Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8481717.1

Orthogroup ID

OG0003541

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 923

Gene Structure 923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8481717.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 511 bp

tccaatggggacggggacggggaatccccagtatcttattactgggattagggagggtatggggatgaagaatgaagtcggggtttctcatttggcgggaagaaagcttcggagcttgagagagaaaatggcgaacaagctcatcaaccagatgggccttcccaaatctatcgccaacgtcttcgcagctcgtaacatcagcaccgccaaggaagctttgtctttgaccgaattcgaattaatggaagtgctagatgtgagtatggcacaagtcacgtctgcgatagctcgcatcagtgaaatcacatgtccaccctaccaaactgttctctctctaatggagcaaagagttcaaatggagcacatgggtggtcacctttcgacgcagctcaaagggctagaccaggccttatgcggtggtatcccatttggggttttgactgagctggttgggcctgctgggattggcaaaacacaggtacatttcgttcgccaatctgatcgtgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

169

Amino Acids

18.27

Weight (kDa)

8.76

Isoelectric Point (pI)

27.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28560 AT2G28560 AT2G28560 AT2G28560 AT2G28560 AT2G28560
fragaria_vesca	FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990
malus_domestica	MD11G1120900.v1.1
prunus_persica	Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1
pyrus_communis	pycom11g10220
rosa_chinensis	RchiOBHm_Chr5g0061521
rosa_laevigata	RLG00000035484
rosa_multiflora	Rmu_co8481717.1_g000001 Rmu_sc0006720.1_g000001 Rmu_sc0010824.1_g000011
rosa_roxburghii	Rroxscaffold_1G00019150
rosa_rugosa	Rorug05G0341400 Rorug05G0341500 Rorug05G0341600 Rorug05G0341700
rosa_samantha	Rh5AG403500 Rh5BG415700 Rh5CG440400 Rh5DG430200
rosa_wichuraiana	Rw5G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	96, 205, 415
AcsI	RAATTY	1 cut(s)	231
AfaI	GTAC	1 cut(s)	481
AfiI	CCNNNNNNNGG	1 cut(s)	431
AflIII	ACRYGT	1 cut(s)	306
AgsI	TTSAA	1 cut(s)	354
AjiI	CACGTC	1 cut(s)	277
AjnI	CCWGG	1 cut(s)	403
AleI	CACNNNNGTG	1 cut(s)	367
AluBI	AGCT	8 cut(s)	107, 115, 140, 189, 216, 288, 389, 446
AluI	AGCT	8 cut(s)	107, 115, 140, 189, 216, 288, 389, 446
Alw21I	GWGCWC	1 cut(s)	364
AoxI	GGCC	3 cut(s)	155, 406, 453
ApeKI	GCWGC	2 cut(s)	186, 386
ApoI	RAATTY	1 cut(s)	231
AseI	ATTAAT	1 cut(s)	240
AspS9I	GGNCC	2 cut(s)	155, 453
AsuHPI	GGTGA	1 cut(s)	366
AsuII	TTCGAA	1 cut(s)	235
BbsI	GAAGAC	1 cut(s)	173
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	2 cut(s)	198, 398
BccI	CCATC	1 cut(s)	146
BciT130I	CCWGG	1 cut(s)	405
BciVI	GTATCC	1 cut(s)	432
BfaI	CTAG	2 cut(s)	252, 399
BfuI	GTATCC	1 cut(s)	432
BisI	GCNGC	2 cut(s)	187, 387
BlsI	GCNGC	2 cut(s)	188, 388
Bme1390I	CCNGG	1 cut(s)	405
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	155, 453
BmrFI	CCNGG	1 cut(s)	405
BmrI	ACTGGG	2 cut(s)	23, 52
BmsI	GCATC	1 cut(s)	301
BmuI	ACTGGG	2 cut(s)	23, 52
BpiI	GAAGAC	1 cut(s)	173
Bpu14I	TTCGAA	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	208
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	2 cut(s)	29, 47
BseBI	CCWGG	1 cut(s)	405
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMII	CTCAG	1 cut(s)	433
BseNI	ACTGG	2 cut(s)	29, 47
BseXI	GCAGC	2 cut(s)	198, 398
BseYI	CCCAGC	1 cut(s)	459
BshFI	GGCC	3 cut(s)	157, 408, 455
BsiHKAI	GWGCWC	1 cut(s)	364
BslFI	GGGAC	2 cut(s)	23, 29
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmFI	GGGAC	2 cut(s)	23, 29
BsnI	GGCC	3 cut(s)	157, 408, 455
Bsp119I	TTCGAA	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	1 cut(s)	500
BspACI	CCGC	3 cut(s)	96, 205, 415
BspANI	GGCC	3 cut(s)	157, 408, 455
BspCNI	CTCAG	1 cut(s)	434
BspT104I	TTCGAA	1 cut(s)	235
BsrI	ACTGG	2 cut(s)	29, 47
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	1 cut(s)	500
BssT1I	CCWWGG	1 cut(s)	208
Bst2UI	CCWGG	1 cut(s)	405
Bst4CI	ACNGT	1 cut(s)	326
BstBI	TTCGAA	1 cut(s)	235
BstC8I	GCNNGC	2 cut(s)	290, 457
BstDEI	CTNAG	1 cut(s)	442
BstEII	GGTNACC	1 cut(s)	372
BstF5I	GGATG	1 cut(s)	70
BstKTI	GATC	1 cut(s)	503
BstMBI	GATC	1 cut(s)	500
BstMWI	GCNNNNNNNGC	3 cut(s)	213, 395, 452
BstNI	CCWGG	1 cut(s)	405
BstNSI	RCATGY	1 cut(s)	310
BstPI	GGTNACC	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	403
BstV1I	GCAGC	2 cut(s)	198, 398
BstV2I	GAAGAC	1 cut(s)	173
BsuI	GTATCC	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	157, 408, 455
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	1 cut(s)	70
BtsIMutI	CAGTG	1 cut(s)	302
Cac8I	GCNNGC	2 cut(s)	290, 457
Cfr13I	GGNCC	2 cut(s)	155, 453
CseI	GACGC	1 cut(s)	392
Csp6I	GTAC	1 cut(s)	480
CviAII	CATG	2 cut(s)	307, 365
CviQI	GTAC	1 cut(s)	480
DdeI	CTNAG	1 cut(s)	442
DpnI	GATC	1 cut(s)	502
DpnII	GATC	1 cut(s)	500
Eco130I	CCWWGG	1 cut(s)	208
Eco147I	AGGCCT	1 cut(s)	408
Eco91I	GGTNACC	1 cut(s)	372
EcoO65I	GGTNACC	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	403
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	2 cut(s)	310, 368
FaiI	YATR	5 cut(s)	60, 264, 308, 366, 413
FaqI	GGGAC	2 cut(s)	23, 29
FatI	CATG	2 cut(s)	306, 364
FauI	CCCGC	1 cut(s)	89
Fnu4HI	GCNGC	2 cut(s)	187, 387
FokI	GGATG	1 cut(s)	77
Fsp4HI	GCNGC	2 cut(s)	187, 387
FspBI	CTAG	2 cut(s)	252, 399
GluI	GCNGC	2 cut(s)	187, 387
GsaI	CCCAGC	1 cut(s)	463
HaeIII	GGCC	3 cut(s)	157, 408, 455
HgaI	GACGC	1 cut(s)	392
Hin1II	CATG	2 cut(s)	310, 368
HindIII	AAGCTT	2 cut(s)	105, 214
HinfI	GANTC	1 cut(s)	23
HphI	GGTGA	1 cut(s)	366
Hpy166II	GTNNAC	1 cut(s)	312
Hpy188I	TCNGA	2 cut(s)	112, 500
Hpy188III	TCNNGA	1 cut(s)	504
Hpy8I	GTNNAC	1 cut(s)	312
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	1 cut(s)	168
HpyCH4III	ACNGT	1 cut(s)	326
HpyCH4IV	ACGT	2 cut(s)	178, 276
HpyF10VI	GCNNNNNNNGC	3 cut(s)	213, 395, 452
HpyF3I	CTNAG	1 cut(s)	442
HpySE526I	ACGT	2 cut(s)	178, 276
Hsp92II	CATG	2 cut(s)	310, 368
Kzo9I	GATC	1 cut(s)	500
LmnI	GCTCC	3 cut(s)	112, 341, 359
LpnPI	CCDG	9 cut(s)	28, 42, 162, 390, 417, 432, 445, 462, 469
Lsp1109I	GCAGC	2 cut(s)	198, 398
LweI	GCATC	1 cut(s)	301
MaeI	CTAG	2 cut(s)	252, 399
MaeII	ACGT	2 cut(s)	178, 276
MaeIII	GTNAC	3 cut(s)	192, 272, 372
MalI	GATC	1 cut(s)	502
MboI	GATC	1 cut(s)	500
MboII	GAAGA	3 cut(s)	80, 112, 173
MhlI	GDGCHC	1 cut(s)	364
MluCI	AATT	2 cut(s)	231, 237
MnlI	CCTC	1 cut(s)	47
MseI	TTAA	2 cut(s)	240, 509
MslI	CAYNNNNRTG	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	405
MvaI	CCWGG	1 cut(s)	405
MwoI	GCNNNNNNNGC	3 cut(s)	213, 395, 452
NdeII	GATC	1 cut(s)	500
NlaIII	CATG	2 cut(s)	310, 368
NmuCI	GTSAC	2 cut(s)	272, 372
NspI	RCATGY	1 cut(s)	310
NspV	TTCGAA	1 cut(s)	235
OliI	CACNNNNGTG	1 cut(s)	367
PceI	AGGCCT	1 cut(s)	408
PciI	ACATGT	1 cut(s)	306
PfeI	GAWTC	1 cut(s)	23
PkrI	GCNGC	2 cut(s)	188, 388
PscI	ACATGT	1 cut(s)	306
PshBI	ATTAAT	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	403
PspEI	GGTNACC	1 cut(s)	372
PspFI	CCCAGC	1 cut(s)	459
PspGI	CCWGG	1 cut(s)	403
PspPI	GGNCC	2 cut(s)	155, 453
PsrI	GAACNNNNNNTAC	2 cut(s)	472, 504
RsaI	GTAC	1 cut(s)	481
RsaNI	GTAC	1 cut(s)	480
RseI	CAYNNNNRTG	1 cut(s)	367
SaqAI	TTAA	2 cut(s)	240, 509
SatI	GCNGC	2 cut(s)	187, 387
Sau3AI	GATC	1 cut(s)	500
Sau96I	GGNCC	2 cut(s)	155, 453
ScrFI	CCNGG	1 cut(s)	405
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	1 cut(s)	301
SfuI	TTCGAA	1 cut(s)	235
SmiMI	CAYNNNNRTG	1 cut(s)	367
SmlI	CTYRAG	1 cut(s)	116
SmoI	CTYRAG	1 cut(s)	116
Sse9I	AATT	2 cut(s)	231, 237
SseBI	AGGCCT	1 cut(s)	408
SsiI	CCGC	3 cut(s)	96, 205, 415
SspMI	CTAG	2 cut(s)	252, 399
StuI	AGGCCT	1 cut(s)	408
StyD4I	CCNGG	1 cut(s)	403
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	1 cut(s)	326
TaiI	ACGT	2 cut(s)	181, 279
TaqI	TCGA	2 cut(s)	235, 381
TaqII	GACCGA	1 cut(s)	243
TasI	AATT	2 cut(s)	231, 237
TfiI	GAWTC	1 cut(s)	23
Tru1I	TTAA	2 cut(s)	240, 509
Tru9I	TTAA	2 cut(s)	240, 509
TscAI	CASTG	1 cut(s)	302
TseFI	GTSAC	2 cut(s)	272, 372
TseI	GCWGC	2 cut(s)	186, 386
Tsp45I	GTSAC	2 cut(s)	272, 372
TspDTI	ATGAA	2 cut(s)	81, 88
TspRI	CASTG	1 cut(s)	302
VspI	ATTAAT	1 cut(s)	240
XapI	RAATTY	1 cut(s)	231
XceI	RCATGY	1 cut(s)	310
XspI	CTAG	2 cut(s)	252, 399

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.