Rh5CG408200

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0011938
Physical Location & Seq
Reverse (-)
54807915 .. 54808842
928 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG408200.1

Sequence Viewer

Length: 765 bp
ATGGACAATCAATGCAGCCCTTTACTTAGCAGCTGGGCATACTACTGCCAAGGAAAGAGCATGGATGATTTGAGGCATTCCCTTTTGTATGCAACTGTGGAGCTTGAACAAACAAGGGCTGCAGCACAAGAAGAGCTGAGGAAGAGAGATGAGCAACTGTGCCACCTGAAAGATCTGCTCAACAATGCTATCAGAGAAAAAGATGAGGCCCAAGAGAAATGCCAAAGACTCTTCCTTGAGAAATTCCTCCTCCAACAACAACACAATCACACAGCTCCTCTGTCTGGAATTTCAAGCATAGAAGATGAGCCCAGGAGAGGAGGGATTGACTCCAACAATGGTGGAGGGTTTTCTTCCTCAGATTGTGAAGAGAGCATTGTGTCTTCACCAGTAATTGACACAATTCCACCAACCCAGTTGCCATTACCATCATCGCTTCAAAACCAAATTGGGGAATTGGTGCCTGACAAGCCATTGCCTGAAAAAGGCAAGCTTTTACAGGCAGTGAGGAATGCTGGTCCATTGCTCCAGACCCTTCTTTTGGCTGGACCACTCCCTCAATGGAGACACCCACCTCCTCCTCTCGAGTCCTTTGAGATCCCACCTGTCACTATTACTTCACCACCAATACCACTGCCAAAGCCACTGCTCATCCACCAAGACTCCTTAATTAGTGTTAATGGCTGCAACAGGAAGAGGGTTCTTTGTGAAGGCTCTGATTCCCCTAATTCAGAGACCAAGTACCAAAGAGTAGTCCACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

254

Amino Acids

28.26

Weight (kDa)

5.63

Isoelectric Point (pI)

60.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 19 - 251 9.7e-91 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28140 AT3G44940 AT5G22930
fragaria_vesca FvH4_3g30750 FvH4_3g30750
malus_domestica MD03G1126900.v1.1 MD11G1147500.v1.1
prunus_persica Prupe.6G112200_v2.0.a1
pyrus_communis pycom11g12080
rosa_chinensis RchiOBHm_Chr5g0056941
rosa_laevigata RLG00000035141
rosa_multiflora Rmu_sc0002035.1_g000007
rosa_roxburghii Rroxscaffold_1G00023250
rosa_rugosa Rorug05G0304500
rosa_samantha Rh5AG373900 Rh5BG384900 Rh5CG408200 Rh5DG398300
rosa_wichuraiana Rw5G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 460
AclWI GGATC 1 cut(s) 592
AcsI RAATTY 2 cut(s) 242, 288
AfaI GTAC 1 cut(s) 743
AfiI CCNNNNNNNGG 5 cut(s) 284, 317, 451, 485, 541
AgsI TTSAA 3 cut(s) 107, 294, 440
AjnI CCWGG 1 cut(s) 311
AluBI AGCT 5 cut(s) 33, 103, 136, 275, 493
AluI AGCT 5 cut(s) 33, 103, 136, 275, 493
Alw26I GTCTC 2 cut(s) 559, 728
AlwI GGATC 1 cut(s) 592
Ama87I CYCGRG 1 cut(s) 584
AoxI GGCC 1 cut(s) 207
ApeKI GCWGC 5 cut(s) 15, 30, 119, 122, 684
ApoI RAATTY 2 cut(s) 242, 288
ArsI GACNNNNNNTTYG 2 cut(s) 523, 555
AspS9I GGNCC 3 cut(s) 208, 518, 548
AsuHPI GGTGA 2 cut(s) 378, 612
AvaI CYCGRG 1 cut(s) 584
AvaII GGWCC 2 cut(s) 518, 548
BanI GGYRCC 1 cut(s) 460
BanII GRGCYC 1 cut(s) 312
BbsI GAAGAC 1 cut(s) 375
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 5 cut(s) 27, 42, 106, 134, 671
BccI CCATC 1 cut(s) 436
BciT130I CCWGG 1 cut(s) 313
BcoDI GTCTC 2 cut(s) 559, 728
BfmI CTRYAG 1 cut(s) 120
BglII AGATCT 1 cut(s) 172
BisI GCNGC 5 cut(s) 16, 31, 120, 123, 685
BlsI GCNGC 5 cut(s) 17, 32, 121, 124, 686
Bme1390I CCNGG 1 cut(s) 313
Bme18I GGWCC 2 cut(s) 518, 548
BmeT110I CYCGRG 1 cut(s) 584
BmgT120I GGNCC 3 cut(s) 208, 518, 548
BmiI GGNNCC 1 cut(s) 462
BmrFI CCNGG 1 cut(s) 313
BmrI ACTGGG 1 cut(s) 409
BmuI ACTGGG 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 375
BpmI CTGGAG 1 cut(s) 512
Bpu10I CCTNAGC 1 cut(s) 137
BpuEI CTTGAG 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 728
BsaJI CCNNGG 2 cut(s) 49, 311
BsaXI ACNNNNNCTCC 2 cut(s) 647, 677
Bsc4I CCNNNNNNNGG 5 cut(s) 284, 317, 451, 485, 541
Bse1I ACTGG 2 cut(s) 389, 415
Bse3DI GCAATG 2 cut(s) 473, 521
BseBI CCWGG 1 cut(s) 313
BseDI CCNNGG 2 cut(s) 49, 311
BseGI GGATG 2 cut(s) 70, 651
BseLI CCNNNNNNNGG 5 cut(s) 284, 317, 451, 485, 541
BseMI GCAATG 2 cut(s) 473, 521
BseMII CTCAG 2 cut(s) 128, 372
BseNI ACTGG 2 cut(s) 389, 415
BseRI GAGGAG 5 cut(s) 239, 267, 333, 567, 570
BseXI GCAGC 5 cut(s) 27, 42, 106, 134, 671
BseYI CCCAGC 1 cut(s) 33
BshFI GGCC 1 cut(s) 209
BshNI GGYRCC 1 cut(s) 460
BsiHKCI CYCGRG 1 cut(s) 584
BslI CCNNNNNNNGG 5 cut(s) 284, 317, 451, 485, 541
BsmAI GTCTC 2 cut(s) 559, 728
BsmI GAATGC 2 cut(s) 76, 517
BsnI GGCC 1 cut(s) 209
Bso31I GGTCTC 1 cut(s) 728
BsoBI CYCGRG 1 cut(s) 584
Bsp1286I GDGCHC 1 cut(s) 312
Bsp143I GATC 2 cut(s) 172, 597
BspANI GGCC 1 cut(s) 209
BspCNI CTCAG 2 cut(s) 129, 371
BspLI GGNNCC 1 cut(s) 462
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 1 cut(s) 592
BspQI GCTCTTC 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 460
BspTNI GGTCTC 1 cut(s) 728
BsrDI GCAATG 2 cut(s) 473, 521
BsrI ACTGG 2 cut(s) 389, 415
BssECI CCNNGG 2 cut(s) 49, 311
BssMI GATC 2 cut(s) 172, 597
BssT1I CCWWGG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 313
Bst4CI ACNGT 2 cut(s) 97, 159
Bst6I CTCTTC 5 cut(s) 126, 137, 236, 363, 689
BstC8I GCNNGC 1 cut(s) 491
BstDEI CTNAG 3 cut(s) 26, 137, 358
BstENI CCTNNNNNAGG 1 cut(s) 483
BstF5I GGATG 2 cut(s) 70, 651
BstKTI GATC 2 cut(s) 175, 600
BstMAI GTCTC 2 cut(s) 559, 728
BstMBI GATC 2 cut(s) 172, 597
BstMWI GCNNNNNNNGC 1 cut(s) 469
BstNI CCWGG 1 cut(s) 313
BstSCI CCNGG 1 cut(s) 311
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 5 cut(s) 27, 42, 106, 134, 671
BstV2I GAAGAC 1 cut(s) 375
BstX2I RGATCY 2 cut(s) 172, 597
BstYI RGATCY 2 cut(s) 172, 597
BsuRI GGCC 1 cut(s) 209
BtgZI GCGATG 1 cut(s) 417
BtsCI GGATG 2 cut(s) 70, 651
BtsI GCAGTG 3 cut(s) 510, 632, 644
BtsIMutI CAGTG 4 cut(s) 510, 632, 644, 760
Cac8I GCNNGC 1 cut(s) 491
Cfr13I GGNCC 3 cut(s) 208, 518, 548
Csp6I GTAC 1 cut(s) 742
CspCI CAANNNNNGTGG 2 cut(s) 322, 357
CviAII CATG 1 cut(s) 61
CviQI GTAC 1 cut(s) 742
DdeI CTNAG 3 cut(s) 26, 137, 358
DpnI GATC 2 cut(s) 174, 599
DpnII GATC 2 cut(s) 172, 597
Eam1104I CTCTTC 5 cut(s) 126, 137, 236, 363, 689
EarI CTCTTC 5 cut(s) 126, 137, 236, 363, 689
Eco130I CCWWGG 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 312
Eco31I GGTCTC 1 cut(s) 728
Eco47I GGWCC 2 cut(s) 518, 548
Eco88I CYCGRG 1 cut(s) 584
EcoNI CCTNNNNNAGG 1 cut(s) 483
EcoRII CCWGG 1 cut(s) 311
EcoT14I CCWWGG 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 312
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 40, 62, 90, 299
FalI AAGNNNNNCTT 2 cut(s) 477, 509
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 5 cut(s) 16, 31, 120, 123, 685
FokI GGATG 2 cut(s) 77, 638
FriOI GRGCYC 1 cut(s) 312
Fsp4HI GCNGC 5 cut(s) 16, 31, 120, 123, 685
GluI GCNGC 5 cut(s) 16, 31, 120, 123, 685
GsaI CCCAGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 512
HaeIII GGCC 1 cut(s) 209
Hin1II CATG 1 cut(s) 64
HindIII AAGCTT 1 cut(s) 491
HinfI GANTC 5 cut(s) 228, 329, 587, 662, 719
HphI GGTGA 2 cut(s) 378, 612
Hpy166II GTNNAC 1 cut(s) 757
Hpy188I TCNGA 4 cut(s) 194, 361, 718, 733
Hpy188III TCNNGA 3 cut(s) 285, 529, 584
Hpy8I GTNNAC 1 cut(s) 757
HpyAV CCTTC 2 cut(s) 545, 704
HpyCH4III ACNGT 2 cut(s) 97, 159
HpyCH4V TGCA 4 cut(s) 15, 92, 122, 687
HpyF10VI GCNNNNNNNGC 1 cut(s) 469
HpyF3I CTNAG 3 cut(s) 26, 137, 358
Hsp92II CATG 1 cut(s) 64
Kzo9I GATC 2 cut(s) 172, 597
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 3 cut(s) 100, 280, 531
Lsp1109I GCAGC 5 cut(s) 27, 42, 106, 134, 671
MaeIII GTNAC 1 cut(s) 607
MalI GATC 2 cut(s) 174, 599
MboI GATC 2 cut(s) 172, 597
MboII GAAGA 8 cut(s) 143, 154, 223, 314, 345, 375, 380, 706
MflI RGATCY 2 cut(s) 172, 597
MhlI GDGCHC 1 cut(s) 312
MluCI AATT 8 cut(s) 242, 288, 393, 402, 447, 455, 669, 727
MlyI GAGTC 4 cut(s) 222, 323, 596, 656
MmeI TCCRAC 2 cut(s) 277, 357
MseI TTAA 2 cut(s) 668, 678
MspA1I CMGCKG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 313
Mva1269I GAATGC 2 cut(s) 76, 517
MvaI CCWGG 1 cut(s) 313
MwoI GCNNNNNNNGC 1 cut(s) 469
NdeII GATC 2 cut(s) 172, 597
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 462
NmuCI GTSAC 1 cut(s) 607
PaeR7I CTCGAG 1 cut(s) 584
PciSI GCTCTTC 1 cut(s) 126
PctI GAATGC 2 cut(s) 76, 517
PfeI GAWTC 1 cut(s) 719
PkrI GCNGC 5 cut(s) 17, 32, 121, 124, 686
PleI GAGTC 4 cut(s) 222, 323, 595, 656
PpsI GAGTC 4 cut(s) 222, 323, 595, 656
Psp6I CCWGG 1 cut(s) 311
PspFI CCCAGC 1 cut(s) 33
PspGI CCWGG 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 462
PspPI GGNCC 3 cut(s) 208, 518, 548
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 2 cut(s) 172, 597
PvuII CAGCTG 1 cut(s) 33
RsaI GTAC 1 cut(s) 743
RsaNI GTAC 1 cut(s) 742
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 668, 678
SatI GCNGC 5 cut(s) 16, 31, 120, 123, 685
Sau3AI GATC 2 cut(s) 172, 597
Sau96I GGNCC 3 cut(s) 208, 518, 548
SchI GAGTC 4 cut(s) 222, 323, 596, 656
ScrFI CCNGG 1 cut(s) 313
SduI GDGCHC 1 cut(s) 312
SetI ASST 8 cut(s) 35, 105, 138, 168, 277, 495, 577, 607
SfcI CTRYAG 1 cut(s) 120
Sfr274I CTCGAG 1 cut(s) 584
SinI GGWCC 2 cut(s) 518, 548
SlaI CTCGAG 1 cut(s) 584
SmlI CTYRAG 2 cut(s) 236, 584
SmoI CTYRAG 2 cut(s) 236, 584
Sse9I AATT 8 cut(s) 242, 288, 393, 402, 447, 455, 669, 727
StyD4I CCNGG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 2 cut(s) 97, 159
TaqI TCGA 1 cut(s) 585
TasI AATT 8 cut(s) 242, 288, 393, 402, 447, 455, 669, 727
TfiI GAWTC 1 cut(s) 719
Tru1I TTAA 2 cut(s) 668, 678
Tru9I TTAA 2 cut(s) 668, 678
TscAI CASTG 3 cut(s) 510, 639, 651
TseFI GTSAC 1 cut(s) 607
TseI GCWGC 5 cut(s) 15, 30, 119, 122, 684
Tsp45I GTSAC 1 cut(s) 607
TspRI CASTG 3 cut(s) 510, 639, 651
VpaK11BI GGWCC 2 cut(s) 518, 548
XagI CCTNNNNNAGG 1 cut(s) 483
XapI RAATTY 2 cut(s) 242, 288
XcmI CCANNNNNNNNNTGG 1 cut(s) 558
XhoI CTCGAG 1 cut(s) 584
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.