AT3G44940

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011938
Physical Location & Seq
Reverse (-)
16413334 .. 16415319
1986 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G44940.1

Sequence Viewer

Length: 753 bp
ATGGACCAAAGCAATTCTCTTCTTAGCTGGACTTACTTCTCTCATGGAAAGACAACGGAAGAGCTAAGACAGACTCTCGTGTACACAACAATGGAGTTAGAACAAACAAAGCTTGTGGCTCACGAGGAGCTAAGGAAGAGAGATGAACAACTGATCCACCTAGAAGATGTTTTAACCAAAACCCTCAAAGAAAGAGACGAAGCTCTAGAGAAATATAATCATCTCCTCTTAAATAATCTCTTACTTCAACAGAAGCAGCAACAGAATCAGAATCAGAAACAAGAACTTGTCACTCCTCCTTTATCAGGAGCTTCAAGTATTATTGAAGACGAGCAAGTTCAGCCACAGCAGCCGCAGCTTAACTCAAACAAGAGCTTTTCGTCTTCAGACACTGAAGAAAGCATCATGTCACCATCAGTGATTGATCCAGTGACGATGAACCAACAGATTGAAGTCTCAGGAGATGAGATGTTGGCTACATTGTTGCCTGACAAACCACTGCCTGAAAAGGGAAAACTCTTACAAGCTGTTATCAAGGCAGGTCCTTTGCTTCAGACACTTCTCTTAGCTGGTCCTCTGCCTCAATGGCGCCACCCACCGCCTCCACTTGAGACCTCTGAGATCCCTCCTGTCACCATTCCACTACCTCAGTTTCAGAACAATGGCTGTGGGAACTCCAACAAGAAAAGGGCATTCTCAATCTCAGATGAAACTTATTCAGAGACTAAGTATCAGAAAGTTCTTCTCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

250

Amino Acids

28.32

Weight (kDa)

5.13

Isoelectric Point (pI)

56.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 17 - 247 2.5e-90 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28140 AT3G44940 AT5G22930
fragaria_vesca FvH4_3g30750 FvH4_3g30750
malus_domestica MD03G1126900.v1.1 MD11G1147500.v1.1
prunus_persica Prupe.6G112200_v2.0.a1
pyrus_communis pycom11g12080
rosa_chinensis RchiOBHm_Chr5g0056941
rosa_laevigata RLG00000035141
rosa_multiflora Rmu_sc0002035.1_g000007
rosa_roxburghii Rroxscaffold_1G00023250
rosa_rugosa Rorug05G0304500
rosa_samantha Rh5AG373900 Rh5BG384900 Rh5CG408200 Rh5DG398300
rosa_wichuraiana Rw5G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 530
AccB1I GGYRCC 1 cut(s) 588
AciI CCGC 2 cut(s) 353, 599
AclWI GGATC 3 cut(s) 148, 419, 616
AcuI CTGAAG 3 cut(s) 369, 414, 536
AcyI GRCGYC 1 cut(s) 589
AfaI GTAC 1 cut(s) 83
AfiI CCNNNNNNNGG 2 cut(s) 305, 509
AgsI TTSAA 4 cut(s) 248, 315, 326, 452
AloI GAACNNNNNNTCC 2 cut(s) 138, 170
Alw26I GTCTC 4 cut(s) 189, 460, 605, 716
AlwI GGATC 3 cut(s) 148, 419, 616
AlwNI CAGNNNCTG 1 cut(s) 392
ApeKI GCWGC 3 cut(s) 256, 349, 355
AspLEI GCGC 1 cut(s) 591
AspS9I GGNCC 3 cut(s) 4, 542, 572
AsuHPI GGTGA 2 cut(s) 402, 625
AvaII GGWCC 3 cut(s) 4, 542, 572
BanI GGYRCC 1 cut(s) 588
BauI CACGAG 2 cut(s) 77, 122
BbsI GAAGAC 2 cut(s) 333, 375
BbvI GCAGC 3 cut(s) 268, 361, 367
BccI CCATC 1 cut(s) 421
BcoDI GTCTC 4 cut(s) 189, 460, 605, 716
BfaI CTAG 2 cut(s) 161, 206
BfoI RGCGCY 1 cut(s) 592
BfuAI ACCTGC 1 cut(s) 530
BglI GCCNNNNNGGC 1 cut(s) 586
BisI GCNGC 4 cut(s) 257, 350, 353, 356
BlsI GCNGC 4 cut(s) 258, 351, 354, 357
Bme18I GGWCC 3 cut(s) 4, 542, 572
BmgT120I GGNCC 3 cut(s) 4, 542, 572
BmiI GGNNCC 1 cut(s) 590
BmsI GCATC 1 cut(s) 411
BpiI GAAGAC 2 cut(s) 333, 375
Bpu10I CCTNAGC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 629
BsaHI GRCGYC 1 cut(s) 589
BsaI GGTCTC 1 cut(s) 605
Bsc4I CCNNNNNNNGG 2 cut(s) 305, 509
Bse1I ACTGG 1 cut(s) 428
BseLI CCNNNNNNNGG 2 cut(s) 305, 509
BseMII CTCAG 4 cut(s) 471, 609, 662, 717
BseNI ACTGG 1 cut(s) 428
BseRI GAGGAG 3 cut(s) 140, 215, 285
BseXI GCAGC 3 cut(s) 268, 361, 367
BshNI GGYRCC 1 cut(s) 588
BslI CCNNNNNNNGG 2 cut(s) 305, 509
BsmAI GTCTC 4 cut(s) 189, 460, 605, 716
BsmBI CGTCTC 1 cut(s) 189
BsmI GAATGC 1 cut(s) 692
Bso31I GGTCTC 1 cut(s) 605
Bsp1407I TGTACA 1 cut(s) 81
Bsp143I GATC 3 cut(s) 153, 424, 621
BspACI CCGC 2 cut(s) 353, 599
BspCNI CTCAG 4 cut(s) 470, 610, 661, 716
BspLI GGNNCC 1 cut(s) 590
BspMI ACCTGC 1 cut(s) 530
BspPI GGATC 3 cut(s) 148, 419, 616
BspQI GCTCTTC 1 cut(s) 54
BspT107I GGYRCC 1 cut(s) 588
BspTNI GGTCTC 1 cut(s) 605
BsrGI TGTACA 1 cut(s) 81
BsrI ACTGG 1 cut(s) 428
BssMI GATC 3 cut(s) 153, 424, 621
BssNI GRCGYC 1 cut(s) 589
BssSI CACGAG 2 cut(s) 77, 122
Bst2BI CACGAG 2 cut(s) 77, 122
Bst6I CTCTTC 3 cut(s) 24, 54, 131
BstACI GRCGYC 1 cut(s) 589
BstAUI TGTACA 1 cut(s) 81
BstDEI CTNAG 9 cut(s) 23, 65, 131, 457, 565, 618, 648, 703, 726
BstENI CCTNNNNNAGG 1 cut(s) 303
BstH2I RGCGCY 1 cut(s) 592
BstHHI GCGC 1 cut(s) 591
BstKTI GATC 3 cut(s) 156, 427, 624
BstMAI GTCTC 4 cut(s) 189, 460, 605, 716
BstMBI GATC 3 cut(s) 153, 424, 621
BstMWI GCNNNNNNNGC 4 cut(s) 340, 349, 355, 586
BstV1I GCAGC 3 cut(s) 268, 361, 367
BstV2I GAAGAC 2 cut(s) 333, 375
BstX2I RGATCY 1 cut(s) 621
BstYI RGATCY 1 cut(s) 621
BtsI GCAGTG 1 cut(s) 497
BtsIMutI CAGTG 4 cut(s) 390, 423, 435, 497
BveI ACCTGC 1 cut(s) 530
CaiI CAGNNNCTG 1 cut(s) 392
CfoI GCGC 1 cut(s) 591
Cfr13I GGNCC 3 cut(s) 4, 542, 572
Csp6I GTAC 1 cut(s) 82
CspCI CAANNNNNGTGG 4 cut(s) 96, 131, 649, 684
CviAII CATG 2 cut(s) 44, 406
CviQI GTAC 1 cut(s) 82
DdeI CTNAG 9 cut(s) 23, 65, 131, 457, 565, 618, 648, 703, 726
DinI GGCGCC 1 cut(s) 590
DpnI GATC 3 cut(s) 155, 426, 623
DpnII GATC 3 cut(s) 153, 424, 621
Eam1104I CTCTTC 3 cut(s) 24, 54, 131
EarI CTCTTC 3 cut(s) 24, 54, 131
Eco31I GGTCTC 1 cut(s) 605
Eco47I GGWCC 3 cut(s) 4, 542, 572
Eco57I CTGAAG 3 cut(s) 369, 414, 536
EcoNI CCTNNNNNAGG 1 cut(s) 303
EcoO109I RGGNCCY 1 cut(s) 542
EgeI GGCGCC 1 cut(s) 590
EheI GGCGCC 1 cut(s) 590
Esp3I CGTCTC 1 cut(s) 189
FaeI CATG 2 cut(s) 47, 409
FaiI YATR 3 cut(s) 45, 216, 407
FatI CATG 2 cut(s) 43, 405
Fnu4HI GCNGC 4 cut(s) 257, 350, 353, 356
Fsp4HI GCNGC 4 cut(s) 257, 350, 353, 356
FspBI CTAG 2 cut(s) 161, 206
GlaI GCGC 1 cut(s) 590
GluI GCNGC 4 cut(s) 257, 350, 353, 356
HaeII RGCGCY 1 cut(s) 592
HhaI GCGC 1 cut(s) 591
Hin1I GRCGYC 1 cut(s) 589
Hin1II CATG 2 cut(s) 47, 409
Hin6I GCGC 1 cut(s) 589
HinP1I GCGC 1 cut(s) 589
HindIII AAGCTT 1 cut(s) 110
HinfI GANTC 3 cut(s) 73, 265, 271
HphI GGTGA 2 cut(s) 402, 625
Hpy166II GTNNAC 2 cut(s) 82, 84
Hpy188I TCNGA 9 cut(s) 270, 276, 388, 555, 619, 657, 706, 721, 735
Hpy188III TCNNGA 4 cut(s) 122, 206, 306, 459
Hpy8I GTNNAC 2 cut(s) 82, 84
HpyF10VI GCNNNNNNNGC 4 cut(s) 340, 349, 355, 586
HpyF3I CTNAG 9 cut(s) 23, 65, 131, 457, 565, 618, 648, 703, 726
Hsp92I GRCGYC 1 cut(s) 589
Hsp92II CATG 2 cut(s) 47, 409
HspAI GCGC 1 cut(s) 589
KasI GGCGCC 1 cut(s) 588
Kzo9I GATC 3 cut(s) 153, 424, 621
LguI GCTCTTC 1 cut(s) 54
LmnI GCTCC 2 cut(s) 127, 308
LpnPI CCDG 9 cut(s) 13, 291, 441, 444, 501, 516, 525, 555, 642
Lsp1109I GCAGC 3 cut(s) 268, 361, 367
LweI GCATC 1 cut(s) 411
MaeI CTAG 2 cut(s) 161, 206
MaeIII GTNAC 4 cut(s) 289, 408, 430, 631
MalI GATC 3 cut(s) 155, 426, 623
MboI GATC 3 cut(s) 153, 424, 621
MboII GAAGA 8 cut(s) 11, 71, 148, 176, 338, 375, 407, 734
MflI RGATCY 1 cut(s) 621
MluCI AATT 1 cut(s) 13
Mly113I GGCGCC 1 cut(s) 589
MlyI GAGTC 1 cut(s) 67
MmeI TCCRAC 1 cut(s) 702
MseI TTAA 4 cut(s) 173, 230, 360, 751
MslI CAYNNNNRTG 1 cut(s) 89
Mva1269I GAATGC 1 cut(s) 692
MwoI GCNNNNNNNGC 4 cut(s) 340, 349, 355, 586
NarI GGCGCC 1 cut(s) 589
NdeII GATC 3 cut(s) 153, 424, 621
NlaIII CATG 2 cut(s) 47, 409
NlaIV GGNNCC 1 cut(s) 590
NmuCI GTSAC 4 cut(s) 289, 408, 430, 631
PciSI GCTCTTC 1 cut(s) 54
PctI GAATGC 1 cut(s) 692
PfeI GAWTC 2 cut(s) 265, 271
PkrI GCNGC 4 cut(s) 258, 351, 354, 357
PleI GAGTC 1 cut(s) 67
PluTI GGCGCC 1 cut(s) 592
PpsI GAGTC 1 cut(s) 67
PpuMI RGGWCCY 1 cut(s) 542
Psp5II RGGWCCY 1 cut(s) 542
PspN4I GGNNCC 1 cut(s) 590
PspPI GGNCC 3 cut(s) 4, 542, 572
PspPPI RGGWCCY 1 cut(s) 542
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 1 cut(s) 621
RsaI GTAC 1 cut(s) 83
RsaNI GTAC 1 cut(s) 82
RseI CAYNNNNRTG 1 cut(s) 89
SapI GCTCTTC 1 cut(s) 54
SaqAI TTAA 4 cut(s) 173, 230, 360, 751
SatI GCNGC 4 cut(s) 257, 350, 353, 356
Sau3AI GATC 3 cut(s) 153, 424, 621
Sau96I GGNCC 3 cut(s) 4, 542, 572
SchI GAGTC 1 cut(s) 67
SfaNI GCATC 1 cut(s) 411
SfoI GGCGCC 1 cut(s) 590
SinI GGWCC 3 cut(s) 4, 542, 572
SmiMI CAYNNNNRTG 1 cut(s) 89
SmlI CTYRAG 1 cut(s) 608
SmoI CTYRAG 1 cut(s) 608
Sse9I AATT 1 cut(s) 13
SsiI CCGC 2 cut(s) 353, 599
SspDI GGCGCC 1 cut(s) 588
SspMI CTAG 2 cut(s) 161, 206
TasI AATT 1 cut(s) 13
TatI WGTACW 1 cut(s) 81
TauI GCSGC 1 cut(s) 355
TfiI GAWTC 2 cut(s) 265, 271
Tru1I TTAA 4 cut(s) 173, 230, 360, 751
Tru9I TTAA 4 cut(s) 173, 230, 360, 751
TscAI CASTG 4 cut(s) 397, 423, 435, 504
TseFI GTSAC 4 cut(s) 289, 408, 430, 631
TseI GCWGC 3 cut(s) 256, 349, 355
Tsp45I GTSAC 4 cut(s) 289, 408, 430, 631
TspDTI ATGAA 3 cut(s) 159, 452, 723
TspGWI ACGGA 1 cut(s) 71
TspRI CASTG 4 cut(s) 397, 423, 435, 504
VpaK11BI GGWCC 3 cut(s) 4, 542, 572
XagI CCTNNNNNAGG 1 cut(s) 303
XbaI TCTAGA 1 cut(s) 205
XspI CTAG 2 cut(s) 161, 206
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.