AT5G22930

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0011938
Physical Location & Seq
Reverse (-)
7667630 .. 7669410
1781 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G22930.1

Sequence Viewer

Length: 717 bp
ATGGATAACCAAAGCAATGCTCTTCTTGGTTGGCCTTACTACTCTCACGCAAAGACAACAGAAGAAATAAGACAGTCTCTACTGTACACAACACTAGAGCTGGACCAAACAAAGATGTTTGCTTATGAAGAAATAAGGAAAAGAGACGAGCAATTGATCCATCTCAAAGACATCTTAACCAAAACCATCAAAGAAAGAGACGAAGCTCTCGAGAAATGTCAGCGTCTCATGTTCGATAGCCACTCGCTTCAGCAGCAAAAGCATATGACTCCTCCTTTATCTGGAGCTTCAAGCATTGAAGACGAACAAGTGCAGCCTCAACAACTAAGATCCAACAAGAGCTTCTCATCTTCTGATTGCGAGGAGAGCATTATGTCACCAACTGATCATATCATGAATCCACCACCATGTCAGCTTGAAGAAGTCTCAGGAACTGAGATTATCATGGATCCATTGTTGCAAGACAAGCCACTGCCTGAGAAGGGTAAGCTTTTACAAGCTGTTATTAAGGCAGGGCCTTTACTTCAGACACTGCTCTTAGCTGGTCCATTACCTCAATGGCGCCATCCGCCACCGCCTCTCAAGAGCTTCGAGATCCCTCCGGTCACAGTCCAATGCCCAATTGTCAACAATGGATGTGGGAAGTTCAACAGGAAAAGAGTATTCTCAGATGGATCCTATTCAGAAGCTAAGTATCAGAAAGTTCTTCTCCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

238

Amino Acids

27.11

Weight (kDa)

5.9

Isoelectric Point (pI)

64.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 18 - 235 4.3e-92 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28140 AT3G44940 AT5G22930
fragaria_vesca FvH4_3g30750 FvH4_3g30750
malus_domestica MD03G1126900.v1.1 MD11G1147500.v1.1
prunus_persica Prupe.6G112200_v2.0.a1
pyrus_communis pycom11g12080
rosa_chinensis RchiOBHm_Chr5g0056941
rosa_laevigata RLG00000035141
rosa_multiflora Rmu_sc0002035.1_g000007
rosa_roxburghii Rroxscaffold_1G00023250
rosa_rugosa Rorug05G0304500
rosa_samantha Rh5AG373900 Rh5BG384900 Rh5CG408200 Rh5DG398300
rosa_wichuraiana Rw5G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 561
AciI CCGC 2 cut(s) 569, 575
AclWI GGATC 7 cut(s) 151, 324, 443, 456, 589, 669, 682
AcuI CTGAAG 2 cut(s) 233, 509
AcyI GRCGYC 1 cut(s) 562
AfaI GTAC 1 cut(s) 86
AfiI CCNNNNNNNGG 2 cut(s) 281, 482
AgsI TTSAA 4 cut(s) 291, 299, 419, 649
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
Alw26I GTCTC 5 cut(s) 81, 138, 192, 230, 430
AlwI GGATC 7 cut(s) 151, 324, 443, 456, 589, 669, 682
AlwNI CAGNNNCTG 2 cut(s) 434, 532
Ama87I CYCGRG 1 cut(s) 209
AoxI GGCC 2 cut(s) 32, 515
ApeKI GCWGC 2 cut(s) 253, 313
AspLEI GCGC 1 cut(s) 564
AspS9I GGNCC 3 cut(s) 103, 515, 545
AsuHPI GGTGA 1 cut(s) 369
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 2 cut(s) 103, 545
BamHI GGATCC 2 cut(s) 448, 674
BanI GGYRCC 1 cut(s) 561
BbsI GAAGAC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 265, 325
BccI CCATC 4 cut(s) 168, 194, 573, 665
BclI TGATCA 1 cut(s) 385
BcoDI GTCTC 5 cut(s) 81, 138, 192, 230, 430
BfaI CTAG 1 cut(s) 95
BfoI RGCGCY 1 cut(s) 565
BisI GCNGC 2 cut(s) 254, 314
BlsI GCNGC 2 cut(s) 255, 315
Bme18I GGWCC 2 cut(s) 103, 545
BmeT110I CYCGRG 1 cut(s) 209
BmgT120I GGNCC 3 cut(s) 103, 515, 545
BmiI GGNNCC 3 cut(s) 450, 563, 676
BpiI GAAGAC 1 cut(s) 306
BpmI CTGGAG 1 cut(s) 303
BpuEI CTTGAG 1 cut(s) 566
BsaHI GRCGYC 1 cut(s) 562
BsaWI WCCGGW 1 cut(s) 601
Bsc4I CCNNNNNNNGG 2 cut(s) 281, 482
Bse3DI GCAATG 1 cut(s) 22
BseGI GGATG 2 cut(s) 565, 641
BseLI CCNNNNNNNGG 2 cut(s) 281, 482
BseMI GCAATG 1 cut(s) 22
BseMII CTCAG 4 cut(s) 426, 441, 468, 681
BseRI GAGGAG 2 cut(s) 261, 377
BseXI GCAGC 2 cut(s) 265, 325
BsgI GTGCAG 1 cut(s) 332
BshFI GGCC 2 cut(s) 34, 517
BshNI GGYRCC 1 cut(s) 561
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 1 cut(s) 602
BslI CCNNNNNNNGG 2 cut(s) 281, 482
BsmAI GTCTC 5 cut(s) 81, 138, 192, 230, 430
BsmBI CGTCTC 3 cut(s) 138, 192, 230
BsnI GGCC 2 cut(s) 34, 517
BsoBI CYCGRG 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 84
Bsp143I GATC 6 cut(s) 156, 329, 385, 448, 594, 674
BspACI CCGC 2 cut(s) 569, 575
BspANI GGCC 2 cut(s) 34, 517
BspCNI CTCAG 4 cut(s) 427, 440, 469, 680
BspHI TCATGA 1 cut(s) 393
BspLI GGNNCC 3 cut(s) 450, 563, 676
BspPI GGATC 7 cut(s) 151, 324, 443, 456, 589, 669, 682
BspQI GCTCTTC 1 cut(s) 27
BspT107I GGYRCC 1 cut(s) 561
BsrDI GCAATG 1 cut(s) 22
BsrGI TGTACA 1 cut(s) 84
BssMI GATC 6 cut(s) 156, 329, 385, 448, 594, 674
BssNI GRCGYC 1 cut(s) 562
Bst4CI ACNGT 3 cut(s) 75, 84, 610
Bst6I CTCTTC 1 cut(s) 27
BstACI GRCGYC 1 cut(s) 562
BstAUI TGTACA 1 cut(s) 84
BstDEI CTNAG 7 cut(s) 326, 427, 435, 477, 538, 667, 690
BstF5I GGATG 2 cut(s) 565, 641
BstH2I RGCGCY 1 cut(s) 565
BstHHI GCGC 1 cut(s) 564
BstKTI GATC 6 cut(s) 159, 332, 388, 451, 597, 677
BstMAI GTCTC 5 cut(s) 81, 138, 192, 230, 430
BstMBI GATC 6 cut(s) 156, 329, 385, 448, 594, 674
BstMWI GCNNNNNNNGC 5 cut(s) 253, 259, 366, 466, 568
BstV1I GCAGC 2 cut(s) 265, 325
BstV2I GAAGAC 1 cut(s) 306
BstX2I RGATCY 4 cut(s) 329, 448, 594, 674
BstYI RGATCY 4 cut(s) 329, 448, 594, 674
BsuRI GGCC 2 cut(s) 34, 517
BtsCI GGATG 2 cut(s) 565, 641
BtsI GCAGTG 2 cut(s) 470, 530
BtsIMutI CAGTG 2 cut(s) 470, 530
CaiI CAGNNNCTG 2 cut(s) 434, 532
CciI TCATGA 1 cut(s) 393
CfoI GCGC 1 cut(s) 564
Cfr13I GGNCC 3 cut(s) 103, 515, 545
CseI GACGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 85
CspCI CAANNNNNGTGG 2 cut(s) 619, 654
CviAII CATG 4 cut(s) 229, 394, 408, 445
CviQI GTAC 1 cut(s) 85
DdeI CTNAG 7 cut(s) 326, 427, 435, 477, 538, 667, 690
DinI GGCGCC 1 cut(s) 563
DpnI GATC 6 cut(s) 158, 331, 387, 450, 596, 676
DpnII GATC 6 cut(s) 156, 329, 385, 448, 594, 674
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
EciI GGCGGA 1 cut(s) 558
Eco47I GGWCC 2 cut(s) 103, 545
Eco57I CTGAAG 2 cut(s) 233, 509
Eco88I CYCGRG 1 cut(s) 209
EcoO109I RGGNCCY 1 cut(s) 515
EgeI GGCGCC 1 cut(s) 563
EheI GGCGCC 1 cut(s) 563
Esp3I CGTCTC 3 cut(s) 138, 192, 230
FaeI CATG 4 cut(s) 232, 397, 411, 448
FaiI YATR 9 cut(s) 126, 230, 264, 266, 374, 390, 395, 409, 446
FatI CATG 4 cut(s) 228, 393, 407, 444
FauNDI CATATG 1 cut(s) 264
FbaI TGATCA 1 cut(s) 385
Fnu4HI GCNGC 2 cut(s) 254, 314
FokI GGATG 2 cut(s) 552, 648
Fsp4HI GCNGC 2 cut(s) 254, 314
FspBI CTAG 1 cut(s) 95
GlaI GCGC 1 cut(s) 563
GluI GCNGC 2 cut(s) 254, 314
GsuI CTGGAG 1 cut(s) 303
HaeII RGCGCY 1 cut(s) 565
HaeIII GGCC 2 cut(s) 34, 517
HapII CCGG 1 cut(s) 602
HgaI GACGC 1 cut(s) 212
HhaI GCGC 1 cut(s) 564
Hin1I GRCGYC 1 cut(s) 562
Hin1II CATG 4 cut(s) 232, 397, 411, 448
Hin6I GCGC 1 cut(s) 562
HinP1I GCGC 1 cut(s) 562
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HindIII AAGCTT 1 cut(s) 488
HinfI GANTC 2 cut(s) 268, 397
HpaII CCGG 1 cut(s) 602
HphI GGTGA 1 cut(s) 369
Hpy166II GTNNAC 2 cut(s) 87, 628
Hpy188I TCNGA 5 cut(s) 355, 528, 670, 685, 699
Hpy188III TCNNGA 7 cut(s) 209, 211, 282, 394, 429, 583, 592
Hpy8I GTNNAC 2 cut(s) 87, 628
HpyAV CCTTC 1 cut(s) 475
HpyCH4III ACNGT 3 cut(s) 75, 84, 610
HpyCH4V TGCA 2 cut(s) 313, 460
HpyF10VI GCNNNNNNNGC 5 cut(s) 253, 259, 366, 466, 568
HpyF3I CTNAG 7 cut(s) 326, 427, 435, 477, 538, 667, 690
Hsp92I GRCGYC 1 cut(s) 562
Hsp92II CATG 4 cut(s) 232, 397, 411, 448
HspAI GCGC 1 cut(s) 562
KasI GGCGCC 1 cut(s) 561
Ksp22I TGATCA 1 cut(s) 385
Kzo9I GATC 6 cut(s) 156, 329, 385, 448, 594, 674
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 284
LpnPI CCDG 8 cut(s) 86, 267, 414, 489, 498, 528, 615, 637
Lsp1109I GCAGC 2 cut(s) 265, 325
MaeI CTAG 1 cut(s) 95
MaeIII GTNAC 2 cut(s) 375, 604
MalI GATC 6 cut(s) 158, 331, 387, 450, 596, 676
MboI GATC 6 cut(s) 156, 329, 385, 448, 594, 674
MboII GAAGA 7 cut(s) 14, 74, 140, 311, 342, 431, 698
MfeI CAATTG 2 cut(s) 152, 621
MflI RGATCY 4 cut(s) 329, 448, 594, 674
MluCI AATT 2 cut(s) 152, 621
Mly113I GGCGCC 1 cut(s) 562
MlyI GAGTC 1 cut(s) 262
MmeI TCCRAC 1 cut(s) 357
MnlI CCTC 6 cut(s) 282, 327, 355, 564, 588, 609
MseI TTAA 2 cut(s) 176, 507
MslI CAYNNNNRTG 1 cut(s) 406
MspI CCGG 1 cut(s) 602
MunI CAATTG 2 cut(s) 152, 621
MwoI GCNNNNNNNGC 5 cut(s) 253, 259, 366, 466, 568
NarI GGCGCC 1 cut(s) 562
NdeI CATATG 1 cut(s) 264
NdeII GATC 6 cut(s) 156, 329, 385, 448, 594, 674
NlaIII CATG 4 cut(s) 232, 397, 411, 448
NlaIV GGNNCC 3 cut(s) 450, 563, 676
NmuCI GTSAC 2 cut(s) 375, 604
PaeR7I CTCGAG 1 cut(s) 209
PagI TCATGA 1 cut(s) 393
PciSI GCTCTTC 1 cut(s) 27
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PfeI GAWTC 1 cut(s) 397
PkrI GCNGC 2 cut(s) 255, 315
PleI GAGTC 1 cut(s) 262
PluTI GGCGCC 1 cut(s) 565
PpsI GAGTC 1 cut(s) 262
PspN4I GGNNCC 3 cut(s) 450, 563, 676
PspPI GGNCC 3 cut(s) 103, 515, 545
PstNI CAGNNNCTG 2 cut(s) 434, 532
PsuI RGATCY 4 cut(s) 329, 448, 594, 674
RsaI GTAC 1 cut(s) 86
RsaNI GTAC 1 cut(s) 85
RseI CAYNNNNRTG 1 cut(s) 406
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 2 cut(s) 176, 507
SatI GCNGC 2 cut(s) 254, 314
Sau3AI GATC 6 cut(s) 156, 329, 385, 448, 594, 674
Sau96I GGNCC 3 cut(s) 103, 515, 545
SchI GAGTC 1 cut(s) 262
SfoI GGCGCC 1 cut(s) 563
Sfr274I CTCGAG 1 cut(s) 209
SinI GGWCC 2 cut(s) 103, 545
SlaI CTCGAG 1 cut(s) 209
SmiMI CAYNNNNRTG 1 cut(s) 406
SmlI CTYRAG 2 cut(s) 209, 581
SmoI CTYRAG 2 cut(s) 209, 581
Sse9I AATT 2 cut(s) 152, 621
SsiI CCGC 2 cut(s) 569, 575
SspDI GGCGCC 1 cut(s) 561
SspMI CTAG 1 cut(s) 95
TaaI ACNGT 3 cut(s) 75, 84, 610
TaqI TCGA 3 cut(s) 210, 234, 591
TasI AATT 2 cut(s) 152, 621
TatI WGTACW 1 cut(s) 84
TfiI GAWTC 1 cut(s) 397
Tru1I TTAA 2 cut(s) 176, 507
Tru9I TTAA 2 cut(s) 176, 507
TscAI CASTG 2 cut(s) 477, 537
TseFI GTSAC 2 cut(s) 375, 604
TseI GCWGC 2 cut(s) 253, 313
Tsp45I GTSAC 2 cut(s) 375, 604
TspDTI ATGAA 2 cut(s) 141, 410
TspRI CASTG 2 cut(s) 477, 537
VpaK11BI GGWCC 2 cut(s) 103, 545
XcmI CCANNNNNNNNNTGG 1 cut(s) 555
XhoI CTCGAG 1 cut(s) 209
XspI CTAG 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.