Rroxscaffold_1G00023250

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0011938
Physical Location & Seq
Forward (+)
28718586 .. 28720175
1590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00023250.1

Sequence Viewer

Length: 777 bp
ATGGACAATCAATGCAGCCCTTTACTTAGCAGCTGGGCATACTACTGCCAAGGAAAGAGCATGGATGATTTGAGGCATTCCCTTTTGTATGCAACTGTGGAGCTTGAACAAACAAGGGCTGCAGCACAAGAGGAGCTGAGGAAGAGAGATGAGCAACTGAGCCACCTCAAAGATCTGCTCAACAATGCTATCAGAGAAAAAGATGAGGCCCAAGAGAAATGCCAAAGGCTCTTCCTTGAGAAACTCCTCCTCCAACAACATCATCAACAACAACACAACCACACAGCTCCTCTGTCTGGAATTTCAAGCATAGAAGATGAGCCCAGGAGAGGAGGGATTGACTCCAACAATGGTGGAGGGTTTTCTTCCTCAGATTGTGAAGAGAGCATTGTGTCTTCACCAGTAATTGACACAATTCCACCAACCCAGTTGCCATTACCATCATCTCTTCAAAACCAAATTGGGGAATTGGTGCCTGACAAGCCATTGCCTGAAAAAGGCAAGCTTTTACAGGCAGTGAGGAATGCTGGTCCATTGCTCCAGACCCTTCTTTTGGCTGGACCACTCCCTCAATGGAGACACCCACCTCCACCTCTTGAGTCCTTTGAGATCCCACCTGTCACTATTACTTCACCACCGATACCACTGCCAAAGCCACTGCTCATCCACCAAGACTCCTTAATTAGTGTTAATGGCTGCAACAGGAAGAGGGTTCTTTGTGAAGGCTCTGATTCCCCTAATTCAGAGACCAAATACCAAAGAGTAGTCCACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

258

Amino Acids

28.74

Weight (kDa)

5.8

Isoelectric Point (pI)

58.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 19 - 255 2e-92 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28140 AT3G44940 AT5G22930
fragaria_vesca FvH4_3g30750 FvH4_3g30750
malus_domestica MD03G1126900.v1.1 MD11G1147500.v1.1
prunus_persica Prupe.6G112200_v2.0.a1
pyrus_communis pycom11g12080
rosa_chinensis RchiOBHm_Chr5g0056941
rosa_laevigata RLG00000035141
rosa_multiflora Rmu_sc0002035.1_g000007
rosa_roxburghii Rroxscaffold_1G00023250
rosa_rugosa Rorug05G0304500
rosa_samantha Rh5AG373900 Rh5BG384900 Rh5CG408200 Rh5DG398300
rosa_wichuraiana Rw5G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 472
AclWI GGATC 1 cut(s) 604
AcsI RAATTY 1 cut(s) 300
AfiI CCNNNNNNNGG 5 cut(s) 296, 329, 463, 497, 553
AgsI TTSAA 3 cut(s) 107, 306, 452
AjnI CCWGG 1 cut(s) 323
AluBI AGCT 5 cut(s) 33, 103, 136, 287, 505
AluI AGCT 5 cut(s) 33, 103, 136, 287, 505
Alw26I GTCTC 2 cut(s) 571, 740
AlwI GGATC 1 cut(s) 604
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 5 cut(s) 15, 30, 119, 122, 696
ApoI RAATTY 1 cut(s) 300
ArsI GACNNNNNNTTYG 2 cut(s) 535, 567
AspS9I GGNCC 3 cut(s) 208, 530, 560
AsuHPI GGTGA 2 cut(s) 390, 624
AvaII GGWCC 2 cut(s) 530, 560
BanI GGYRCC 1 cut(s) 472
BanII GRGCYC 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 387
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 5 cut(s) 27, 42, 106, 134, 683
BccI CCATC 1 cut(s) 448
BcgI CGANNNNNNTGC 2 cut(s) 628, 662
BciT130I CCWGG 1 cut(s) 325
BcoDI GTCTC 2 cut(s) 571, 740
BfmI CTRYAG 1 cut(s) 120
BglII AGATCT 1 cut(s) 172
BisI GCNGC 5 cut(s) 16, 31, 120, 123, 697
BlsI GCNGC 5 cut(s) 17, 32, 121, 124, 698
Bme1390I CCNGG 1 cut(s) 325
Bme18I GGWCC 2 cut(s) 530, 560
BmgT120I GGNCC 3 cut(s) 208, 530, 560
BmiI GGNNCC 1 cut(s) 474
BmrFI CCNGG 1 cut(s) 325
BmrI ACTGGG 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 421
BpiI GAAGAC 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 524
Bpu10I CCTNAGC 1 cut(s) 137
BpuEI CTTGAG 2 cut(s) 257, 617
BsaI GGTCTC 1 cut(s) 740
BsaJI CCNNGG 2 cut(s) 49, 323
BsaXI ACNNNNNCTCC 4 cut(s) 234, 264, 659, 689
Bsc4I CCNNNNNNNGG 5 cut(s) 296, 329, 463, 497, 553
Bse1I ACTGG 2 cut(s) 401, 427
Bse3DI GCAATG 2 cut(s) 485, 533
BseBI CCWGG 1 cut(s) 325
BseDI CCNNGG 2 cut(s) 49, 323
BseGI GGATG 2 cut(s) 70, 663
BseLI CCNNNNNNNGG 5 cut(s) 296, 329, 463, 497, 553
BseMI GCAATG 2 cut(s) 485, 533
BseMII CTCAG 3 cut(s) 128, 149, 384
BseNI ACTGG 2 cut(s) 401, 427
BseRI GAGGAG 5 cut(s) 146, 236, 239, 279, 345
BseXI GCAGC 5 cut(s) 27, 42, 106, 134, 683
BseYI CCCAGC 1 cut(s) 33
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 472
BslI CCNNNNNNNGG 5 cut(s) 296, 329, 463, 497, 553
BsmAI GTCTC 2 cut(s) 571, 740
BsmI GAATGC 2 cut(s) 76, 529
BsnI GGCC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 740
Bsp1286I GDGCHC 1 cut(s) 324
Bsp143I GATC 2 cut(s) 172, 609
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 3 cut(s) 129, 150, 383
BspLI GGNNCC 1 cut(s) 474
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 1 cut(s) 604
BspQI GCTCTTC 1 cut(s) 236
BspT107I GGYRCC 1 cut(s) 472
BspTNI GGTCTC 1 cut(s) 740
BsrDI GCAATG 2 cut(s) 485, 533
BsrI ACTGG 2 cut(s) 401, 427
BssECI CCNNGG 2 cut(s) 49, 323
BssMI GATC 2 cut(s) 172, 609
BssT1I CCWWGG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 325
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 5 cut(s) 137, 236, 375, 453, 701
BstC8I GCNNGC 1 cut(s) 503
BstDEI CTNAG 4 cut(s) 26, 137, 158, 370
BstENI CCTNNNNNAGG 1 cut(s) 495
BstF5I GGATG 2 cut(s) 70, 663
BstKTI GATC 2 cut(s) 175, 612
BstMAI GTCTC 2 cut(s) 571, 740
BstMBI GATC 2 cut(s) 172, 609
BstMWI GCNNNNNNNGC 1 cut(s) 481
BstNI CCWGG 1 cut(s) 325
BstSCI CCNGG 1 cut(s) 323
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 5 cut(s) 27, 42, 106, 134, 683
BstV2I GAAGAC 1 cut(s) 387
BstX2I RGATCY 2 cut(s) 172, 609
BstYI RGATCY 2 cut(s) 172, 609
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 2 cut(s) 70, 663
BtsI GCAGTG 3 cut(s) 522, 644, 656
BtsIMutI CAGTG 4 cut(s) 522, 644, 656, 772
Cac8I GCNNGC 1 cut(s) 503
Cfr13I GGNCC 3 cut(s) 208, 530, 560
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 1 cut(s) 61
DdeI CTNAG 4 cut(s) 26, 137, 158, 370
DpnI GATC 2 cut(s) 174, 611
DpnII GATC 2 cut(s) 172, 609
Eam1104I CTCTTC 5 cut(s) 137, 236, 375, 453, 701
EarI CTCTTC 5 cut(s) 137, 236, 375, 453, 701
Eco130I CCWWGG 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 324
Eco31I GGTCTC 1 cut(s) 740
Eco47I GGWCC 2 cut(s) 530, 560
EcoNI CCTNNNNNAGG 1 cut(s) 495
EcoRII CCWGG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 40, 62, 90, 311
FalI AAGNNNNNCTT 2 cut(s) 489, 521
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 5 cut(s) 16, 31, 120, 123, 697
FokI GGATG 2 cut(s) 77, 650
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 5 cut(s) 16, 31, 120, 123, 697
GluI GCNGC 5 cut(s) 16, 31, 120, 123, 697
GsaI CCCAGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 524
HaeIII GGCC 1 cut(s) 209
Hin1II CATG 1 cut(s) 64
HindIII AAGCTT 1 cut(s) 503
HinfI GANTC 4 cut(s) 341, 599, 674, 731
HphI GGTGA 2 cut(s) 390, 624
Hpy166II GTNNAC 1 cut(s) 769
Hpy188I TCNGA 4 cut(s) 194, 373, 730, 745
Hpy188III TCNNGA 3 cut(s) 297, 541, 596
Hpy8I GTNNAC 1 cut(s) 769
HpyAV CCTTC 2 cut(s) 557, 716
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 4 cut(s) 15, 92, 122, 699
HpyF10VI GCNNNNNNNGC 1 cut(s) 481
HpyF3I CTNAG 4 cut(s) 26, 137, 158, 370
Hsp92II CATG 1 cut(s) 64
Kzo9I GATC 2 cut(s) 172, 609
LguI GCTCTTC 1 cut(s) 236
LmnI GCTCC 4 cut(s) 100, 133, 292, 543
Lsp1109I GCAGC 5 cut(s) 27, 42, 106, 134, 683
MaeIII GTNAC 1 cut(s) 619
MalI GATC 2 cut(s) 174, 611
MboI GATC 2 cut(s) 172, 609
MboII GAAGA 8 cut(s) 154, 223, 326, 357, 387, 392, 440, 718
MflI RGATCY 2 cut(s) 172, 609
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 7 cut(s) 300, 405, 414, 459, 467, 681, 739
MlyI GAGTC 3 cut(s) 335, 608, 668
MmeI TCCRAC 2 cut(s) 277, 369
MseI TTAA 2 cut(s) 680, 690
MspA1I CMGCKG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 325
Mva1269I GAATGC 2 cut(s) 76, 529
MvaI CCWGG 1 cut(s) 325
MwoI GCNNNNNNNGC 1 cut(s) 481
NdeII GATC 2 cut(s) 172, 609
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 474
NmuCI GTSAC 1 cut(s) 619
PciSI GCTCTTC 1 cut(s) 236
PctI GAATGC 2 cut(s) 76, 529
PfeI GAWTC 1 cut(s) 731
PkrI GCNGC 5 cut(s) 17, 32, 121, 124, 698
PleI GAGTC 3 cut(s) 335, 607, 668
PpsI GAGTC 3 cut(s) 335, 607, 668
Psp6I CCWGG 1 cut(s) 323
PspFI CCCAGC 1 cut(s) 33
PspGI CCWGG 1 cut(s) 323
PspN4I GGNNCC 1 cut(s) 474
PspPI GGNCC 3 cut(s) 208, 530, 560
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 2 cut(s) 172, 609
PvuII CAGCTG 1 cut(s) 33
SapI GCTCTTC 1 cut(s) 236
SaqAI TTAA 2 cut(s) 680, 690
SatI GCNGC 5 cut(s) 16, 31, 120, 123, 697
Sau3AI GATC 2 cut(s) 172, 609
Sau96I GGNCC 3 cut(s) 208, 530, 560
SchI GAGTC 3 cut(s) 335, 608, 668
ScrFI CCNGG 1 cut(s) 325
SduI GDGCHC 1 cut(s) 324
SetI ASST 9 cut(s) 35, 105, 138, 168, 289, 507, 589, 595, 619
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 2 cut(s) 530, 560
SmlI CTYRAG 2 cut(s) 236, 596
SmoI CTYRAG 2 cut(s) 236, 596
Sse9I AATT 7 cut(s) 300, 405, 414, 459, 467, 681, 739
StyD4I CCNGG 1 cut(s) 323
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 1 cut(s) 97
TasI AATT 7 cut(s) 300, 405, 414, 459, 467, 681, 739
TfiI GAWTC 1 cut(s) 731
Tru1I TTAA 2 cut(s) 680, 690
Tru9I TTAA 2 cut(s) 680, 690
TscAI CASTG 3 cut(s) 522, 651, 663
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 5 cut(s) 15, 30, 119, 122, 696
Tsp45I GTSAC 1 cut(s) 619
TspRI CASTG 3 cut(s) 522, 651, 663
VpaK11BI GGWCC 2 cut(s) 530, 560
XagI CCTNNNNNAGG 1 cut(s) 495
XapI RAATTY 1 cut(s) 300
XcmI CCANNNNNNNNNTGG 1 cut(s) 570
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.