Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003541

Physical Location & Seq

Genomic Coordinates Reverse (-)

12235875 .. 12239146

Gene Structure 3272 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28560.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCAAACAAACTCATCGGAGAAATGGGTCTTCACACCAAAATCTCAAACATCTTCGCTGCAAGAAACATCATCACCGCCAAGGATGCATTATCAATGACGGAATTTGAACTAATGGAGCTGTTAGATGTTGGAATGAAAGAGATAAGATCAGCAATTTCATTCATCAGTGAAGCTACTTCTCCACCATGTCAATCTGCTCGATCTTTACTGGAGAAGAAGGTCGAAAACGAACATTTATCAGGTCATCTTCCTACACATTTGAAGGGGTTAGATGATACCTTGTGTGGTGGGATACCTTTTGGTGTTCTTACTGAGTTAGTTGGTCCTCCTGGTATTGGTAAATCACAGTTTTGCATGAAACTTGCGTTATCAGCTTCGTTTCCAGTAGCTTATGGAGGATTAGATGGTCGTGTGATATACATAGATGTGGAATCCAAGTTTAGTTCAAGAAGGGTGATAGAGATGGGACTGGAAAGCTTTCCGGAAGTGTTTCATCTTAAAGGAATGGCACAAGAGATGGCTGGAAGAATCCTTGTTTTGCGTCCAACATCTTTAGCTAACTTTACTGAAAGTATACAAGAACTCAAGAATTCAATTCTTCAAAACCAAGTAAAGCTTCTAGTGATTGATAGTATGACAGCTCTTCTTTCAGGCGAAAACAAACCAGGAGCTCAGAGACAACCTCAGTTGGGTTGGCATATCTCTTTCTTAAAATCGCTTGCTGAATTTTCACGGATTCCTATAGTGGTGACTAATCAAGTTAGATCTCAAAACCGCGATGAAACTAGTCAGTATTCTTTCCAAGCTAAAGTTAAAGATGAATTCAAAGACAACACAAAGACATATGATTCTCACCTTGTTGCTGCATTGGGGATTAACTGGGCTCATGCTGTAACCATCCGACTGGTCCTTGAAGCCAAGTCAGGTCAGAGAATCATTAAGGTGGCAAAATCTCCTATGTCGCCTCCTTTAGCCTTCCCGTTCCATATAACATCAGCTGGGATTTCATTGCTGAGCGACAACGGGACTGAACTGAAAGGTCCAGGAATCAACACCATTCATGCTCGAGGTATAGTTGATCCCGATTATGTCGCTTTATTTCGCACATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

371

Amino Acids

40.66

Weight (kDa)

8.32

Isoelectric Point (pI)

38.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHH_XRCC3_RpoA	PF26169	8 - 59	3e-17	XRCC3/RpoA-like, helix-hairpin-helix domain
DnaB_C	PF03796	84 - 259	2.9e-06	DnaB-like helicase C terminal domain
ATPase	PF06745	85 - 229	8.8e-09	KaiC
Rad51	PF08423	86 - 337	1.4e-29	Rad51
AAA_25	PF13481	95 - 223	2.2e-09	AAA domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28560 AT2G28560 AT2G28560 AT2G28560 AT2G28560 AT2G28560
fragaria_vesca	FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990
malus_domestica	MD11G1120900.v1.1
prunus_persica	Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1
pyrus_communis	pycom11g10220
rosa_chinensis	RchiOBHm_Chr5g0061521
rosa_laevigata	RLG00000035484
rosa_multiflora	Rmu_co8481717.1_g000001 Rmu_sc0006720.1_g000001 Rmu_sc0010824.1_g000011
rosa_roxburghii	Rroxscaffold_1G00019150
rosa_rugosa	Rorug05G0341400 Rorug05G0341500 Rorug05G0341600 Rorug05G0341700
rosa_samantha	Rh5AG403500 Rh5BG415700 Rh5CG440400 Rh5DG430200
rosa_wichuraiana	Rw5G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	577
AccII	CGCG	1 cut(s)	780
AccIII	TCCGGA	1 cut(s)	484
AciI	CCGC	2 cut(s)	78, 778
AclWI	GGATC	1 cut(s)	1076
AcsI	RAATTY	4 cut(s)	104, 592, 728, 824
AfiI	CCNNNNNNNGG	2 cut(s)	338, 692
AgsI	TTSAA	7 cut(s)	110, 265, 450, 597, 605, 829, 917
AhlI	ACTAGT	1 cut(s)	788
AjnI	CCWGG	3 cut(s)	331, 667, 1045
AjuI	GAANNNNNNNTTGG	2 cut(s)	603, 635
Alw21I	GWGCWC	1 cut(s)	676
Alw26I	GTCTC	1 cut(s)	673
AlwI	GGATC	1 cut(s)	1076
Ama87I	CYCGRG	1 cut(s)	1068
Aor13HI	TCCGGA	1 cut(s)	484
ApeKI	GCWGC	2 cut(s)	59, 866
ApoI	RAATTY	4 cut(s)	104, 592, 728, 824
Asp700I	GAANNNNTTC	2 cut(s)	480, 492
AspS9I	GGNCC	3 cut(s)	326, 910, 1043
AsuHPI	GGTGA	4 cut(s)	67, 469, 763, 848
AvaI	CYCGRG	1 cut(s)	1068
AvaII	GGWCC	3 cut(s)	326, 910, 1043
BanII	GRGCYC	2 cut(s)	676, 889
BbsI	GAAGAC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	676
BbvI	GCAGC	2 cut(s)	46, 853
BccI	CCATC	4 cut(s)	401, 460, 514, 908
BciT130I	CCWGG	3 cut(s)	333, 669, 1047
BciVI	GTATCC	1 cut(s)	288
BcoDI	GTCTC	1 cut(s)	673
BcuI	ACTAGT	1 cut(s)	788
BfaI	CTAG	2 cut(s)	623, 789
BfmI	CTRYAG	1 cut(s)	744
BfuI	GTATCC	1 cut(s)	288
BglII	AGATCT	1 cut(s)	767
BisI	GCNGC	2 cut(s)	60, 867
BlpI	GCTNAGC	1 cut(s)	1016
BlsI	GCNGC	2 cut(s)	61, 868
Bme1390I	CCNGG	3 cut(s)	333, 669, 1047
Bme18I	GGWCC	3 cut(s)	326, 910, 1043
BmeT110I	CYCGRG	1 cut(s)	1068
BmgT120I	GGNCC	3 cut(s)	326, 910, 1043
BmrFI	CCNGG	3 cut(s)	333, 669, 1047
BmrI	ACTGGG	1 cut(s)	892
BmsI	GCATC	1 cut(s)	76
BmuI	ACTGGG	1 cut(s)	892
BpiI	GAAGAC	1 cut(s)	23
BplI	GAGNNNNNCTC	2 cut(s)	670, 702
BpmI	CTGGAG	1 cut(s)	233
Bpu1102I	GCTNAGC	1 cut(s)	1016
BpuEI	CTTGAG	1 cut(s)	572
BsaJI	CCNNGG	1 cut(s)	81
BsaWI	WCCGGW	1 cut(s)	484
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 692
Bse1I	ACTGG	5 cut(s)	216, 386, 477, 887, 912
Bse3DI	GCAATG	1 cut(s)	1010
BseAI	TCCGGA	1 cut(s)	484
BseBI	CCWGG	3 cut(s)	333, 669, 1047
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	2 cut(s)	91, 900
BseLI	CCNNNNNNNGG	2 cut(s)	338, 692
BseMI	GCAATG	1 cut(s)	1010
BseMII	CTCAG	4 cut(s)	306, 689, 701, 1007
BseNI	ACTGG	5 cut(s)	216, 386, 477, 887, 912
BseXI	GCAGC	2 cut(s)	46, 853
BseYI	CCCAGC	1 cut(s)	1001
Bsh1236I	CGCG	1 cut(s)	780
BsiHKAI	GWGCWC	1 cut(s)	676
BsiHKCI	CYCGRG	1 cut(s)	1068
BsiSI	CCGG	1 cut(s)	485
BslFI	GGGAC	2 cut(s)	483, 1042
BslI	CCNNNNNNNGG	2 cut(s)	338, 692
BsmAI	GTCTC	1 cut(s)	673
BsmFI	GGGAC	2 cut(s)	483, 1042
BsoBI	CYCGRG	1 cut(s)	1068
Bsp1286I	GDGCHC	2 cut(s)	676, 889
Bsp13I	TCCGGA	1 cut(s)	484
Bsp143I	GATC	4 cut(s)	149, 203, 767, 1081
Bsp1720I	GCTNAGC	1 cut(s)	1016
BspACI	CCGC	2 cut(s)	78, 778
BspCNI	CTCAG	4 cut(s)	307, 688, 700, 1008
BspEI	TCCGGA	1 cut(s)	484
BspFNI	CGCG	1 cut(s)	780
BspPI	GGATC	1 cut(s)	1076
BspQI	GCTCTTC	1 cut(s)	651
BsrDI	GCAATG	1 cut(s)	1010
BsrI	ACTGG	5 cut(s)	216, 386, 477, 887, 912
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	4 cut(s)	149, 203, 767, 1081
BssNAI	GTATAC	1 cut(s)	578
BssT1I	CCWWGG	1 cut(s)	81
Bst1107I	GTATAC	1 cut(s)	578
Bst2UI	CCWGG	3 cut(s)	333, 669, 1047
Bst4CI	ACNGT	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	651
BstC8I	GCNNGC	1 cut(s)	723
BstDEI	CTNAG	4 cut(s)	315, 675, 687, 1016
BstF5I	GGATG	2 cut(s)	91, 900
BstFNI	CGCG	1 cut(s)	780
BstKTI	GATC	4 cut(s)	152, 206, 770, 1084
BstMAI	GTCTC	1 cut(s)	673
BstMBI	GATC	4 cut(s)	149, 203, 767, 1081
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 374
BstNI	CCWGG	3 cut(s)	333, 669, 1047
BstSCI	CCNGG	3 cut(s)	331, 667, 1045
BstSFI	CTRYAG	1 cut(s)	744
BstUI	CGCG	1 cut(s)	780
BstV1I	GCAGC	2 cut(s)	46, 853
BstV2I	GAAGAC	1 cut(s)	23
BstX2I	RGATCY	1 cut(s)	767
BstXI	CCANNNNNNTGG	1 cut(s)	907
BstYI	RGATCY	1 cut(s)	767
BstZ17I	GTATAC	1 cut(s)	578
BsuI	GTATCC	1 cut(s)	288
BtgZI	GCGATG	1 cut(s)	795
BtsCI	GGATG	2 cut(s)	91, 900
BtsIMutI	CAGTG	1 cut(s)	175
Cac8I	GCNNGC	1 cut(s)	723
Cfr13I	GGNCC	3 cut(s)	326, 910, 1043
CseI	GACGC	1 cut(s)	533
CviAII	CATG	4 cut(s)	189, 358, 890, 1064
DdeI	CTNAG	4 cut(s)	315, 675, 687, 1016
DpnI	GATC	4 cut(s)	151, 205, 769, 1083
DpnII	GATC	4 cut(s)	149, 203, 767, 1081
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
Ecl136II	GAGCTC	1 cut(s)	674
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	2 cut(s)	676, 889
Eco47I	GGWCC	3 cut(s)	326, 910, 1043
Eco53kI	GAGCTC	1 cut(s)	674
Eco88I	CYCGRG	1 cut(s)	1068
EcoICRI	GAGCTC	1 cut(s)	674
EcoRI	GAATTC	2 cut(s)	592, 824
EcoRII	CCWGG	3 cut(s)	331, 667, 1045
EcoT14I	CCWWGG	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	91
EcoT38I	GRGCYC	2 cut(s)	676, 889
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	4 cut(s)	192, 361, 893, 1067
FalI	AAGNNNNNCTT	2 cut(s)	603, 635
FaqI	GGGAC	2 cut(s)	483, 1042
FatI	CATG	4 cut(s)	188, 357, 889, 1063
FauNDI	CATATG	1 cut(s)	847
FblI	GTMKAC	1 cut(s)	577
Fnu4HI	GCNGC	2 cut(s)	60, 867
FokI	GGATG	2 cut(s)	98, 887
FriOI	GRGCYC	2 cut(s)	676, 889
Fsp4HI	GCNGC	2 cut(s)	60, 867
FspBI	CTAG	2 cut(s)	623, 789
GluI	GCNGC	2 cut(s)	60, 867
GsaI	CCCAGC	1 cut(s)	1005
GsuI	CTGGAG	1 cut(s)	233
HapII	CCGG	1 cut(s)	485
HgaI	GACGC	1 cut(s)	533
Hin1II	CATG	4 cut(s)	192, 361, 893, 1067
HindIII	AAGCTT	2 cut(s)	478, 617
HinfI	GANTC	6 cut(s)	434, 531, 739, 851, 936, 1050
HpaII	CCGG	1 cut(s)	485
HphI	GGTGA	4 cut(s)	67, 469, 763, 848
Hpy166II	GTNNAC	1 cut(s)	578
Hpy188I	TCNGA	4 cut(s)	20, 678, 905, 933
Hpy188III	TCNNGA	4 cut(s)	450, 485, 589, 1085
Hpy8I	GTNNAC	1 cut(s)	578
HpyAV	CCTTC	4 cut(s)	214, 259, 447, 988
HpyCH4III	ACNGT	1 cut(s)	351
HpyCH4V	TGCA	4 cut(s)	62, 89, 357, 869
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 374
HpyF3I	CTNAG	4 cut(s)	315, 675, 687, 1016
Hsp92II	CATG	4 cut(s)	192, 361, 893, 1067
Kpn2I	TCCGGA	1 cut(s)	484
Kzo9I	GATC	4 cut(s)	149, 203, 767, 1081
LguI	GCTCTTC	1 cut(s)	651
LmnI	GCTCC	2 cut(s)	118, 671
Lsp1109I	GCAGC	2 cut(s)	46, 853
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	2 cut(s)	623, 789
MaeIII	GTNAC	2 cut(s)	751, 895
MalI	GATC	4 cut(s)	151, 205, 769, 1083
MboI	GATC	4 cut(s)	149, 203, 767, 1081
MboII	GAAGA	7 cut(s)	23, 46, 229, 242, 540, 593, 638
MflI	RGATCY	1 cut(s)	767
MhlI	GDGCHC	2 cut(s)	676, 889
MluCI	AATT	6 cut(s)	104, 156, 592, 597, 728, 824
MmeI	TCCRAC	3 cut(s)	112, 572, 928
MnlI	CCTC	5 cut(s)	339, 392, 696, 978, 1064
Mph1103I	ATGCAT	1 cut(s)	91
MroI	TCCGGA	1 cut(s)	484
MroXI	GAANNNNTTC	2 cut(s)	480, 492
MseI	TTAA	5 cut(s)	501, 713, 816, 879, 942
MslI	CAYNNNNRTG	2 cut(s)	428, 944
MspA1I	CMGCKG	1 cut(s)	1001
MspI	CCGG	1 cut(s)	485
MspR9I	CCNGG	3 cut(s)	333, 669, 1047
MvaI	CCWGG	3 cut(s)	333, 669, 1047
MvnI	CGCG	1 cut(s)	780
MwoI	GCNNNNNNNGC	2 cut(s)	86, 374
NdeI	CATATG	1 cut(s)	847
NdeII	GATC	4 cut(s)	149, 203, 767, 1081
NlaIII	CATG	4 cut(s)	192, 361, 893, 1067
NmuCI	GTSAC	1 cut(s)	751
NsiI	ATGCAT	1 cut(s)	91
PaeR7I	CTCGAG	1 cut(s)	1068
PciSI	GCTCTTC	1 cut(s)	651
PdmI	GAANNNNTTC	2 cut(s)	480, 492
PfeI	GAWTC	6 cut(s)	434, 531, 739, 851, 936, 1050
PfoI	TCCNGGA	1 cut(s)	1045
PkrI	GCNGC	2 cut(s)	61, 868
Psp124BI	GAGCTC	1 cut(s)	676
Psp6I	CCWGG	3 cut(s)	331, 667, 1045
PspFI	CCCAGC	1 cut(s)	1001
PspGI	CCWGG	3 cut(s)	331, 667, 1045
PspPI	GGNCC	3 cut(s)	326, 910, 1043
PspXI	VCTCGAGB	1 cut(s)	1068
PsuI	RGATCY	1 cut(s)	767
PvuII	CAGCTG	1 cut(s)	1001
RseI	CAYNNNNRTG	2 cut(s)	428, 944
SacI	GAGCTC	1 cut(s)	676
SapI	GCTCTTC	1 cut(s)	651
SaqAI	TTAA	5 cut(s)	501, 713, 816, 879, 942
SatI	GCNGC	2 cut(s)	60, 867
Sau3AI	GATC	4 cut(s)	149, 203, 767, 1081
Sau96I	GGNCC	3 cut(s)	326, 910, 1043
ScrFI	CCNGG	3 cut(s)	333, 669, 1047
SduI	GDGCHC	2 cut(s)	676, 889
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	744
Sfr274I	CTCGAG	1 cut(s)	1068
SinI	GGWCC	3 cut(s)	326, 910, 1043
SlaI	CTCGAG	1 cut(s)	1068
SmiMI	CAYNNNNRTG	2 cut(s)	428, 944
SmlI	CTYRAG	2 cut(s)	587, 1068
SmoI	CTYRAG	2 cut(s)	587, 1068
SpeI	ACTAGT	1 cut(s)	788
Sse9I	AATT	6 cut(s)	104, 156, 592, 597, 728, 824
SsiI	CCGC	2 cut(s)	78, 778
SspMI	CTAG	2 cut(s)	623, 789
SstI	GAGCTC	1 cut(s)	676
StyD4I	CCNGG	3 cut(s)	331, 667, 1045
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	351
TaqI	TCGA	3 cut(s)	202, 225, 1069
TasI	AATT	6 cut(s)	104, 156, 592, 597, 728, 824
TfiI	GAWTC	6 cut(s)	434, 531, 739, 851, 936, 1050
Tru1I	TTAA	5 cut(s)	501, 713, 816, 879, 942
Tru9I	TTAA	5 cut(s)	501, 713, 816, 879, 942
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	751
TseI	GCWGC	2 cut(s)	59, 866
Tsp45I	GTSAC	1 cut(s)	751
TspDTI	ATGAA	9 cut(s)	150, 152, 154, 374, 485, 798, 837, 999, 1052
TspGWI	ACGGA	2 cut(s)	116, 751
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	3 cut(s)	326, 910, 1043
XapI	RAATTY	4 cut(s)	104, 592, 728, 824
XhoI	CTCGAG	1 cut(s)	1068
XmiI	GTMKAC	1 cut(s)	577
XmnI	GAANNNNTTC	2 cut(s)	480, 492
XspI	CTAG	2 cut(s)	623, 789
Zsp2I	ATGCAT	1 cut(s)	91

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.