MD03G1126900.v1.1

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0011938
Physical Location & Seq
Forward (+)
12184041 .. 12185880
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1126900.v1.1.491

Sequence Viewer

Length: 804 bp
ATGAACAGCCACCACAGCAGCAGCCCTCTTCTTAGCAGCTGGGCTTACTACTGCCAAGGAAAGAGCATGGAAGAGTTGAGGAGTTCTCTTTTGTACACAACAGTGGAGCTTGAGCAAACAAGAGTTGCAGTTCAAGAGGAGCTAAGAAAAAGAGACGATCAGATGTCTCATCTCAAAGATCTGCTCCAAAAAGCCATCAGAGAAAGAGATGAAGCCCAAGACAAATGCCAAAGACTCCTCCTTGAGAAACTCCTCCTCCAACAAACCCAGCAGCAAACCCAGCAGAAGCAGCAAACAGCTCCTCTCTCTGGTATTTCAAGCATCGAAGACGAACCCAGAAGAGGAATCGACTCCAACAATGGCTTCTCCTCCTCAGATTGTGAAGAAAGCATTGTCTCTTCCCCAGTTATTGACCCAATTCAGCAAACCCAGCAGCTGCCACCAGCACCATCCATGCCACACCCAGCAGTGGGGCTGCTGCCTGAGAAGCCATTGCCTGAAAAGGGAAAGCTTTTGCAGGCTGTGATGAAAGCTGGCCCATTGCTTCAGACCCTTCTTCTGGCCGGCCCTCTGCCGCAGTGGAGACACCCGCCACCGCCGCTGGAGTCGTTTGAGATCCCCCCTGTGACCATTCCTTCACCACCACCACAACCACCATTGCAGACCCAGCTGCAAACCCAGCTTCAGCACCAAGACTCCTCCTTGGTCAACATTAACTGTGGCATAGTTAACAGAAAAAGAGCCCTCTGTGAGGGCTCTGCCTCTCCTCCAGAGACCAAGTTCCAAAGGGTTGCGCTCCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

268

Amino Acids

29.79

Weight (kDa)

6.18

Isoelectric Point (pI)

74.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 21 - 264 1.2e-95 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28140 AT3G44940 AT5G22930
fragaria_vesca FvH4_3g30750 FvH4_3g30750
malus_domestica MD03G1126900.v1.1 MD11G1147500.v1.1
prunus_persica Prupe.6G112200_v2.0.a1
pyrus_communis pycom11g12080
rosa_chinensis RchiOBHm_Chr5g0056941
rosa_laevigata RLG00000035141
rosa_multiflora Rmu_sc0002035.1_g000007
rosa_roxburghii Rroxscaffold_1G00023250
rosa_rugosa Rorug05G0304500
rosa_samantha Rh5AG373900 Rh5BG384900 Rh5CG408200 Rh5DG398300
rosa_wichuraiana Rw5G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 575, 590, 596, 599
AclWI GGATC 1 cut(s) 610
AcoI YGGCCR 1 cut(s) 561
AcuI CTGAAG 2 cut(s) 530, 668
AfaI GTAC 1 cut(s) 95
AfiI CCNNNNNNNGG 7 cut(s) 308, 341, 469, 470, 503, 559, 751
AgsI TTSAA 2 cut(s) 134, 318
AjuI GAANNNNNNNTTGG 2 cut(s) 347, 379
AleI CACNNNNGTG 1 cut(s) 101
AluBI AGCT 9 cut(s) 39, 109, 142, 299, 436, 511, 533, 670, 682
AluI AGCT 9 cut(s) 39, 109, 142, 299, 436, 511, 533, 670, 682
Alw26I GTCTC 5 cut(s) 147, 171, 400, 577, 767
AlwI GGATC 1 cut(s) 610
AlwNI CAGNNNCTG 1 cut(s) 436
AoxI GGCC 3 cut(s) 535, 561, 565
AspLEI GCGC 1 cut(s) 796
AspS9I GGNCC 2 cut(s) 536, 566
AsuHPI GGTGA 1 cut(s) 630
BanII GRGCYC 2 cut(s) 745, 758
BbsI GAAGAC 1 cut(s) 333
BccI CCATC 2 cut(s) 203, 457
BcoDI GTCTC 5 cut(s) 147, 171, 400, 577, 767
BglII AGATCT 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 536, 566
BmrI ACTGGG 1 cut(s) 398
BmsI GCATC 1 cut(s) 330
BmuI ACTGGG 1 cut(s) 398
BpiI GAAGAC 1 cut(s) 333
BplI GAGNNNNNCTC 2 cut(s) 70, 102
BpmI CTGGAG 2 cut(s) 623, 753
BpuEI CTTGAG 2 cut(s) 131, 263
BsaI GGTCTC 1 cut(s) 767
BsaJI CCNNGG 2 cut(s) 55, 702
BsaXI ACNNNNNCTCC 4 cut(s) 240, 270, 680, 710
Bsc4I CCNNNNNNNGG 7 cut(s) 308, 341, 469, 470, 503, 559, 751
Bse118I RCCGGY 1 cut(s) 563
Bse1I ACTGG 1 cut(s) 404
Bse3DI GCAATG 3 cut(s) 491, 539, 656
BseDI CCNNGG 2 cut(s) 55, 702
BseGI GGATG 1 cut(s) 449
BseLI CCNNNNNNNGG 7 cut(s) 308, 341, 469, 470, 503, 559, 751
BseMI GCAATG 3 cut(s) 491, 539, 656
BseMII CTCAG 2 cut(s) 387, 474
BseNI ACTGG 1 cut(s) 404
BseYI CCCAGC 7 cut(s) 39, 267, 279, 429, 463, 666, 678
BshFI GGCC 3 cut(s) 537, 563, 567
BsiSI CCGG 1 cut(s) 564
BslI CCNNNNNNNGG 7 cut(s) 308, 341, 469, 470, 503, 559, 751
BsmAI GTCTC 5 cut(s) 147, 171, 400, 577, 767
BsmBI CGTCTC 1 cut(s) 147
BsnI GGCC 3 cut(s) 537, 563, 567
Bso31I GGTCTC 1 cut(s) 767
Bsp1286I GDGCHC 2 cut(s) 745, 758
Bsp1407I TGTACA 1 cut(s) 93
Bsp143I GATC 3 cut(s) 157, 178, 615
BspACI CCGC 4 cut(s) 575, 590, 596, 599
BspANI GGCC 3 cut(s) 537, 563, 567
BspCNI CTCAG 2 cut(s) 386, 475
BspPI GGATC 1 cut(s) 610
BspTNI GGTCTC 1 cut(s) 767
BsrDI GCAATG 3 cut(s) 491, 539, 656
BsrFI RCCGGY 1 cut(s) 563
BsrGI TGTACA 1 cut(s) 93
BsrI ACTGG 1 cut(s) 404
BssAI RCCGGY 1 cut(s) 563
BssECI CCNNGG 2 cut(s) 55, 702
BssMI GATC 3 cut(s) 157, 178, 615
BssT1I CCWWGG 2 cut(s) 55, 702
Bst4CI ACNGT 2 cut(s) 103, 719
Bst6I CTCTTC 4 cut(s) 33, 66, 334, 403
BstAUI TGTACA 1 cut(s) 93
BstC8I GCNNGC 3 cut(s) 519, 535, 565
BstDEI CTNAG 4 cut(s) 32, 143, 373, 483
BstENI CCTNNNNNAGG 1 cut(s) 749
BstF5I GGATG 1 cut(s) 449
BstHHI GCGC 1 cut(s) 796
BstKTI GATC 3 cut(s) 160, 181, 618
BstMAI GTCTC 5 cut(s) 147, 171, 400, 577, 767
BstMBI GATC 3 cut(s) 157, 178, 615
BstMWI GCNNNNNNNGC 8 cut(s) 15, 280, 289, 430, 487, 598, 667, 679
BstV2I GAAGAC 1 cut(s) 333
BstX2I RGATCY 2 cut(s) 178, 615
BstYI RGATCY 2 cut(s) 178, 615
BsuRI GGCC 3 cut(s) 537, 563, 567
BtsCI GGATG 1 cut(s) 449
BtsI GCAGTG 2 cut(s) 474, 584
BtsIMutI CAGTG 4 cut(s) 108, 474, 584, 799
Cac8I GCNNGC 3 cut(s) 519, 535, 565
CaiI CAGNNNCTG 1 cut(s) 436
CfoI GCGC 1 cut(s) 796
Cfr10I RCCGGY 1 cut(s) 563
Cfr13I GGNCC 2 cut(s) 536, 566
Csp6I GTAC 1 cut(s) 94
CviAII CATG 2 cut(s) 67, 454
CviQI GTAC 1 cut(s) 94
DdeI CTNAG 4 cut(s) 32, 143, 373, 483
DpnI GATC 3 cut(s) 159, 180, 617
DpnII GATC 3 cut(s) 157, 178, 615
EaeI YGGCCR 1 cut(s) 561
Eam1104I CTCTTC 4 cut(s) 33, 66, 334, 403
EarI CTCTTC 4 cut(s) 33, 66, 334, 403
Eco130I CCWWGG 2 cut(s) 55, 702
Eco24I GRGCYC 2 cut(s) 745, 758
Eco31I GGTCTC 1 cut(s) 767
Eco57I CTGAAG 2 cut(s) 530, 668
EcoNI CCTNNNNNAGG 1 cut(s) 749
EcoT14I CCWWGG 2 cut(s) 55, 702
EcoT38I GRGCYC 2 cut(s) 745, 758
ErhI CCWWGG 2 cut(s) 55, 702
Esp3I CGTCTC 1 cut(s) 147
FaeI CATG 2 cut(s) 70, 457
FaiI YATR 3 cut(s) 68, 455, 725
FatI CATG 2 cut(s) 66, 453
FauI CCCGC 1 cut(s) 597
FokI GGATG 1 cut(s) 436
FriOI GRGCYC 2 cut(s) 745, 758
FseI GGCCGGCC 1 cut(s) 567
GlaI GCGC 1 cut(s) 795
GsaI CCCAGC 7 cut(s) 43, 271, 283, 433, 467, 670, 682
GsuI CTGGAG 2 cut(s) 623, 753
HaeIII GGCC 3 cut(s) 537, 563, 567
HapII CCGG 1 cut(s) 564
HhaI GCGC 1 cut(s) 796
Hin1II CATG 2 cut(s) 70, 457
Hin6I GCGC 1 cut(s) 794
HinP1I GCGC 1 cut(s) 794
HincII GTYRAC 2 cut(s) 709, 730
HindII GTYRAC 2 cut(s) 709, 730
HindIII AAGCTT 1 cut(s) 509
HinfI GANTC 5 cut(s) 234, 345, 350, 605, 695
HpaI GTTAAC 1 cut(s) 730
HpaII CCGG 1 cut(s) 564
HphI GGTGA 1 cut(s) 630
Hpy166II GTNNAC 3 cut(s) 96, 709, 730
Hpy188I TCNGA 4 cut(s) 162, 200, 376, 549
Hpy188III TCNNGA 2 cut(s) 134, 770
Hpy8I GTNNAC 3 cut(s) 96, 709, 730
HpyAV CCTTC 2 cut(s) 563, 645
HpyCH4III ACNGT 2 cut(s) 103, 719
HpyCH4V TGCA 4 cut(s) 128, 517, 661, 673
HpyF10VI GCNNNNNNNGC 8 cut(s) 15, 280, 289, 430, 487, 598, 667, 679
HpyF3I CTNAG 4 cut(s) 32, 143, 373, 483
Hsp92II CATG 2 cut(s) 70, 457
HspAI GCGC 1 cut(s) 794
KroI GCCGGC 1 cut(s) 563
KroNI GCCGGC 1 cut(s) 565
KspAI GTTAAC 1 cut(s) 730
Kzo9I GATC 3 cut(s) 157, 178, 615
LmnI GCTCC 5 cut(s) 106, 139, 189, 304, 801
LweI GCATC 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 625
MalI GATC 3 cut(s) 159, 180, 617
MboI GATC 3 cut(s) 157, 178, 615
MboII GAAGA 7 cut(s) 20, 83, 338, 351, 390, 395, 548
MflI RGATCY 2 cut(s) 178, 615
MhlI GDGCHC 2 cut(s) 745, 758
MluCI AATT 1 cut(s) 417
MlyI GAGTC 4 cut(s) 228, 344, 614, 689
MmeI TCCRAC 2 cut(s) 283, 378
MroNI GCCGGC 1 cut(s) 563
MseI TTAA 2 cut(s) 714, 729
MslI CAYNNNNRTG 1 cut(s) 101
MspA1I CMGCKG 4 cut(s) 39, 436, 601, 670
MspI CCGG 1 cut(s) 564
MwoI GCNNNNNNNGC 8 cut(s) 15, 280, 289, 430, 487, 598, 667, 679
NaeI GCCGGC 1 cut(s) 565
NdeII GATC 3 cut(s) 157, 178, 615
NgoMIV GCCGGC 1 cut(s) 563
NlaIII CATG 2 cut(s) 70, 457
NmuCI GTSAC 1 cut(s) 625
OliI CACNNNNGTG 1 cut(s) 101
PdiI GCCGGC 1 cut(s) 565
PfeI GAWTC 1 cut(s) 345
PleI GAGTC 4 cut(s) 228, 344, 613, 689
PpsI GAGTC 4 cut(s) 228, 344, 613, 689
PspFI CCCAGC 7 cut(s) 39, 267, 279, 429, 463, 666, 678
PspPI GGNCC 2 cut(s) 536, 566
PstNI CAGNNNCTG 1 cut(s) 436
PsuI RGATCY 2 cut(s) 178, 615
PvuII CAGCTG 3 cut(s) 39, 436, 670
RigI GGCCGGCC 1 cut(s) 567
RsaI GTAC 1 cut(s) 95
RsaNI GTAC 1 cut(s) 94
RseI CAYNNNNRTG 1 cut(s) 101
SaqAI TTAA 2 cut(s) 714, 729
Sau3AI GATC 3 cut(s) 157, 178, 615
Sau96I GGNCC 2 cut(s) 536, 566
SchI GAGTC 4 cut(s) 228, 344, 614, 689
SduI GDGCHC 2 cut(s) 745, 758
SetI ASST 9 cut(s) 41, 111, 144, 301, 438, 513, 535, 672, 684
SfaNI GCATC 1 cut(s) 330
SmiMI CAYNNNNRTG 1 cut(s) 101
SmlI CTYRAG 2 cut(s) 110, 242
SmoI CTYRAG 2 cut(s) 110, 242
Sse9I AATT 1 cut(s) 417
SsiI CCGC 4 cut(s) 575, 590, 596, 599
StyI CCWWGG 2 cut(s) 55, 702
TaaI ACNGT 2 cut(s) 103, 719
TaqI TCGA 2 cut(s) 324, 348
TasI AATT 1 cut(s) 417
TatI WGTACW 1 cut(s) 93
TauI GCSGC 2 cut(s) 577, 601
TfiI GAWTC 1 cut(s) 345
Tru1I TTAA 2 cut(s) 714, 729
Tru9I TTAA 2 cut(s) 714, 729
TscAI CASTG 3 cut(s) 108, 474, 584
TseFI GTSAC 1 cut(s) 625
Tsp45I GTSAC 1 cut(s) 625
TspDTI ATGAA 3 cut(s) 17, 225, 542
TspRI CASTG 3 cut(s) 108, 474, 584
XagI CCTNNNNNAGG 1 cut(s) 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.