RLG00000035141

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011938
Physical Location & Seq
Reverse (-)
61543583 .. 61544525
943 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000035141

Sequence Viewer

Length: 780 bp
ATGGACAATCAATGCAGCCCTTTACTTAGCAGCTGGGCATACTACTGCCAAGGAAAGAGCATGGATGATTTGAGGCATTCCCTTTTGTATGCAACTGTGGAGCTTGAACAAACGAGGGCTGCAGCTCAAGAGGAGCTGAGGAAGAGAGATGAGCAACTGAGCCACCTCAAAGATCTGCTCAACAATGCTATCAGAGAAAAAGATGAGGCCCAAGAGAAATGCCAAAGACTCTTCCTTGAGAAACTCCTCCTCCAACAGCAGCATCAGCAACAACAACACAACCACACAGCTCCTCTGTCTGGAATTTCAAGCATAGAAGATGAGCCCAGGAGAGGAGGGATTGACTCCAACAATGGTGGAGGGTTTTCTTCCTCGGATTGTGAAGAGAGCATTGTGTCTTCACCAGTAATTGACACAATTCCACCAACCCAGTTGCCATTTCCATCATCTCTTCAAAACCAAATTGGGGAATTGGTGCCTGACAAGCCATTGCCTGAAAAAGGCAAGCTTTTACAGGCAGTGAGGAATGCTGGTCCATTGCTCCAGACCCTTCTTTTGGCTGGACCACTCCCTCAATGGAGACACCCACCTCCTCCTCTTGAGTCCTTTGAGATCCCACCTGTCACTATTACTTCACCACCAATACCACTGCCAAAGCCACTGCTCATCCACCAAGACTCCTTGATTAGTGTTAATGGCTGCAACAGGAAGAGGGTTCATTGTGAAGGCTCTGATTCTCCTAATTCAGAGACCAAGTACCAAAGAGTAGTCCACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

260

Amino Acids

28.92

Weight (kDa)

5.8

Isoelectric Point (pI)

60.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 19 - 256 1.6e-92 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28140 AT3G44940 AT5G22930
fragaria_vesca FvH4_3g30750 FvH4_3g30750
malus_domestica MD03G1126900.v1.1 MD11G1147500.v1.1
prunus_persica Prupe.6G112200_v2.0.a1
pyrus_communis pycom11g12080
rosa_chinensis RchiOBHm_Chr5g0056941
rosa_laevigata RLG00000035141
rosa_multiflora Rmu_sc0002035.1_g000007
rosa_roxburghii Rroxscaffold_1G00023250
rosa_rugosa Rorug05G0304500
rosa_samantha Rh5AG373900 Rh5BG384900 Rh5CG408200 Rh5DG398300
rosa_wichuraiana Rw5G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 475
AclWI GGATC 1 cut(s) 607
AcsI RAATTY 1 cut(s) 303
AfaI GTAC 1 cut(s) 758
AfiI CCNNNNNNNGG 5 cut(s) 299, 332, 466, 500, 556
AgsI TTSAA 3 cut(s) 107, 309, 455
AjnI CCWGG 1 cut(s) 326
AluBI AGCT 6 cut(s) 33, 103, 125, 136, 290, 508
AluI AGCT 6 cut(s) 33, 103, 125, 136, 290, 508
Alw26I GTCTC 2 cut(s) 574, 743
AlwI GGATC 1 cut(s) 607
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 6 cut(s) 15, 30, 119, 122, 259, 699
ApoI RAATTY 1 cut(s) 303
ArsI GACNNNNNNTTYG 2 cut(s) 538, 570
AspS9I GGNCC 3 cut(s) 208, 533, 563
AsuHPI GGTGA 2 cut(s) 393, 627
AvaII GGWCC 2 cut(s) 533, 563
BanI GGYRCC 1 cut(s) 475
BanII GRGCYC 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 390
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 6 cut(s) 27, 42, 106, 134, 271, 686
BccI CCATC 1 cut(s) 451
BciT130I CCWGG 1 cut(s) 328
BcoDI GTCTC 2 cut(s) 574, 743
BfmI CTRYAG 1 cut(s) 120
BglII AGATCT 1 cut(s) 172
BisI GCNGC 6 cut(s) 16, 31, 120, 123, 260, 700
BlsI GCNGC 6 cut(s) 17, 32, 121, 124, 261, 701
Bme1390I CCNGG 1 cut(s) 328
Bme18I GGWCC 2 cut(s) 533, 563
BmgT120I GGNCC 3 cut(s) 208, 533, 563
BmiI GGNNCC 1 cut(s) 477
BmrFI CCNGG 1 cut(s) 328
BmrI ACTGGG 1 cut(s) 424
BmsI GCATC 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 424
BpiI GAAGAC 1 cut(s) 390
BpmI CTGGAG 1 cut(s) 527
Bpu10I CCTNAGC 1 cut(s) 137
BpuEI CTTGAG 3 cut(s) 111, 257, 620
BsaI GGTCTC 1 cut(s) 743
BsaJI CCNNGG 3 cut(s) 49, 326, 372
BsaXI ACNNNNNCTCC 4 cut(s) 234, 264, 662, 692
Bsc4I CCNNNNNNNGG 5 cut(s) 299, 332, 466, 500, 556
Bse1I ACTGG 2 cut(s) 404, 430
Bse3DI GCAATG 2 cut(s) 488, 536
BseBI CCWGG 1 cut(s) 328
BseDI CCNNGG 3 cut(s) 49, 326, 372
BseGI GGATG 2 cut(s) 70, 666
BseLI CCNNNNNNNGG 5 cut(s) 299, 332, 466, 500, 556
BseMI GCAATG 2 cut(s) 488, 536
BseMII CTCAG 2 cut(s) 128, 149
BseNI ACTGG 2 cut(s) 404, 430
BseRI GAGGAG 7 cut(s) 146, 236, 239, 282, 348, 582, 585
BseXI GCAGC 6 cut(s) 27, 42, 106, 134, 271, 686
BseYI CCCAGC 1 cut(s) 33
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 475
BslI CCNNNNNNNGG 5 cut(s) 299, 332, 466, 500, 556
BsmAI GTCTC 2 cut(s) 574, 743
BsmI GAATGC 2 cut(s) 76, 532
BsnI GGCC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 743
Bsp1286I GDGCHC 1 cut(s) 327
Bsp143I GATC 2 cut(s) 172, 612
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 2 cut(s) 129, 150
BspLI GGNNCC 1 cut(s) 477
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 1 cut(s) 607
BspT107I GGYRCC 1 cut(s) 475
BspTNI GGTCTC 1 cut(s) 743
BsrDI GCAATG 2 cut(s) 488, 536
BsrI ACTGG 2 cut(s) 404, 430
BssECI CCNNGG 3 cut(s) 49, 326, 372
BssMI GATC 2 cut(s) 172, 612
BssT1I CCWWGG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 97
Bst6I CTCTTC 5 cut(s) 137, 236, 378, 456, 704
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 3 cut(s) 26, 137, 158
BstENI CCTNNNNNAGG 1 cut(s) 498
BstF5I GGATG 2 cut(s) 70, 666
BstKTI GATC 2 cut(s) 175, 615
BstMAI GTCTC 2 cut(s) 574, 743
BstMBI GATC 2 cut(s) 172, 612
BstMWI GCNNNNNNNGC 2 cut(s) 265, 484
BstNI CCWGG 1 cut(s) 328
BstSCI CCNGG 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 6 cut(s) 27, 42, 106, 134, 271, 686
BstV2I GAAGAC 1 cut(s) 390
BstX2I RGATCY 2 cut(s) 172, 612
BstYI RGATCY 2 cut(s) 172, 612
BsuRI GGCC 1 cut(s) 209
BtsCI GGATG 2 cut(s) 70, 666
BtsI GCAGTG 3 cut(s) 525, 647, 659
BtsIMutI CAGTG 4 cut(s) 525, 647, 659, 775
Cac8I GCNNGC 1 cut(s) 506
Cfr13I GGNCC 3 cut(s) 208, 533, 563
Csp6I GTAC 1 cut(s) 757
CspCI CAANNNNNGTGG 2 cut(s) 337, 372
CviAII CATG 1 cut(s) 61
CviQI GTAC 1 cut(s) 757
DdeI CTNAG 3 cut(s) 26, 137, 158
DpnI GATC 2 cut(s) 174, 614
DpnII GATC 2 cut(s) 172, 612
Eam1104I CTCTTC 5 cut(s) 137, 236, 378, 456, 704
EarI CTCTTC 5 cut(s) 137, 236, 378, 456, 704
Eco130I CCWWGG 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 327
Eco31I GGTCTC 1 cut(s) 743
Eco47I GGWCC 2 cut(s) 533, 563
EcoNI CCTNNNNNAGG 1 cut(s) 498
EcoRII CCWGG 1 cut(s) 326
EcoT14I CCWWGG 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 327
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 40, 62, 90, 314
FalI AAGNNNNNCTT 2 cut(s) 492, 524
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 6 cut(s) 16, 31, 120, 123, 260, 700
FokI GGATG 2 cut(s) 77, 653
FriOI GRGCYC 1 cut(s) 327
Fsp4HI GCNGC 6 cut(s) 16, 31, 120, 123, 260, 700
GluI GCNGC 6 cut(s) 16, 31, 120, 123, 260, 700
GsaI CCCAGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 527
HaeIII GGCC 1 cut(s) 209
Hin1II CATG 1 cut(s) 64
HindIII AAGCTT 1 cut(s) 506
HinfI GANTC 5 cut(s) 228, 344, 602, 677, 734
HphI GGTGA 2 cut(s) 393, 627
Hpy166II GTNNAC 1 cut(s) 772
Hpy188I TCNGA 4 cut(s) 194, 376, 733, 748
Hpy188III TCNNGA 4 cut(s) 128, 300, 544, 599
Hpy8I GTNNAC 1 cut(s) 772
HpyAV CCTTC 2 cut(s) 560, 719
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 4 cut(s) 15, 92, 122, 702
HpyF10VI GCNNNNNNNGC 2 cut(s) 265, 484
HpyF3I CTNAG 3 cut(s) 26, 137, 158
Hsp92II CATG 1 cut(s) 64
Kzo9I GATC 2 cut(s) 172, 612
LmnI GCTCC 4 cut(s) 100, 133, 295, 546
Lsp1109I GCAGC 6 cut(s) 27, 42, 106, 134, 271, 686
LweI GCATC 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 622
MalI GATC 2 cut(s) 174, 614
MboI GATC 2 cut(s) 172, 612
MboII GAAGA 8 cut(s) 154, 223, 329, 360, 390, 395, 443, 721
MflI RGATCY 2 cut(s) 172, 612
MhlI GDGCHC 1 cut(s) 327
MluCI AATT 6 cut(s) 303, 408, 417, 462, 470, 742
MlyI GAGTC 4 cut(s) 222, 338, 611, 671
MmeI TCCRAC 2 cut(s) 277, 372
MseI TTAA 1 cut(s) 693
MspA1I CMGCKG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 328
Mva1269I GAATGC 2 cut(s) 76, 532
MvaI CCWGG 1 cut(s) 328
MwoI GCNNNNNNNGC 2 cut(s) 265, 484
NdeII GATC 2 cut(s) 172, 612
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 477
NmuCI GTSAC 1 cut(s) 622
PctI GAATGC 2 cut(s) 76, 532
PfeI GAWTC 1 cut(s) 734
PkrI GCNGC 6 cut(s) 17, 32, 121, 124, 261, 701
PleI GAGTC 4 cut(s) 222, 338, 610, 671
PpsI GAGTC 4 cut(s) 222, 338, 610, 671
Psp6I CCWGG 1 cut(s) 326
PspFI CCCAGC 1 cut(s) 33
PspGI CCWGG 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 477
PspPI GGNCC 3 cut(s) 208, 533, 563
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 2 cut(s) 172, 612
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 1 cut(s) 758
RsaNI GTAC 1 cut(s) 757
SaqAI TTAA 1 cut(s) 693
SatI GCNGC 6 cut(s) 16, 31, 120, 123, 260, 700
Sau3AI GATC 2 cut(s) 172, 612
Sau96I GGNCC 3 cut(s) 208, 533, 563
SchI GAGTC 4 cut(s) 222, 338, 611, 671
ScrFI CCNGG 1 cut(s) 328
SduI GDGCHC 1 cut(s) 327
SetI ASST 9 cut(s) 35, 105, 127, 138, 168, 292, 510, 592, 622
SfaNI GCATC 1 cut(s) 271
SfcI CTRYAG 1 cut(s) 120
SinI GGWCC 2 cut(s) 533, 563
SmlI CTYRAG 3 cut(s) 126, 236, 599
SmoI CTYRAG 3 cut(s) 126, 236, 599
Sse9I AATT 6 cut(s) 303, 408, 417, 462, 470, 742
StyD4I CCNGG 1 cut(s) 326
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 1 cut(s) 97
TasI AATT 6 cut(s) 303, 408, 417, 462, 470, 742
TfiI GAWTC 1 cut(s) 734
Tru1I TTAA 1 cut(s) 693
Tru9I TTAA 1 cut(s) 693
TscAI CASTG 3 cut(s) 525, 654, 666
TseFI GTSAC 1 cut(s) 622
TseI GCWGC 6 cut(s) 15, 30, 119, 122, 259, 699
Tsp45I GTSAC 1 cut(s) 622
TspDTI ATGAA 1 cut(s) 707
TspRI CASTG 3 cut(s) 525, 654, 666
VpaK11BI GGWCC 2 cut(s) 533, 563
XagI CCTNNNNNAGG 1 cut(s) 498
XapI RAATTY 1 cut(s) 303
XcmI CCANNNNNNNNNTGG 1 cut(s) 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.