Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0003541

Physical Location & Seq

Genomic Coordinates Reverse (-)

67387352 .. 67395962

Gene Structure 8611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG415700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGGAGCAAAGAGTTCAAATGGAGCACATGGGTGGTCACCTTTCGACGCAGCTCAAAGGGCTAGACCAGGCCTTATGCGGTGGTATCCCATTTGGGGTTTTGACTGAGCTGGTTGGGCCTGCTGGGATTGGCAAAACACAGTTTTGCCTGAAGCTTGCGTTGTTGGCTTCATTGCCGGCATCTCGTGGGGGTTTAGATGGTCATGTAATATATATCGATGTAGAATCCAAGTTTAGTTCAACAAGGCTGATAGAAATTGGAGTAAAGAGCTTCCCAGAAATATTTCACACAAAAGGACTGGCGCAAGAGATGGCTGGTAGGATCCTTGTTTTGCGGCCTACATCACTTTCTGAATTCACTGAGAGTTTGCAACAAATCAAGATTTCACTCCTTCAAAACCAAGTGAAGTTGCTAATCATTGATAGCATGGCCGCCCTTGTTTCAGGGGAATATGTGCAAGGAGCTACTCGGCAACATTTATTGGGTTGGCATATCTCCTTTATTAAATCACTTGCTGAATTTTCACGAATCCCTGTTGTTGTTACAAACCAAGTGAGATCTCAAAGTCATGATGAAAGCTGCCAGTATTCCTTTCAAGCGCATAGCAGGCAAAAGACTATAGAGGATTACAAAGGACATGACTCTCATCTTGTTCCTGCTTTGGGGATTCATTGGGCTCATGCTGTCACCATACGCCTTGTGCTTGATGCTAAATCTGGGAAGAGGTTCATCAAGCTGGCAAAGTCTCCAGTATCACCTCCTCTAGCCTTCCCATTCAACATAACGTCATCTGGAATTTCACTGCTAACTGATGATGGAATAGAGCTCACCGGACCAGAGATAAACACAATTCATTGTCAAGCATCAAAATTAATCATTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

294

Amino Acids

32.12

Weight (kDa)

8.32

Isoelectric Point (pI)

45.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad51	PF08423	14 - 267	2.4e-30	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28560 AT2G28560 AT2G28560 AT2G28560 AT2G28560 AT2G28560
fragaria_vesca	FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990
malus_domestica	MD11G1120900.v1.1
prunus_persica	Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1
pyrus_communis	pycom11g10220
rosa_chinensis	RchiOBHm_Chr5g0061521
rosa_laevigata	RLG00000035484
rosa_multiflora	Rmu_co8481717.1_g000001 Rmu_sc0006720.1_g000001 Rmu_sc0010824.1_g000011
rosa_roxburghii	Rroxscaffold_1G00019150
rosa_rugosa	Rorug05G0341400 Rorug05G0341500 Rorug05G0341600 Rorug05G0341700
rosa_samantha	Rh5AG403500 Rh5BG415700 Rh5CG440400 Rh5DG430200
rosa_wichuraiana	Rw5G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	78, 334, 432
AclWI	GGATC	2 cut(s)	316, 329
AcoI	YGGCCR	1 cut(s)	429
AcsI	RAATTY	3 cut(s)	353, 518, 795
AcuI	CTGAAG	1 cut(s)	170
AfiI	CCNNNNNNNGG	2 cut(s)	94, 662
AgsI	TTSAA	5 cut(s)	17, 240, 395, 596, 778
AjnI	CCWGG	1 cut(s)	66
AleI	CACNNNNGTG	1 cut(s)	30
AluBI	AGCT	8 cut(s)	52, 109, 154, 270, 464, 579, 736, 826
AluI	AGCT	8 cut(s)	52, 109, 154, 270, 464, 579, 736, 826
Alw21I	GWGCWC	2 cut(s)	27, 828
Alw26I	GTCTC	1 cut(s)	750
AlwI	GGATC	2 cut(s)	316, 329
AoxI	GGCC	4 cut(s)	69, 116, 335, 429
ApeKI	GCWGC	2 cut(s)	49, 579
ApoI	RAATTY	3 cut(s)	353, 518, 795
AseI	ATTAAT	2 cut(s)	872, 879
Asp700I	GAANNNNTTC	2 cut(s)	282, 725
AspLEI	GCGC	2 cut(s)	304, 601
AspS9I	GGNCC	2 cut(s)	116, 833
AsuHPI	GGTGA	4 cut(s)	29, 679, 747, 820
AvaII	GGWCC	1 cut(s)	833
BamHI	GGATCC	1 cut(s)	321
BanII	GRGCYC	2 cut(s)	679, 828
BauI	CACGAG	1 cut(s)	183
Bbv12I	GWGCWC	2 cut(s)	27, 828
BbvI	GCAGC	2 cut(s)	61, 566
BccI	CCATC	3 cut(s)	191, 304, 809
BciT130I	CCWGG	1 cut(s)	68
BciVI	GTATCC	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	750
BfaI	CTAG	2 cut(s)	62, 764
BfmI	CTRYAG	1 cut(s)	618
BfuI	GTATCC	1 cut(s)	95
BglII	AGATCT	1 cut(s)	557
BisI	GCNGC	4 cut(s)	50, 335, 432, 580
BlsI	GCNGC	4 cut(s)	51, 336, 433, 581
Bme1390I	CCNGG	1 cut(s)	68
Bme18I	GGWCC	1 cut(s)	833
BmgT120I	GGNCC	2 cut(s)	116, 833
BmiI	GGNNCC	1 cut(s)	323
BmrFI	CCNGG	1 cut(s)	68
BmsI	GCATC	3 cut(s)	188, 697, 872
BpmI	CTGGAG	1 cut(s)	732
Bsa29I	ATCGAT	1 cut(s)	216
BsaWI	WCCGGW	1 cut(s)	830
Bsc4I	CCNNNNNNNGG	2 cut(s)	94, 662
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	3 cut(s)	303, 583, 749
Bse3DI	GCAATG	1 cut(s)	170
BseBI	CCWGG	1 cut(s)	68
BseCI	ATCGAT	1 cut(s)	216
BseLI	CCNNNNNNNGG	2 cut(s)	94, 662
BseMI	GCAATG	1 cut(s)	170
BseMII	CTCAG	2 cut(s)	96, 351
BseNI	ACTGG	3 cut(s)	303, 583, 749
BseRI	GAGGAG	1 cut(s)	750
BseXI	GCAGC	2 cut(s)	61, 566
BseYI	CCCAGC	1 cut(s)	122
BshFI	GGCC	4 cut(s)	71, 118, 337, 431
BshVI	ATCGAT	1 cut(s)	216
BsiHKAI	GWGCWC	2 cut(s)	27, 828
BsiSI	CCGG	2 cut(s)	176, 831
BslI	CCNNNNNNNGG	2 cut(s)	94, 662
BsmAI	GTCTC	1 cut(s)	750
BsnI	GGCC	4 cut(s)	71, 118, 337, 431
Bsp1286I	GDGCHC	3 cut(s)	27, 679, 828
Bsp143I	GATC	2 cut(s)	321, 557
BspACI	CCGC	3 cut(s)	78, 334, 432
BspANI	GGCC	4 cut(s)	71, 118, 337, 431
BspCNI	CTCAG	2 cut(s)	97, 352
BspDI	ATCGAT	1 cut(s)	216
BspHI	TCATGA	1 cut(s)	568
BspLI	GGNNCC	1 cut(s)	323
BspPI	GGATC	2 cut(s)	316, 329
BsrDI	GCAATG	1 cut(s)	170
BsrFI	RCCGGY	1 cut(s)	175
BsrI	ACTGG	3 cut(s)	303, 583, 749
BssAI	RCCGGY	1 cut(s)	175
BssMI	GATC	2 cut(s)	321, 557
BssSI	CACGAG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	183
Bst2UI	CCWGG	1 cut(s)	68
Bst4CI	ACNGT	1 cut(s)	141
Bst6I	CTCTTC	1 cut(s)	716
BstC8I	GCNNGC	5 cut(s)	120, 156, 177, 608, 738
BstDEI	CTNAG	2 cut(s)	105, 360
BstEII	GGTNACC	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	304, 601
BstKTI	GATC	2 cut(s)	324, 560
BstMAI	GTCTC	1 cut(s)	750
BstMBI	GATC	2 cut(s)	321, 557
BstMWI	GCNNNNNNNGC	4 cut(s)	58, 115, 164, 607
BstNI	CCWGG	1 cut(s)	68
BstPI	GGTNACC	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	66
BstSFI	CTRYAG	1 cut(s)	618
BstV1I	GCAGC	2 cut(s)	61, 566
BstX2I	RGATCY	2 cut(s)	321, 557
BstYI	RGATCY	2 cut(s)	321, 557
Bsu15I	ATCGAT	1 cut(s)	216
BsuI	GTATCC	1 cut(s)	95
BsuRI	GGCC	4 cut(s)	71, 118, 337, 431
BsuTUI	ATCGAT	1 cut(s)	216
BtsI	GCAGTG	1 cut(s)	800
BtsIMutI	CAGTG	2 cut(s)	357, 800
Cac8I	GCNNGC	5 cut(s)	120, 156, 177, 608, 738
CciI	TCATGA	1 cut(s)	568
CfoI	GCGC	2 cut(s)	304, 601
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	2 cut(s)	116, 833
ClaI	ATCGAT	1 cut(s)	216
CseI	GACGC	1 cut(s)	55
CviAII	CATG	6 cut(s)	28, 203, 427, 569, 638, 680
DdeI	CTNAG	2 cut(s)	105, 360
DpnI	GATC	2 cut(s)	323, 559
DpnII	GATC	2 cut(s)	321, 557
EaeI	YGGCCR	1 cut(s)	429
Eam1104I	CTCTTC	1 cut(s)	716
EarI	CTCTTC	1 cut(s)	716
Ecl136II	GAGCTC	1 cut(s)	826
Eco147I	AGGCCT	1 cut(s)	71
Eco24I	GRGCYC	2 cut(s)	679, 828
Eco47I	GGWCC	1 cut(s)	833
Eco53kI	GAGCTC	1 cut(s)	826
Eco57I	CTGAAG	1 cut(s)	170
Eco91I	GGTNACC	1 cut(s)	35
EcoICRI	GAGCTC	1 cut(s)	826
EcoO65I	GGTNACC	1 cut(s)	35
EcoRI	GAATTC	1 cut(s)	353
EcoRII	CCWGG	1 cut(s)	66
EcoT38I	GRGCYC	2 cut(s)	679, 828
FaeI	CATG	6 cut(s)	31, 206, 430, 572, 641, 683
FatI	CATG	6 cut(s)	27, 202, 426, 568, 637, 679
Fnu4HI	GCNGC	4 cut(s)	50, 335, 432, 580
FriOI	GRGCYC	2 cut(s)	679, 828
Fsp4HI	GCNGC	4 cut(s)	50, 335, 432, 580
FspBI	CTAG	2 cut(s)	62, 764
GlaI	GCGC	2 cut(s)	303, 600
GluI	GCNGC	4 cut(s)	50, 335, 432, 580
GsaI	CCCAGC	1 cut(s)	126
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	4 cut(s)	71, 118, 337, 431
HapII	CCGG	2 cut(s)	176, 831
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	2 cut(s)	304, 601
Hin1II	CATG	6 cut(s)	31, 206, 430, 572, 641, 683
Hin6I	GCGC	2 cut(s)	302, 599
HinP1I	GCGC	2 cut(s)	302, 599
HindIII	AAGCTT	1 cut(s)	152
HinfI	GANTC	4 cut(s)	224, 528, 641, 667
HpaII	CCGG	2 cut(s)	176, 831
HphI	GGTGA	4 cut(s)	29, 679, 747, 820
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	4 cut(s)	379, 525, 569, 792
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	2 cut(s)	401, 778
HpyCH4III	ACNGT	1 cut(s)	141
HpyCH4IV	ACGT	1 cut(s)	785
HpyCH4V	TGCA	2 cut(s)	370, 457
HpyF10VI	GCNNNNNNNGC	4 cut(s)	58, 115, 164, 607
HpyF3I	CTNAG	2 cut(s)	105, 360
HpySE526I	ACGT	1 cut(s)	785
Hsp92II	CATG	6 cut(s)	31, 206, 430, 572, 641, 683
HspAI	GCGC	2 cut(s)	302, 599
KroI	GCCGGC	1 cut(s)	175
KroNI	GCCGGC	1 cut(s)	177
Kzo9I	GATC	2 cut(s)	321, 557
LmnI	GCTCC	3 cut(s)	4, 22, 461
Lsp1109I	GCAGC	2 cut(s)	61, 566
LweI	GCATC	3 cut(s)	188, 697, 872
MaeI	CTAG	2 cut(s)	62, 764
MaeII	ACGT	1 cut(s)	785
MaeIII	GTNAC	3 cut(s)	35, 541, 685
MalI	GATC	2 cut(s)	323, 559
MboI	GATC	2 cut(s)	321, 557
MboII	GAAGA	1 cut(s)	733
MflI	RGATCY	2 cut(s)	321, 557
MhlI	GDGCHC	3 cut(s)	27, 679, 828
MluCI	AATT	7 cut(s)	255, 353, 518, 795, 849, 869, 880
MlyI	GAGTC	1 cut(s)	635
MnlI	CCTC	4 cut(s)	616, 717, 768, 771
MroNI	GCCGGC	1 cut(s)	175
MroXI	GAANNNNTTC	2 cut(s)	282, 725
MseI	TTAA	3 cut(s)	504, 872, 879
MslI	CAYNNNNRTG	1 cut(s)	30
MspI	CCGG	2 cut(s)	176, 831
MspR9I	CCNGG	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	68
MwoI	GCNNNNNNNGC	4 cut(s)	58, 115, 164, 607
NaeI	GCCGGC	1 cut(s)	177
NdeII	GATC	2 cut(s)	321, 557
NgoMIV	GCCGGC	1 cut(s)	175
NlaIII	CATG	6 cut(s)	31, 206, 430, 572, 641, 683
NlaIV	GGNNCC	1 cut(s)	323
NmeAIII	GCCGAG	1 cut(s)	448
NmuCI	GTSAC	2 cut(s)	35, 685
OliI	CACNNNNGTG	1 cut(s)	30
PagI	TCATGA	1 cut(s)	568
PceI	AGGCCT	1 cut(s)	71
PdiI	GCCGGC	1 cut(s)	177
PdmI	GAANNNNTTC	2 cut(s)	282, 725
PfeI	GAWTC	3 cut(s)	224, 528, 667
PkrI	GCNGC	4 cut(s)	51, 336, 433, 581
PleI	GAGTC	1 cut(s)	635
PpsI	GAGTC	1 cut(s)	635
PshBI	ATTAAT	2 cut(s)	872, 879
Psp124BI	GAGCTC	1 cut(s)	828
Psp6I	CCWGG	1 cut(s)	66
PspEI	GGTNACC	1 cut(s)	35
PspFI	CCCAGC	1 cut(s)	122
PspGI	CCWGG	1 cut(s)	66
PspN4I	GGNNCC	1 cut(s)	323
PspPI	GGNCC	2 cut(s)	116, 833
PsuI	RGATCY	2 cut(s)	321, 557
RseI	CAYNNNNRTG	1 cut(s)	30
SacI	GAGCTC	1 cut(s)	828
SaqAI	TTAA	3 cut(s)	504, 872, 879
SatI	GCNGC	4 cut(s)	50, 335, 432, 580
Sau3AI	GATC	2 cut(s)	321, 557
Sau96I	GGNCC	2 cut(s)	116, 833
SchI	GAGTC	1 cut(s)	635
ScrFI	CCNGG	1 cut(s)	68
SduI	GDGCHC	3 cut(s)	27, 679, 828
SfaNI	GCATC	3 cut(s)	188, 697, 872
SfcI	CTRYAG	1 cut(s)	618
SinI	GGWCC	1 cut(s)	833
SmiMI	CAYNNNNRTG	1 cut(s)	30
Sse9I	AATT	7 cut(s)	255, 353, 518, 795, 849, 869, 880
SseBI	AGGCCT	1 cut(s)	71
SsiI	CCGC	3 cut(s)	78, 334, 432
SspI	AATATT	1 cut(s)	282
SspMI	CTAG	2 cut(s)	62, 764
SstI	GAGCTC	1 cut(s)	828
StuI	AGGCCT	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	66
TaaI	ACNGT	1 cut(s)	141
TaiI	ACGT	1 cut(s)	788
TaqI	TCGA	2 cut(s)	44, 216
TasI	AATT	7 cut(s)	255, 353, 518, 795, 849, 869, 880
TauI	GCSGC	2 cut(s)	337, 434
TfiI	GAWTC	3 cut(s)	224, 528, 667
Tru1I	TTAA	3 cut(s)	504, 872, 879
Tru9I	TTAA	3 cut(s)	504, 872, 879
TscAI	CASTG	2 cut(s)	364, 807
TseFI	GTSAC	2 cut(s)	35, 685
TseI	GCWGC	2 cut(s)	49, 579
Tsp45I	GTSAC	2 cut(s)	35, 685
TspDTI	ATGAA	5 cut(s)	159, 588, 659, 718, 842
TspRI	CASTG	2 cut(s)	364, 807
VpaK11BI	GGWCC	1 cut(s)	833
VspI	ATTAAT	2 cut(s)	872, 879
XapI	RAATTY	3 cut(s)	353, 518, 795
XmnI	GAANNNNTTC	2 cut(s)	282, 725
XspI	CTAG	2 cut(s)	62, 764

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.