Rw5G035190

Protein of unknown function (DUF1635)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0011938
Physical Location & Seq
Reverse (-)
60794004 .. 60794930
927 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G035190.1

Sequence Viewer

Length: 732 bp
ATGGACAATCAATGCAGCCCTTTACTTAGCAGCTGGGCATACTACTGCCAAGGAAAGAGCATGGATGATTTGAGGCATTCCCTTTTGTATGCAACTGTGGAGCTTGAACAAACAAGGGCTGCAGCACAAGAAGAGCTGAGGAAGAGAGATGAGCAACTGTGCCACCTCAAAGATCTGCTCAACAATGCTATCAGAGAAAAAGATGAGAAATTCCTCCTCCAACAACAACACAATCACACAGCTCCTCTGTCTGGAATTTCAAGCATAGAAGATGAGCCCAGGAGAGGAGGGATTGACTCCAACAATGGTGGAGGGTTTTCTTCCTCAGATTGTGAAGAGAGCATTGTGTCTTCACCAGTAATTGACACAATTCCACCAACCCAGTTGCCATTACCATCATCGCTTCAAAACCAAATTGGGGAATTGGTGCCTGACAAGCCATTGCCTGAGAAAGGCAAGCTTTTACAGGCAGTGAGGAATGCTGGTCCATTGCTCCAGACCCTTCTTTTGGCTGGACCACTCCCTCAATGGAGACACCCACCTCCTCCTCTCGAGTCCTTTGAGATCCCACCTGTCACTATTACTTCACCACCAATACCACTGCCAAAGCCACTGCTCATCCACCAAGACTCCTTAATTAGTGTTAATGGCTGCAACAGGAAGAGGGTTCTTTGTGAAGGCTCTGATTCCCCTAATTCAGAGACCAAATACCAAAGAGTAGTCCACCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1635

Protein Analysis

243

Amino Acids

26.92

Weight (kDa)

5.61

Isoelectric Point (pI)

62.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF1635 PF07795 19 - 240 7e-77 Protein of unknown function (DUF1635)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011938)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G28140 AT3G44940 AT5G22930
fragaria_vesca FvH4_3g30750 FvH4_3g30750
malus_domestica MD03G1126900.v1.1 MD11G1147500.v1.1
prunus_persica Prupe.6G112200_v2.0.a1
pyrus_communis pycom11g12080
rosa_chinensis RchiOBHm_Chr5g0056941
rosa_laevigata RLG00000035141
rosa_multiflora Rmu_sc0002035.1_g000007
rosa_roxburghii Rroxscaffold_1G00023250
rosa_rugosa Rorug05G0304500
rosa_samantha Rh5AG373900 Rh5BG384900 Rh5CG408200 Rh5DG398300
rosa_wichuraiana Rw5G035190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 427
AclWI GGATC 1 cut(s) 559
AcsI RAATTY 2 cut(s) 209, 255
AfiI CCNNNNNNNGG 5 cut(s) 251, 284, 418, 452, 508
AgsI TTSAA 3 cut(s) 107, 261, 407
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 5 cut(s) 33, 103, 136, 242, 460
AluI AGCT 5 cut(s) 33, 103, 136, 242, 460
Alw26I GTCTC 2 cut(s) 526, 695
AlwI GGATC 1 cut(s) 559
Ama87I CYCGRG 1 cut(s) 551
ApeKI GCWGC 5 cut(s) 15, 30, 119, 122, 651
ApoI RAATTY 2 cut(s) 209, 255
ArsI GACNNNNNNTTYG 2 cut(s) 490, 522
AspS9I GGNCC 2 cut(s) 485, 515
AsuHPI GGTGA 2 cut(s) 345, 579
AvaI CYCGRG 1 cut(s) 551
AvaII GGWCC 2 cut(s) 485, 515
BanI GGYRCC 1 cut(s) 427
BanII GRGCYC 1 cut(s) 279
BbsI GAAGAC 1 cut(s) 342
BbvCI CCTCAGC 1 cut(s) 137
BbvI GCAGC 5 cut(s) 27, 42, 106, 134, 638
BccI CCATC 1 cut(s) 403
BciT130I CCWGG 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 526, 695
BfmI CTRYAG 1 cut(s) 120
BglII AGATCT 1 cut(s) 172
BisI GCNGC 5 cut(s) 16, 31, 120, 123, 652
BlsI GCNGC 5 cut(s) 17, 32, 121, 124, 653
Bme1390I CCNGG 1 cut(s) 280
Bme18I GGWCC 2 cut(s) 485, 515
BmeT110I CYCGRG 1 cut(s) 551
BmgT120I GGNCC 2 cut(s) 485, 515
BmiI GGNNCC 1 cut(s) 429
BmrFI CCNGG 1 cut(s) 280
BmrI ACTGGG 1 cut(s) 376
BmuI ACTGGG 1 cut(s) 376
BpiI GAAGAC 1 cut(s) 342
BpmI CTGGAG 1 cut(s) 479
Bpu10I CCTNAGC 1 cut(s) 137
BsaI GGTCTC 1 cut(s) 695
BsaJI CCNNGG 2 cut(s) 49, 278
BsaXI ACNNNNNCTCC 2 cut(s) 614, 644
Bsc4I CCNNNNNNNGG 5 cut(s) 251, 284, 418, 452, 508
Bse1I ACTGG 2 cut(s) 356, 382
Bse3DI GCAATG 2 cut(s) 440, 488
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 2 cut(s) 49, 278
BseGI GGATG 2 cut(s) 70, 618
BseLI CCNNNNNNNGG 5 cut(s) 251, 284, 418, 452, 508
BseMI GCAATG 2 cut(s) 440, 488
BseMII CTCAG 3 cut(s) 128, 339, 438
BseNI ACTGG 2 cut(s) 356, 382
BseRI GAGGAG 5 cut(s) 206, 234, 300, 534, 537
BseXI GCAGC 5 cut(s) 27, 42, 106, 134, 638
BseYI CCCAGC 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 427
BsiHKCI CYCGRG 1 cut(s) 551
BslI CCNNNNNNNGG 5 cut(s) 251, 284, 418, 452, 508
BsmAI GTCTC 2 cut(s) 526, 695
BsmI GAATGC 2 cut(s) 76, 484
Bso31I GGTCTC 1 cut(s) 695
BsoBI CYCGRG 1 cut(s) 551
Bsp1286I GDGCHC 1 cut(s) 279
Bsp143I GATC 2 cut(s) 172, 564
BspCNI CTCAG 3 cut(s) 129, 338, 439
BspLI GGNNCC 1 cut(s) 429
BspMAI CTGCAG 1 cut(s) 124
BspPI GGATC 1 cut(s) 559
BspQI GCTCTTC 1 cut(s) 126
BspT107I GGYRCC 1 cut(s) 427
BspTNI GGTCTC 1 cut(s) 695
BsrDI GCAATG 2 cut(s) 440, 488
BsrI ACTGG 2 cut(s) 356, 382
BssECI CCNNGG 2 cut(s) 49, 278
BssMI GATC 2 cut(s) 172, 564
BssT1I CCWWGG 1 cut(s) 49
Bst2UI CCWGG 1 cut(s) 280
Bst4CI ACNGT 2 cut(s) 97, 159
Bst6I CTCTTC 4 cut(s) 126, 137, 330, 656
BstC8I GCNNGC 1 cut(s) 458
BstDEI CTNAG 4 cut(s) 26, 137, 325, 447
BstENI CCTNNNNNAGG 1 cut(s) 450
BstF5I GGATG 2 cut(s) 70, 618
BstKTI GATC 2 cut(s) 175, 567
BstMAI GTCTC 2 cut(s) 526, 695
BstMBI GATC 2 cut(s) 172, 564
BstMWI GCNNNNNNNGC 1 cut(s) 436
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 278
BstSFI CTRYAG 1 cut(s) 120
BstV1I GCAGC 5 cut(s) 27, 42, 106, 134, 638
BstV2I GAAGAC 1 cut(s) 342
BstX2I RGATCY 2 cut(s) 172, 564
BstYI RGATCY 2 cut(s) 172, 564
BtgZI GCGATG 1 cut(s) 384
BtsCI GGATG 2 cut(s) 70, 618
BtsI GCAGTG 3 cut(s) 477, 599, 611
BtsIMutI CAGTG 4 cut(s) 477, 599, 611, 727
Cac8I GCNNGC 1 cut(s) 458
Cfr13I GGNCC 2 cut(s) 485, 515
CspCI CAANNNNNGTGG 2 cut(s) 289, 324
CviAII CATG 1 cut(s) 61
DdeI CTNAG 4 cut(s) 26, 137, 325, 447
DpnI GATC 2 cut(s) 174, 566
DpnII GATC 2 cut(s) 172, 564
Eam1104I CTCTTC 4 cut(s) 126, 137, 330, 656
EarI CTCTTC 4 cut(s) 126, 137, 330, 656
Eco130I CCWWGG 1 cut(s) 49
Eco24I GRGCYC 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 695
Eco47I GGWCC 2 cut(s) 485, 515
Eco88I CYCGRG 1 cut(s) 551
EcoNI CCTNNNNNAGG 1 cut(s) 450
EcoRII CCWGG 1 cut(s) 278
EcoT14I CCWWGG 1 cut(s) 49
EcoT38I GRGCYC 1 cut(s) 279
ErhI CCWWGG 1 cut(s) 49
FaeI CATG 1 cut(s) 64
FaiI YATR 4 cut(s) 40, 62, 90, 266
FalI AAGNNNNNCTT 2 cut(s) 444, 476
FatI CATG 1 cut(s) 60
Fnu4HI GCNGC 5 cut(s) 16, 31, 120, 123, 652
FokI GGATG 2 cut(s) 77, 605
FriOI GRGCYC 1 cut(s) 279
Fsp4HI GCNGC 5 cut(s) 16, 31, 120, 123, 652
GluI GCNGC 5 cut(s) 16, 31, 120, 123, 652
GsaI CCCAGC 1 cut(s) 37
GsuI CTGGAG 1 cut(s) 479
Hin1II CATG 1 cut(s) 64
HindIII AAGCTT 1 cut(s) 458
HinfI GANTC 4 cut(s) 296, 554, 629, 686
HphI GGTGA 2 cut(s) 345, 579
Hpy166II GTNNAC 1 cut(s) 724
Hpy188I TCNGA 4 cut(s) 194, 328, 685, 700
Hpy188III TCNNGA 3 cut(s) 252, 496, 551
Hpy8I GTNNAC 1 cut(s) 724
HpyAV CCTTC 2 cut(s) 512, 671
HpyCH4III ACNGT 2 cut(s) 97, 159
HpyCH4V TGCA 4 cut(s) 15, 92, 122, 654
HpyF10VI GCNNNNNNNGC 1 cut(s) 436
HpyF3I CTNAG 4 cut(s) 26, 137, 325, 447
Hsp92II CATG 1 cut(s) 64
Kzo9I GATC 2 cut(s) 172, 564
LguI GCTCTTC 1 cut(s) 126
LmnI GCTCC 3 cut(s) 100, 247, 498
Lsp1109I GCAGC 5 cut(s) 27, 42, 106, 134, 638
MaeIII GTNAC 1 cut(s) 574
MalI GATC 2 cut(s) 174, 566
MboI GATC 2 cut(s) 172, 564
MboII GAAGA 7 cut(s) 143, 154, 281, 312, 342, 347, 673
MflI RGATCY 2 cut(s) 172, 564
MhlI GDGCHC 1 cut(s) 279
MluCI AATT 8 cut(s) 209, 255, 360, 369, 414, 422, 636, 694
MlyI GAGTC 3 cut(s) 290, 563, 623
MmeI TCCRAC 2 cut(s) 244, 324
MseI TTAA 2 cut(s) 635, 645
MspA1I CMGCKG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 280
Mva1269I GAATGC 2 cut(s) 76, 484
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 436
NdeII GATC 2 cut(s) 172, 564
NlaIII CATG 1 cut(s) 64
NlaIV GGNNCC 1 cut(s) 429
NmuCI GTSAC 1 cut(s) 574
PaeR7I CTCGAG 1 cut(s) 551
PciSI GCTCTTC 1 cut(s) 126
PctI GAATGC 2 cut(s) 76, 484
PfeI GAWTC 1 cut(s) 686
PkrI GCNGC 5 cut(s) 17, 32, 121, 124, 653
PleI GAGTC 3 cut(s) 290, 562, 623
PpsI GAGTC 3 cut(s) 290, 562, 623
Psp6I CCWGG 1 cut(s) 278
PspFI CCCAGC 1 cut(s) 33
PspGI CCWGG 1 cut(s) 278
PspN4I GGNNCC 1 cut(s) 429
PspPI GGNCC 2 cut(s) 485, 515
PstI CTGCAG 1 cut(s) 124
PsuI RGATCY 2 cut(s) 172, 564
PvuII CAGCTG 1 cut(s) 33
SapI GCTCTTC 1 cut(s) 126
SaqAI TTAA 2 cut(s) 635, 645
SatI GCNGC 5 cut(s) 16, 31, 120, 123, 652
Sau3AI GATC 2 cut(s) 172, 564
Sau96I GGNCC 2 cut(s) 485, 515
SchI GAGTC 3 cut(s) 290, 563, 623
ScrFI CCNGG 1 cut(s) 280
SduI GDGCHC 1 cut(s) 279
SetI ASST 8 cut(s) 35, 105, 138, 168, 244, 462, 544, 574
SfcI CTRYAG 1 cut(s) 120
Sfr274I CTCGAG 1 cut(s) 551
SinI GGWCC 2 cut(s) 485, 515
SlaI CTCGAG 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 551
SmoI CTYRAG 1 cut(s) 551
Sse9I AATT 8 cut(s) 209, 255, 360, 369, 414, 422, 636, 694
StyD4I CCNGG 1 cut(s) 278
StyI CCWWGG 1 cut(s) 49
TaaI ACNGT 2 cut(s) 97, 159
TaqI TCGA 1 cut(s) 552
TasI AATT 8 cut(s) 209, 255, 360, 369, 414, 422, 636, 694
TfiI GAWTC 1 cut(s) 686
Tru1I TTAA 2 cut(s) 635, 645
Tru9I TTAA 2 cut(s) 635, 645
TscAI CASTG 3 cut(s) 477, 606, 618
TseFI GTSAC 1 cut(s) 574
TseI GCWGC 5 cut(s) 15, 30, 119, 122, 651
Tsp45I GTSAC 1 cut(s) 574
TspRI CASTG 3 cut(s) 477, 606, 618
VpaK11BI GGWCC 2 cut(s) 485, 515
XagI CCTNNNNNAGG 1 cut(s) 450
XapI RAATTY 2 cut(s) 209, 255
XcmI CCANNNNNNNNNTGG 1 cut(s) 525
XhoI CTCGAG 1 cut(s) 551
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.