3 cut(s) 1356, 1742, 1908
Eco147I AGGCCT 1 cut(s) 681
Eco24I GRGCYC 1 cut(s) 654
Eco31I GGTCTC 1 cut(s) 1744
Eco32I GATATC 1 cut(s) 1441
Eco57I CTGAAG 1 cut(s) 921
EcoRI GAATTC 2 cut(s) 1152, 1337
EcoRII CCWGG 1 cut(s) 1266
EcoRV GATATC 1 cut(s) 1441
EcoT38I GRGCYC 1 cut(s) 654
FaeI CATG 9 cut(s) 140, 319, 571, 649, 1198, 1290, 1345, 1559, 1823
FalI AAGNNNNNCTT 2 cut(s) 1195, 1227
FatI CATG 9 cut(s) 136, 315, 567, 645, 1194, 1286, 1341, 1555, 1819
FauI CCCGC 1 cut(s) 229
FauNDI CATATG 1 cut(s) 1696
Fnu4HI GCNGC 3 cut(s) 9, 355, 358
FokI GGATG 6 cut(s) 131, 203, 347, 1359, 1363, 1715
FriOI GRGCYC 1 cut(s) 654
Fsp4HI GCNGC 3 cut(s) 9, 355, 358
FspBI CTAG 5 cut(s) 338, 374, 542, 1328, 2035
GluI GCNGC 3 cut(s) 9, 355, 358
GsuI CTGGAG 1 cut(s) 1647
HaeIII GGCC 2 cut(s) 456, 681
HapII CCGG 2 cut(s) 717, 960
HgaI GACGC 1 cut(s) 124
Hin1II CATG 9 cut(s) 140, 319, 571, 649, 1198, 1290, 1345, 1559, 1823
HincII GTYRAC 2 cut(s) 321, 1692
HindII GTYRAC 2 cut(s) 321, 1692
HinfI GANTC 6 cut(s) 370, 538, 760, 1783, 1838, 1961
HpaI GTTAAC 1 cut(s) 321
HpaII CCGG 2 cut(s) 717, 960
HphI GGTGA 5 cut(s) 557, 611, 1133, 1175, 1852
Hpy166II GTNNAC 7 cut(s) 321, 548, 966, 1144, 1692, 1708, 1740
Hpy188I TCNGA 7 cut(s) 562, 609, 765, 901, 1564, 1870, 2002
Hpy8I GTNNAC 7 cut(s) 321, 548, 966, 1144, 1692, 1708, 1740
HpyAV CCTTC 7 cut(s) 49, 214, 375, 521, 692, 784, 800
HpyCH4III ACNGT 3 cut(s) 732, 1396, 2014
HpyCH4IV ACGT 2 cut(s) 1527, 1605
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 244, 1955
HpyF3I CTNAG 6 cut(s) 208, 350, 449, 1034, 1244, 1357
HpySE526I ACGT 2 cut(s) 1527, 1605
Hsp92II CATG 9 cut(s) 140, 319, 571, 649, 1198, 1290, 1345, 1559, 1823
Kpn2I TCCGGA 1 cut(s) 716
KspAI GTTAAC 1 cut(s) 321
Kzo9I GATC 6 cut(s) 90, 403, 522, 1510, 1643, 1759
LmnI GCTCC 6 cut(s) 30, 1083, 1208, 1353, 1631, 1666
Lsp1109I GCAGC 2 cut(s) 20, 369
LweI GCATC 7 cut(s) 153, 225, 369, 1267, 1381, 1393, 1866
MabI ACCWGGT 1 cut(s) 1266
MaeI CTAG 5 cut(s) 338, 374, 542, 1328, 2035
MaeII ACGT 2 cut(s) 1527, 1605
MaeIII GTNAC 3 cut(s) 1279, 1523, 1772
MalI GATC 6 cut(s) 92, 405, 524, 1512, 1645, 1761
MboI GATC 6 cut(s) 90, 403, 522, 1510, 1643, 1759
MboII GAAGA 9 cut(s) 288, 1095, 1373, 1466, 1759, 1778, 1813, 1925, 2018
MfeI CAATTG 1 cut(s) 801
MflI RGATCY 2 cut(s) 90, 403
MhlI GDGCHC 2 cut(s) 654, 1040
MlyI GAGTC 1 cut(s) 379
MmeI TCCRAC 2 cut(s) 375, 823
MroI TCCGGA 1 cut(s) 716
MspA1I CMGCKG 1 cut(s) 224
MspI CCGG 2 cut(s) 717, 960
MspR9I CCNGG 2 cut(s) 961, 1268
MunI CAATTG 1 cut(s) 801
Mva1269I GAATGC 3 cut(s) 288, 826, 1719
MvaI CCWGG 1 cut(s) 1268
MwoI GCNNNNNNNGC 3 cut(s) 14, 244, 1955
NciI CCSGG 1 cut(s) 961
NdeI CATATG 1 cut(s) 1696
NdeII GATC 6 cut(s) 90, 403, 522, 1510, 1643, 1759
NheI GCTAGC 1 cut(s) 337
NlaIII CATG 9 cut(s) 140, 319, 571, 649, 1198, 1290, 1345, 1559, 1823
NlaIV GGNNCC 1 cut(s) 508
NmuCI GTSAC 1 cut(s) 1772
NspI RCATGY 4 cut(s) 571, 1290, 1559, 1823
NspV TTCGAA 1 cut(s) 62
PceI AGGCCT 1 cut(s) 681
PciI ACATGT 3 cut(s) 567, 1555, 1819
PctI GAATGC 3 cut(s) 288, 826, 1719
PfeI GAWTC 5 cut(s) 538, 760, 1783, 1838, 1961
PflMI CCANNNNNTGG 2 cut(s) 1382, 1670
PkrI GCNGC 3 cut(s) 10, 356, 359
PleI GAGTC 1 cut(s) 378
PpsI GAGTC 1 cut(s) 378
PscI ACATGT 3 cut(s) 567, 1555, 1819
PsiI TTATAA 1 cut(s) 1656
Psp1406I AACGTT 1 cut(s) 1605
Psp6I CCWGG 1 cut(s) 1266
PspGI CCWGG 1 cut(s) 1266
PspN4I GGNNCC 1 cut(s) 508
PsuI RGATCY 2 cut(s) 90, 403
RsaI GTAC 6 cut(s) 430, 798, 931, 1145, 1200, 1709
RsaNI GTAC 6 cut(s) 429, 797, 930, 1144, 1199, 1708
SatI GCNGC 3 cut(s) 9, 355, 358
Sau3AI GATC 6 cut(s) 90, 403, 522, 1510, 1643, 1759
SchI GAGTC 1 cut(s) 379
ScrFI CCNGG 2 cut(s) 961, 1268
SduI GDGCHC 2 cut(s) 654, 1040
SexAI ACCWGGT 1 cut(s) 1266
SfaNI GCATC 7 cut(s) 153, 225, 369, 1267, 1381, 1393, 1866
SfuI TTCGAA 1 cut(s) 62
SmlI CTYRAG 2 cut(s) 263, 673
SmoI CTYRAG 2 cut(s) 263, 673
SseBI AGGCCT 1 cut(s) 681
SsiI CCGC 4 cut(s) 222, 354, 852, 861
SspI AATATT 1 cut(s) 83
SspMI CTAG 5 cut(s) 338, 374, 542, 1328, 2035
StuI AGGCCT 1 cut(s) 681
StyD4I CCNGG 2 cut(s) 959, 1266
TaaI ACNGT 3 cut(s) 732, 1396, 2014
TaiI ACGT 2 cut(s) 1530, 1608
TaqI TCGA 8 cut(s) 48, 62, 368, 685, 703, 880, 1158, 1261
TatI WGTACW 2 cut(s) 1143, 1707
TauI GCSGC 1 cut(s) 357
TfiI GAWTC 5 cut(s) 538, 760, 1783, 1838, 1961
TscAI CASTG 4 cut(s) 27, 1248, 1387, 1777
TseFI GTSAC 1 cut(s) 1772
TseI GCWGC 2 cut(s) 8, 357
Tsp45I GTSAC 1 cut(s) 1772
TspDTI ATGAA 9 cut(s) 17, 634, 995, 1213, 1330, 1350, 1493, 1778, 1887
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 4 cut(s) 27, 1248, 1387, 1777
Van91I CCANNNNNTGG 2 cut(s) 1382, 1670
XapI RAATTY 4 cut(s) 172, 307, 1152, 1337
XceI RCATGY 4 cut(s) 571, 1290, 1559, 1823
XspI CTAG 5 cut(s) 338, 374, 542, 1328, 2035
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.