FvH4_3g30750

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011938
Physical Location & Seq
Reverse (-)
24140261 .. 24141999
1739 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g30750.t2

Sequence Viewer

Length: 780 bp
ATGGACAACCAATGCAGCCCTTTGCTCAGCAGCTGGGCATACTACTGCCAGGGAAAGAGCATGGAAGACTTGAGGCATTCCCTTTTGTATGCAACTATGGAGCTGGAACAAACAAGGGCTGCAGCACAAGAGGAGCTGAGGAAGAGAGATGAGCAATTGAGCCACCTCAGAGATCTGCTTAACAATGCTATCAGAGAAAAAGATGAAGCCCAAGACAAATGCCAAAGACTCTTCCTTGAGAAACTCCTCCTCCAACAACAGCTTCAACAACAACACAACCACACAGCTCCTCTCTCTGGGATGTCAAGCATAGAAGATGATCCCAGAAGAGGAGGGATTGACTCCAACAATGGTGGAGGCTTTTCTTCCTCAGATTGTGAAGAGAGTATTGTGTCTTCACCAGTAATTGACCCAATTCCACCAACCCAGTTGCCATTACCACCATCATCTCTTCAGAAACAAATTGGGAATTTAGTGCCTGACAAGCCATTGCCTGAAAAGGGCAAGCTTTTACAGGCAGTGAGAAATGCTGGTCCATTACTCCAGACCCTTCTTTTGGCTGGACCACTCCCTCAATGGAGACACCCACCTCCTCCTCTTGAGTCCTTTGAGATCCCACCTGTCACTATTACTTCACCACCAATACCACTGCCAAAGCCACTGCTCCTCCACCAAGACTCCTTACTTAGTGTTAATGGCTGCAACAGGAAGAGGGCTCTTTGTGAAGGCTCTGACTCCCCTAATTCAGAGACCAAGTACCAAAGAGTAGTCCACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

260

Amino Acids

28.84

Weight (kDa)

5.91

Isoelectric Point (pI)

65.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 2 - 238 3.6e-91 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28140 AT3G44940 AT5G22930
fragaria_vesca FvH4_3g30750 FvH4_3g30750
malus_domestica MD03G1126900.v1.1 MD11G1147500.v1.1
prunus_persica Prupe.6G112200_v2.0.a1
pyrus_communis pycom11g12080
rosa_chinensis RchiOBHm_Chr5g0056941
rosa_laevigata RLG00000035141
rosa_multiflora Rmu_sc0002035.1_g000007
rosa_roxburghii Rroxscaffold_1G00023250
rosa_rugosa Rorug05G0304500
rosa_samantha Rh5AG373900 Rh5BG384900 Rh5CG408200 Rh5DG398300
rosa_wichuraiana Rw5G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 314, 607
AcsI RAATTY 1 cut(s) 469
AcuI CTGAAG 1 cut(s) 437
AfaI GTAC 1 cut(s) 758
AfiI CCNNNNNNNGG 4 cut(s) 296, 329, 500, 556
AgsI TTSAA 1 cut(s) 266
AjnI CCWGG 1 cut(s) 48
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AluBI AGCT 6 cut(s) 33, 103, 136, 262, 287, 508
AluI AGCT 6 cut(s) 33, 103, 136, 262, 287, 508
Alw26I GTCTC 2 cut(s) 574, 743
AlwI GGATC 2 cut(s) 314, 607
AlwNI CAGNNNCTG 1 cut(s) 33
ApeKI GCWGC 5 cut(s) 15, 30, 119, 122, 699
ApoI RAATTY 1 cut(s) 469
ArsI GACNNNNNNTTYG 2 cut(s) 538, 570
AspS9I GGNCC 2 cut(s) 533, 563
AsuHPI GGTGA 2 cut(s) 390, 627
AvaII GGWCC 2 cut(s) 533, 563
BanII GRGCYC 1 cut(s) 718
BarI GAAGNNNNNNTAC 2 cut(s) 379, 411
BbsI GAAGAC 2 cut(s) 72, 387
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 5 cut(s) 27, 42, 106, 134, 686
BccI CCATC 1 cut(s) 451
BciT130I CCWGG 1 cut(s) 50
BcoDI GTCTC 2 cut(s) 574, 743
BfmI CTRYAG 1 cut(s) 120
BglII AGATCT 1 cut(s) 172
BisI GCNGC 5 cut(s) 16, 31, 120, 123, 700
BlpI GCTNAGC 1 cut(s) 26
BlsI GCNGC 5 cut(s) 17, 32, 121, 124, 701
Bme1390I CCNGG 1 cut(s) 50
Bme18I GGWCC 2 cut(s) 533, 563
BmgT120I GGNCC 2 cut(s) 533, 563
BmrFI CCNGG 1 cut(s) 50
BmrI ACTGGG 1 cut(s) 421
BmuI ACTGGG 1 cut(s) 421
BpiI GAAGAC 2 cut(s) 72, 387
BpmI CTGGAG 1 cut(s) 527
Bpu10I CCTNAGC 1 cut(s) 137
Bpu1102I GCTNAGC 1 cut(s) 26
BpuEI CTTGAG 3 cut(s) 91, 257, 620
BsaI GGTCTC 1 cut(s) 743
BsaJI CCNNGG 1 cut(s) 49
BsaXI ACNNNNNCTCC 6 cut(s) 234, 264, 651, 662, 681, 692
Bsc4I CCNNNNNNNGG 4 cut(s) 296, 329, 500, 556
Bse1I ACTGG 2 cut(s) 401, 427
Bse3DI GCAATG 1 cut(s) 488
BseBI CCWGG 1 cut(s) 50
BseDI CCNNGG 1 cut(s) 49
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 4 cut(s) 296, 329, 500, 556
BseMI GCAATG 1 cut(s) 488
BseMII CTCAG 4 cut(s) 40, 128, 181, 384
BseNI ACTGG 2 cut(s) 401, 427
BseRI GAGGAG 8 cut(s) 146, 236, 239, 279, 345, 582, 585, 656
BseXI GCAGC 5 cut(s) 27, 42, 106, 134, 686
BseYI CCCAGC 1 cut(s) 33
BslI CCNNNNNNNGG 4 cut(s) 296, 329, 500, 556
BsmAI GTCTC 2 cut(s) 574, 743
BsmI GAATGC 1 cut(s) 76
Bso31I GGTCTC 1 cut(s) 743
Bsp1286I GDGCHC 1 cut(s) 718
Bsp143I GATC 3 cut(s) 172, 319, 612
Bsp1720I GCTNAGC 1 cut(s) 26
BspCNI CTCAG 4 cut(s) 39, 129, 180, 383
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 2 cut(s) 314, 607
BspTNI GGTCTC 1 cut(s) 743
BsrDI GCAATG 1 cut(s) 488
BsrI ACTGG 2 cut(s) 401, 427
BssECI CCNNGG 1 cut(s) 49
BssMI GATC 3 cut(s) 172, 319, 612
Bst2UI CCWGG 1 cut(s) 50
Bst6I CTCTTC 6 cut(s) 137, 236, 322, 375, 456, 704
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 5 cut(s) 26, 137, 167, 370, 686
BstF5I GGATG 1 cut(s) 306
BstKTI GATC 3 cut(s) 175, 322, 615
BstMAI GTCTC 2 cut(s) 574, 743
BstMBI GATC 3 cut(s) 172, 319, 612
BstMWI GCNNNNNNNGC 1 cut(s) 484
BstNI CCWGG 1 cut(s) 50
BstSCI CCNGG 1 cut(s) 48
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 5 cut(s) 27, 42, 106, 134, 686
BstV2I GAAGAC 2 cut(s) 72, 387
BstX2I RGATCY 2 cut(s) 172, 612
BstYI RGATCY 2 cut(s) 172, 612
BtsCI GGATG 1 cut(s) 306
BtsI GCAGTG 3 cut(s) 525, 647, 659
BtsIMutI CAGTG 4 cut(s) 525, 647, 659, 775
Cac8I GCNNGC 1 cut(s) 506
CaiI CAGNNNCTG 1 cut(s) 33
Cfr13I GGNCC 2 cut(s) 533, 563
Csp6I GTAC 1 cut(s) 757
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 1 cut(s) 61
CviQI GTAC 1 cut(s) 757
DdeI CTNAG 5 cut(s) 26, 137, 167, 370, 686
DpnI GATC 3 cut(s) 174, 321, 614
DpnII GATC 3 cut(s) 172, 319, 612
Eam1104I CTCTTC 6 cut(s) 137, 236, 322, 375, 456, 704
EarI CTCTTC 6 cut(s) 137, 236, 322, 375, 456, 704
Eco24I GRGCYC 1 cut(s) 718
Eco31I GGTCTC 1 cut(s) 743
Eco47I GGWCC 2 cut(s) 533, 563
Eco57I CTGAAG 1 cut(s) 437
EcoRII CCWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 718
FaeI CATG 1 cut(s) 64
FaiI YATR 5 cut(s) 40, 62, 90, 98, 311
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 5 cut(s) 16, 31, 120, 123, 700
FokI GGATG 1 cut(s) 313
FriOI GRGCYC 1 cut(s) 718
Fsp4HI GCNGC 5 cut(s) 16, 31, 120, 123, 700
GluI GCNGC 5 cut(s) 16, 31, 120, 123, 700
GsaI CCCAGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 527
Hin1II CATG 1 cut(s) 64
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 5 cut(s) 228, 341, 602, 677, 734
HphI GGTGA 2 cut(s) 390, 627
Hpy166II GTNNAC 1 cut(s) 772
Hpy188I TCNGA 6 cut(s) 170, 194, 373, 456, 733, 748
Hpy188III TCNNGA 2 cut(s) 544, 599
Hpy8I GTNNAC 1 cut(s) 772
HpyAV CCTTC 2 cut(s) 560, 719
HpyCH4V TGCA 4 cut(s) 15, 92, 122, 702
HpyF10VI GCNNNNNNNGC 1 cut(s) 484
HpyF3I CTNAG 5 cut(s) 26, 137, 167, 370, 686
Hsp92II CATG 1 cut(s) 64
Kzo9I GATC 3 cut(s) 172, 319, 612
LmnI GCTCC 4 cut(s) 100, 133, 292, 669
Lsp1109I GCAGC 5 cut(s) 27, 42, 106, 134, 686
MaeIII GTNAC 1 cut(s) 622
MalI GATC 3 cut(s) 174, 321, 614
MboI GATC 3 cut(s) 172, 319, 612
MfeI CAATTG 1 cut(s) 155
MflI RGATCY 2 cut(s) 172, 612
MhlI GDGCHC 1 cut(s) 718
MluCI AATT 6 cut(s) 155, 405, 414, 462, 469, 742
MlyI GAGTC 5 cut(s) 222, 335, 611, 671, 728
MmeI TCCRAC 2 cut(s) 277, 369
MseI TTAA 2 cut(s) 180, 693
MspA1I CMGCKG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 50
MunI CAATTG 1 cut(s) 155
Mva1269I GAATGC 1 cut(s) 76
MvaI CCWGG 1 cut(s) 50
MwoI GCNNNNNNNGC 1 cut(s) 484
NdeII GATC 3 cut(s) 172, 319, 612
NlaIII CATG 1 cut(s) 64
NmuCI GTSAC 1 cut(s) 622
PctI GAATGC 1 cut(s) 76
PkrI GCNGC 5 cut(s) 17, 32, 121, 124, 701
PleI GAGTC 5 cut(s) 222, 335, 610, 671, 728
PpsI GAGTC 5 cut(s) 222, 335, 610, 671, 728
Psp6I CCWGG 1 cut(s) 48
PspFI CCCAGC 1 cut(s) 33
PspGI CCWGG 1 cut(s) 48
PspPI GGNCC 2 cut(s) 533, 563
PstI CTGCAG 1 cut(s) 124
PstNI CAGNNNCTG 1 cut(s) 33
PsuI RGATCY 2 cut(s) 172, 612
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 1 cut(s) 758
RsaNI GTAC 1 cut(s) 757
SaqAI TTAA 2 cut(s) 180, 693
SatI GCNGC 5 cut(s) 16, 31, 120, 123, 700
Sau3AI GATC 3 cut(s) 172, 319, 612
Sau96I GGNCC 2 cut(s) 533, 563
SchI GAGTC 5 cut(s) 222, 335, 611, 671, 728
ScrFI CCNGG 1 cut(s) 50
SduI GDGCHC 1 cut(s) 718
SetI ASST 9 cut(s) 35, 105, 138, 168, 264, 289, 510, 592, 622
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 2 cut(s) 533, 563
SmlI CTYRAG 3 cut(s) 70, 236, 599
SmoI CTYRAG 3 cut(s) 70, 236, 599
Sse9I AATT 6 cut(s) 155, 405, 414, 462, 469, 742
StyD4I CCNGG 1 cut(s) 48
TasI AATT 6 cut(s) 155, 405, 414, 462, 469, 742
Tru1I TTAA 2 cut(s) 180, 693
Tru9I TTAA 2 cut(s) 180, 693
TscAI CASTG 3 cut(s) 525, 654, 666
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 5 cut(s) 15, 30, 119, 122, 699
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 1 cut(s) 219
TspRI CASTG 3 cut(s) 525, 654, 666
VpaK11BI GGWCC 2 cut(s) 533, 563
XapI RAATTY 1 cut(s) 469
XcmI CCANNNNNNNNNTGG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.