FvH4_3g33990

DNA repair protein RAD51 homolog

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
29403982 .. 29408339
4358 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33990.t6

Sequence Viewer

Length: 1113 bp
ATGGCGAACATGCTCATCAACCAGATGGGCCTTCCCAAATCCATCGCCAACGTCTTCGCCGCTCGGAACATCACCACCGCCAAGGAAGCTTTGTCTTTGACCGAATTCGAATTGATGGAACTGCTAGATGTGAGTATGGCGCAGGTTACGTCTGCGATAGCCCGCATCAGTGAAATTACATGTCCACCTTATCAAACTGTGCTCTCTCTAATGGAGCAAAGGGTCCAGACGGAGCACATGGGTGGTCACCTCTCGACGCAGCTCAAAGGGCTAGACCAGGCCTTATGTGGTGGTATCCCATTTGGGGTTTTGACTGAGCTCGTTGGGCCTGCTGGAATTGGCAAAACACAGTTTTGCCTGAAGCTTGCGTTGTTGGCTTCATTGCCGGTGGCTTGTGGAGGTTTAAATGGTCATGTGATATATATCGATGTAGAATCCAAGTTTAGTTCAACAAGGATGATAGAGATTGGAGCAAAGAGTTTCCCAGAAATATTTCACACGAAAGGACTGGCGCAAGAGATTGGTGGTAGGATCCATGTTTTGCGGCCAACATCACTCTCTGAATTCACTGAGAGTTTGCAACAAATCAAGATCTCACTCCTTCAAAACCAAGTGAAGTTGCTAATCATTGATAGCATGGCTGCTCTTGCTGCAGGGGAACATGTGCATGGAGCTACTCGGCAACATTTATTGGGTTGGCATATCTCCTTCATTAAGTCACTTGCTGAATTTTCACGAATACCTGTTGTTGTTACAAACCAAGTGAGATCTCAAAGTCATGATGAAATCTGCCAGTATTCTTTTCAAGCACATAGCAGGGAAAAGACTGTGGATGATTGTACAGGACATGATTCTCATCTTGTTGCTGCTTTGGGAATTCACTGGGCTCATGCTGTCACAATACGCCTTGTGCTTGATGCTAAATTTGGGAAAAGGTTCATCAAGCTGGCAAAGTCTCCAATATCACCATCTCTTGCCTTCCCTTTCAACATAACATCATCTGGAATTTCATTGCTGACTGATGATGGAATAGAATTATCCGGACCAGAGATAAACACGATTCATTGTCAAGGTCACAGTGGCATAATTAATTTCGATGCAGAAAGATTTTAG

Protein Analysis

371

Amino Acids

40.21

Weight (kDa)

6.49

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad51 PF08423 14 - 267 2.3e-28 Rad51
AAA_25 PF13481 17 - 154 6.8e-06 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 133
AccBSI CCGCTC 1 cut(s) 62
AccIII TCCGGA 1 cut(s) 1040
AciI CCGC 4 cut(s) 60, 78, 163, 544
AclWI GGATC 2 cut(s) 526, 539
AcoI YGGCCR 1 cut(s) 545
AcsI RAATTY 6 cut(s) 104, 563, 728, 876, 923, 1005
AcuI CTGAAG 1 cut(s) 380
AfaI GTAC 1 cut(s) 841
AfiI CCNNNNNNNGG 1 cut(s) 304
AflIII ACRYGT 2 cut(s) 179, 661
AgsI TTSAA 4 cut(s) 450, 605, 806, 988
AjnI CCWGG 1 cut(s) 276
AleI CACNNNNGTG 1 cut(s) 240
AluBI AGCT 6 cut(s) 89, 262, 319, 364, 674, 946
AluI AGCT 6 cut(s) 89, 262, 319, 364, 674, 946
Alw21I GWGCWC 3 cut(s) 204, 237, 321
Alw26I GTCTC 1 cut(s) 960
AlwI GGATC 2 cut(s) 526, 539
Aor13HI TCCGGA 1 cut(s) 1040
AoxI GGCC 4 cut(s) 28, 279, 326, 545
ApeKI GCWGC 4 cut(s) 259, 641, 650, 866
ApoI RAATTY 6 cut(s) 104, 563, 728, 876, 923, 1005
AseI ATTAAT 1 cut(s) 1089
Asp700I GAANNNNTTC 2 cut(s) 492, 935
AspLEI GCGC 2 cut(s) 142, 514
AspS9I GGNCC 4 cut(s) 28, 223, 326, 1043
AsuHPI GGTGA 3 cut(s) 64, 239, 957
AsuII TTCGAA 1 cut(s) 108
AvaII GGWCC 2 cut(s) 223, 1043
BamHI GGATCC 1 cut(s) 531
BanII GRGCYC 2 cut(s) 321, 889
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 3 cut(s) 204, 237, 321
BbvI GCAGC 4 cut(s) 271, 628, 637, 853
BccI CCATC 5 cut(s) 19, 50, 109, 976, 1019
BciT130I CCWGG 1 cut(s) 278
BciVI GTATCC 1 cut(s) 305
BcoDI GTCTC 1 cut(s) 960
BfaI CTAG 2 cut(s) 125, 272
BfmI CTRYAG 1 cut(s) 651
BfuAI ACCTGC 1 cut(s) 133
BfuI GTATCC 1 cut(s) 305
BglII AGATCT 2 cut(s) 591, 767
BisI GCNGC 6 cut(s) 60, 260, 545, 642, 651, 867
BlsI GCNGC 6 cut(s) 61, 261, 546, 643, 652, 868
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 2 cut(s) 223, 1043
BmgT120I GGNCC 4 cut(s) 28, 223, 326, 1043
BmiI GGNNCC 2 cut(s) 224, 533
BmrFI CCNGG 1 cut(s) 278
BmrI ACTGGG 1 cut(s) 892
BmsI GCATC 3 cut(s) 174, 907, 1087
BmuI ACTGGG 1 cut(s) 892
BpiI GAAGAC 1 cut(s) 46
Bpu14I TTCGAA 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 426
BsaBI GATNNNNATC 2 cut(s) 422, 855
BsaJI CCNNGG 1 cut(s) 81
BsaWI WCCGGW 1 cut(s) 1040
Bsc4I CCNNNNNNNGG 1 cut(s) 304
Bse118I RCCGGY 1 cut(s) 385
Bse1I ACTGG 3 cut(s) 513, 793, 887
Bse3DI GCAATG 2 cut(s) 380, 1010
Bse8I GATNNNNATC 2 cut(s) 422, 855
BseAI TCCGGA 1 cut(s) 1040
BseBI CCWGG 1 cut(s) 278
BseCI ATCGAT 1 cut(s) 426
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 2 cut(s) 462, 838
BseJI GATNNNNATC 2 cut(s) 422, 855
BseLI CCNNNNNNNGG 1 cut(s) 304
BseMI GCAATG 2 cut(s) 380, 1010
BseMII CTCAG 2 cut(s) 306, 561
BseNI ACTGG 3 cut(s) 513, 793, 887
BseXI GCAGC 4 cut(s) 271, 628, 637, 853
BshFI GGCC 4 cut(s) 30, 281, 328, 547
BshVI ATCGAT 1 cut(s) 426
BsiHKAI GWGCWC 3 cut(s) 204, 237, 321
BsiSI CCGG 2 cut(s) 386, 1041
BslI CCNNNNNNNGG 1 cut(s) 304
BsmAI GTCTC 1 cut(s) 960
BsnI GGCC 4 cut(s) 30, 281, 328, 547
Bsp119I TTCGAA 1 cut(s) 108
Bsp1286I GDGCHC 4 cut(s) 204, 237, 321, 889
Bsp13I TCCGGA 1 cut(s) 1040
Bsp1407I TGTACA 1 cut(s) 839
Bsp143I GATC 3 cut(s) 531, 591, 767
BspACI CCGC 4 cut(s) 60, 78, 163, 544
BspANI GGCC 4 cut(s) 30, 281, 328, 547
BspCNI CTCAG 2 cut(s) 307, 562
BspDI ATCGAT 1 cut(s) 426
BspEI TCCGGA 1 cut(s) 1040
BspHI TCATGA 1 cut(s) 778
BspLI GGNNCC 2 cut(s) 224, 533
BspMAI CTGCAG 1 cut(s) 655
BspMI ACCTGC 1 cut(s) 133
BspPI GGATC 2 cut(s) 526, 539
BspT104I TTCGAA 1 cut(s) 108
BsrBI CCGCTC 1 cut(s) 62
BsrDI GCAATG 2 cut(s) 380, 1010
BsrFI RCCGGY 1 cut(s) 385
BsrGI TGTACA 1 cut(s) 839
BsrI ACTGG 3 cut(s) 513, 793, 887
BssAI RCCGGY 1 cut(s) 385
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 3 cut(s) 531, 591, 767
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 4 cut(s) 199, 351, 829, 1079
BstAUI TGTACA 1 cut(s) 839
BstBI TTCGAA 1 cut(s) 108
BstC8I GCNNGC 4 cut(s) 163, 330, 366, 948
BstDEI CTNAG 2 cut(s) 315, 570
BstEII GGTNACC 1 cut(s) 245
BstF5I GGATG 2 cut(s) 462, 838
BstHHI GCGC 2 cut(s) 142, 514
BstKTI GATC 3 cut(s) 534, 594, 770
BstMAI GTCTC 1 cut(s) 960
BstMBI GATC 3 cut(s) 531, 591, 767
BstMWI GCNNNNNNNGC 6 cut(s) 86, 268, 325, 374, 647, 650
BstNI CCWGG 1 cut(s) 278
BstNSI RCATGY 3 cut(s) 13, 183, 665
BstPI GGTNACC 1 cut(s) 245
BstSCI CCNGG 1 cut(s) 276
BstSFI CTRYAG 1 cut(s) 651
BstV1I GCAGC 4 cut(s) 271, 628, 637, 853
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 3 cut(s) 531, 591, 767
BstYI RGATCY 3 cut(s) 531, 591, 767
Bsu15I ATCGAT 1 cut(s) 426
BsuI GTATCC 1 cut(s) 305
BsuRI GGCC 4 cut(s) 30, 281, 328, 547
BsuTUI ATCGAT 1 cut(s) 426
BtgZI GCGATG 1 cut(s) 28
BtsCI GGATG 2 cut(s) 462, 838
BtsIMutI CAGTG 4 cut(s) 175, 567, 880, 1084
BveI ACCTGC 1 cut(s) 133
Cac8I GCNNGC 4 cut(s) 163, 330, 366, 948
CciI TCATGA 1 cut(s) 778
CfoI GCGC 2 cut(s) 142, 514
Cfr10I RCCGGY 1 cut(s) 385
Cfr13I GGNCC 4 cut(s) 28, 223, 326, 1043
ClaI ATCGAT 1 cut(s) 426
CseI GACGC 1 cut(s) 265
Csp6I GTAC 1 cut(s) 840
CviQI GTAC 1 cut(s) 840
DdeI CTNAG 2 cut(s) 315, 570
DpnI GATC 3 cut(s) 533, 593, 769
DpnII GATC 3 cut(s) 531, 591, 767
DraI TTTAAA 1 cut(s) 405
EaeI YGGCCR 1 cut(s) 545
Ecl136II GAGCTC 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 81
Eco147I AGGCCT 1 cut(s) 281
Eco24I GRGCYC 2 cut(s) 321, 889
Eco47I GGWCC 2 cut(s) 223, 1043
Eco53kI GAGCTC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 380
Eco91I GGTNACC 1 cut(s) 245
EcoICRI GAGCTC 1 cut(s) 319
EcoO65I GGTNACC 1 cut(s) 245
EcoRI GAATTC 3 cut(s) 104, 563, 876
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 81
EcoT38I GRGCYC 2 cut(s) 321, 889
ErhI CCWWGG 1 cut(s) 81
FauI CCCGC 1 cut(s) 170
Fnu4HI GCNGC 6 cut(s) 60, 260, 545, 642, 651, 867
FokI GGATG 2 cut(s) 469, 845
FriOI GRGCYC 2 cut(s) 321, 889
Fsp4HI GCNGC 6 cut(s) 60, 260, 545, 642, 651, 867
FspBI CTAG 2 cut(s) 125, 272
GlaI GCGC 2 cut(s) 141, 513
GluI GCNGC 6 cut(s) 60, 260, 545, 642, 651, 867
HaeIII GGCC 4 cut(s) 30, 281, 328, 547
HapII CCGG 2 cut(s) 386, 1041
HgaI GACGC 1 cut(s) 265
HhaI GCGC 2 cut(s) 142, 514
Hin6I GCGC 2 cut(s) 140, 512
HinP1I GCGC 2 cut(s) 140, 512
HindIII AAGCTT 2 cut(s) 87, 362
HinfI GANTC 3 cut(s) 434, 851, 1060
HpaII CCGG 2 cut(s) 386, 1041
HphI GGTGA 3 cut(s) 64, 239, 957
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 2 cut(s) 66, 562
Hpy188III TCNNGA 7 cut(s) 226, 253, 589, 735, 779, 1002, 1041
Hpy8I GTNNAC 1 cut(s) 185
Hpy99I CGWCG 1 cut(s) 259
HpyAV CCTTC 4 cut(s) 41, 611, 718, 988
HpyCH4III ACNGT 4 cut(s) 199, 351, 829, 1079
HpyCH4IV ACGT 2 cut(s) 51, 149
HpyCH4V TGCA 4 cut(s) 580, 653, 667, 1100
HpyF10VI GCNNNNNNNGC 6 cut(s) 86, 268, 325, 374, 647, 650
HpyF3I CTNAG 2 cut(s) 315, 570
HpySE526I ACGT 2 cut(s) 51, 149
HspAI GCGC 2 cut(s) 140, 512
Kpn2I TCCGGA 1 cut(s) 1040
Kzo9I GATC 3 cut(s) 531, 591, 767
LmnI GCTCC 4 cut(s) 214, 232, 470, 671
Lsp1109I GCAGC 4 cut(s) 271, 628, 637, 853
LweI GCATC 3 cut(s) 174, 907, 1087
MaeI CTAG 2 cut(s) 125, 272
MaeII ACGT 2 cut(s) 51, 149
MaeIII GTNAC 6 cut(s) 145, 245, 717, 751, 895, 1073
MalI GATC 3 cut(s) 533, 593, 769
MbiI CCGCTC 1 cut(s) 62
MboI GATC 3 cut(s) 531, 591, 767
MboII GAAGA 1 cut(s) 46
MflI RGATCY 3 cut(s) 531, 591, 767
MhlI GDGCHC 4 cut(s) 204, 237, 321, 889
MnlI CCTC 2 cut(s) 260, 392
MroI TCCGGA 1 cut(s) 1040
MroXI GAANNNNTTC 2 cut(s) 492, 935
MseI TTAA 3 cut(s) 404, 714, 1089
MslI CAYNNNNRTG 2 cut(s) 240, 666
MspI CCGG 2 cut(s) 386, 1041
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 6 cut(s) 86, 268, 325, 374, 647, 650
NdeII GATC 3 cut(s) 531, 591, 767
NlaIV GGNNCC 2 cut(s) 224, 533
NmeAIII GCCGAG 1 cut(s) 658
NmuCI GTSAC 4 cut(s) 245, 717, 895, 1073
NspI RCATGY 3 cut(s) 13, 183, 665
NspV TTCGAA 1 cut(s) 108
OliI CACNNNNGTG 1 cut(s) 240
PagI TCATGA 1 cut(s) 778
PceI AGGCCT 1 cut(s) 281
PciI ACATGT 2 cut(s) 179, 661
PdmI GAANNNNTTC 2 cut(s) 492, 935
PfeI GAWTC 3 cut(s) 434, 851, 1060
PkrI GCNGC 6 cut(s) 61, 261, 546, 643, 652, 868
PscI ACATGT 2 cut(s) 179, 661
PshBI ATTAAT 1 cut(s) 1089
Psp124BI GAGCTC 1 cut(s) 321
Psp6I CCWGG 1 cut(s) 276
PspEI GGTNACC 1 cut(s) 245
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 224, 533
PspPI GGNCC 4 cut(s) 28, 223, 326, 1043
PstI CTGCAG 1 cut(s) 655
PsuI RGATCY 3 cut(s) 531, 591, 767
RsaI GTAC 1 cut(s) 841
RsaNI GTAC 1 cut(s) 840
RseI CAYNNNNRTG 2 cut(s) 240, 666
SacI GAGCTC 1 cut(s) 321
SaqAI TTAA 3 cut(s) 404, 714, 1089
SatI GCNGC 6 cut(s) 60, 260, 545, 642, 651, 867
Sau3AI GATC 3 cut(s) 531, 591, 767
Sau96I GGNCC 4 cut(s) 28, 223, 326, 1043
ScrFI CCNGG 1 cut(s) 278
SduI GDGCHC 4 cut(s) 204, 237, 321, 889
SfaNI GCATC 3 cut(s) 174, 907, 1087
SfcI CTRYAG 1 cut(s) 651
SfuI TTCGAA 1 cut(s) 108
SinI GGWCC 2 cut(s) 223, 1043
SmiMI CAYNNNNRTG 2 cut(s) 240, 666
SseBI AGGCCT 1 cut(s) 281
SsiI CCGC 4 cut(s) 60, 78, 163, 544
SspI AATATT 1 cut(s) 492
SspMI CTAG 2 cut(s) 125, 272
SstI GAGCTC 1 cut(s) 321
StuI AGGCCT 1 cut(s) 281
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 4 cut(s) 199, 351, 829, 1079
TaiI ACGT 2 cut(s) 54, 152
TaqI TCGA 4 cut(s) 108, 254, 426, 1095
TaqII GACCGA 1 cut(s) 116
TatI WGTACW 1 cut(s) 839
TauI GCSGC 2 cut(s) 62, 547
TfiI GAWTC 3 cut(s) 434, 851, 1060
Tru1I TTAA 3 cut(s) 404, 714, 1089
Tru9I TTAA 3 cut(s) 404, 714, 1089
TscAI CASTG 4 cut(s) 175, 574, 887, 1084
TseFI GTSAC 4 cut(s) 245, 717, 895, 1073
TseI GCWGC 4 cut(s) 259, 641, 650, 866
Tsp45I GTSAC 4 cut(s) 245, 717, 895, 1073
TspDTI ATGAA 6 cut(s) 369, 700, 798, 928, 999, 1052
TspGWI ACGGA 1 cut(s) 245
TspRI CASTG 4 cut(s) 175, 574, 887, 1084
VpaK11BI GGWCC 2 cut(s) 223, 1043
VspI ATTAAT 1 cut(s) 1089
XapI RAATTY 6 cut(s) 104, 563, 728, 876, 923, 1005
XceI RCATGY 3 cut(s) 13, 183, 665
XcmI CCANNNNNNNNNTGG 1 cut(s) 284
XmnI GAANNNNTTC 2 cut(s) 492, 935
XspI CTAG 2 cut(s) 125, 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.