Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006720.1

Orthogroup ID

OG0003541

Physical Location & Seq

Genomic Coordinates Reverse (-)

4162 .. 7504

Gene Structure 3343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006720.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 861 bp

atggggacggggacggggaatccccagtatcttattactgggattagggagggtatggggatgaagaatgaagtcggggtttctcatttggcgggaagaaagcttcggagcttgagagagaaaatggcgaacaagctcatcaaccagatgggccttcccaaatctatcgccaacgtcttcgcagctcgtaacatcagcaccgccaaggaagctttgtctttgaccgaattcgaattaatggaagtgctagatgtgagtatggcacaagtcacgtctgcgatagctcgcatcagtgaaatcacatgtccaccctaccaaactgttctctctctaatggagcaaagagttcaaatggagcacatgggtggtcacctttcgacgcagctcaaagggctagaccaggccttatgcggtggtatcccatttggggttttgactgagctggttgggcctgctgggattggcaaaacacagttttgcctgaagcttgcattgttggcttcattgccggcatctcgtgggggtttagatggtcatgtaatatatatcgatgtagaatccaagtttagttcaacaaggcaaaagactatagaggattataaaggacatgactctcatcttgttcctgctttggggattcattgggctcatgctgtcaccatacgccttgtgcttgatgctaaatctgggaagaggttcatcaagctggcaaagtctccagtatcacctcctctagccttcccattcaacataacgtcatctggaatttcactgctaactgatgatggaatagagctcaccggaccagagataaacacaattcattgtcaaggtttgtcgctgagaattcttgttgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

286

Amino Acids

30.69

Weight (kDa)

8.86

Isoelectric Point (pI)

37.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28560 AT2G28560 AT2G28560 AT2G28560 AT2G28560 AT2G28560
fragaria_vesca	FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990
malus_domestica	MD11G1120900.v1.1
prunus_persica	Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1
pyrus_communis	pycom11g10220
rosa_chinensis	RchiOBHm_Chr5g0061521
rosa_laevigata	RLG00000035484
rosa_multiflora	Rmu_co8481717.1_g000001 Rmu_sc0006720.1_g000001 Rmu_sc0010824.1_g000011
rosa_roxburghii	Rroxscaffold_1G00019150
rosa_rugosa	Rorug05G0341400 Rorug05G0341500 Rorug05G0341600 Rorug05G0341700
rosa_samantha	Rh5AG403500 Rh5BG415700 Rh5CG440400 Rh5DG430200
rosa_wichuraiana	Rw5G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	600
AciI	CCGC	3 cut(s)	92, 201, 411
AcsI	RAATTY	3 cut(s)	227, 765, 846
AcuI	CTGAAG	1 cut(s)	503
AfiI	CCNNNNNNNGG	2 cut(s)	427, 632
AflIII	ACRYGT	1 cut(s)	302
AgsI	TTSAA	3 cut(s)	350, 573, 748
AjiI	CACGTC	1 cut(s)	273
AjnI	CCWGG	1 cut(s)	399
AleI	CACNNNNGTG	1 cut(s)	363
Alw21I	GWGCWC	2 cut(s)	360, 798
Alw26I	GTCTC	1 cut(s)	720
AoxI	GGCC	3 cut(s)	151, 402, 449
ApeKI	GCWGC	2 cut(s)	182, 382
ApoI	RAATTY	3 cut(s)	227, 765, 846
AseI	ATTAAT	1 cut(s)	236
Asp700I	GAANNNNTTC	1 cut(s)	695
AspS9I	GGNCC	3 cut(s)	151, 449, 803
AsuHPI	GGTGA	4 cut(s)	362, 649, 717, 790
AsuII	TTCGAA	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	803
BanII	GRGCYC	2 cut(s)	649, 798
BauI	CACGAG	1 cut(s)	516
BbsI	GAAGAC	1 cut(s)	169
Bbv12I	GWGCWC	2 cut(s)	360, 798
BbvI	GCAGC	2 cut(s)	194, 394
BccI	CCATC	3 cut(s)	142, 524, 779
BciT130I	CCWGG	1 cut(s)	401
BciVI	GTATCC	1 cut(s)	428
BcoDI	GTCTC	1 cut(s)	720
BfaI	CTAG	3 cut(s)	248, 395, 734
BfmI	CTRYAG	1 cut(s)	588
BfuI	GTATCC	1 cut(s)	428
BisI	GCNGC	2 cut(s)	183, 383
BlsI	GCNGC	2 cut(s)	184, 384
Bme1390I	CCNGG	1 cut(s)	401
Bme18I	GGWCC	1 cut(s)	803
BmgBI	CACGTC	1 cut(s)	273
BmgT120I	GGNCC	3 cut(s)	151, 449, 803
BmrFI	CCNGG	1 cut(s)	401
BmrI	ACTGGG	2 cut(s)	19, 48
BmsI	GCATC	3 cut(s)	297, 521, 667
BmuI	ACTGGG	2 cut(s)	19, 48
BpiI	GAAGAC	1 cut(s)	169
BpmI	CTGGAG	1 cut(s)	702
Bpu14I	TTCGAA	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	133
Bsa29I	ATCGAT	1 cut(s)	549
BsaJI	CCNNGG	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	800
Bsc4I	CCNNNNNNNGG	2 cut(s)	427, 632
Bse118I	RCCGGY	1 cut(s)	508
Bse1I	ACTGG	3 cut(s)	25, 43, 719
Bse3DI	GCAATG	1 cut(s)	503
BseBI	CCWGG	1 cut(s)	401
BseCI	ATCGAT	1 cut(s)	549
BseDI	CCNNGG	1 cut(s)	204
BseGI	GGATG	1 cut(s)	66
BseLI	CCNNNNNNNGG	2 cut(s)	427, 632
BseMI	GCAATG	1 cut(s)	503
BseMII	CTCAG	2 cut(s)	429, 833
BseNI	ACTGG	3 cut(s)	25, 43, 719
BseRI	GAGGAG	1 cut(s)	720
BseXI	GCAGC	2 cut(s)	194, 394
BseYI	CCCAGC	1 cut(s)	455
BshFI	GGCC	3 cut(s)	153, 404, 451
BshVI	ATCGAT	1 cut(s)	549
BsiHKAI	GWGCWC	2 cut(s)	360, 798
BsiSI	CCGG	2 cut(s)	509, 801
BslFI	GGGAC	2 cut(s)	19, 25
BslI	CCNNNNNNNGG	2 cut(s)	427, 632
BsmAI	GTCTC	1 cut(s)	720
BsmFI	GGGAC	2 cut(s)	19, 25
BsnI	GGCC	3 cut(s)	153, 404, 451
Bsp119I	TTCGAA	1 cut(s)	231
Bsp1286I	GDGCHC	3 cut(s)	360, 649, 798
BspACI	CCGC	3 cut(s)	92, 201, 411
BspANI	GGCC	3 cut(s)	153, 404, 451
BspCNI	CTCAG	2 cut(s)	430, 834
BspDI	ATCGAT	1 cut(s)	549
BspT104I	TTCGAA	1 cut(s)	231
BsrDI	GCAATG	1 cut(s)	503
BsrFI	RCCGGY	1 cut(s)	508
BsrI	ACTGG	3 cut(s)	25, 43, 719
BssAI	RCCGGY	1 cut(s)	508
BssECI	CCNNGG	1 cut(s)	204
BssSI	CACGAG	1 cut(s)	516
BssT1I	CCWWGG	1 cut(s)	204
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	1 cut(s)	401
Bst4CI	ACNGT	2 cut(s)	322, 474
Bst6I	CTCTTC	1 cut(s)	686
BstBI	TTCGAA	1 cut(s)	231
BstC8I	GCNNGC	5 cut(s)	286, 453, 489, 510, 708
BstDEI	CTNAG	2 cut(s)	438, 842
BstEII	GGTNACC	1 cut(s)	368
BstF5I	GGATG	1 cut(s)	66
BstMAI	GTCTC	1 cut(s)	720
BstMWI	GCNNNNNNNGC	4 cut(s)	209, 391, 448, 497
BstNI	CCWGG	1 cut(s)	401
BstNSI	RCATGY	1 cut(s)	306
BstPI	GGTNACC	1 cut(s)	368
BstSCI	CCNGG	1 cut(s)	399
BstSFI	CTRYAG	1 cut(s)	588
BstV1I	GCAGC	2 cut(s)	194, 394
BstV2I	GAAGAC	1 cut(s)	169
Bsu15I	ATCGAT	1 cut(s)	549
BsuI	GTATCC	1 cut(s)	428
BsuRI	GGCC	3 cut(s)	153, 404, 451
BsuTUI	ATCGAT	1 cut(s)	549
BtrI	CACGTC	1 cut(s)	273
BtsCI	GGATG	1 cut(s)	66
BtsI	GCAGTG	1 cut(s)	770
BtsIMutI	CAGTG	2 cut(s)	298, 770
Cac8I	GCNNGC	5 cut(s)	286, 453, 489, 510, 708
Cfr10I	RCCGGY	1 cut(s)	508
Cfr13I	GGNCC	3 cut(s)	151, 449, 803
ClaI	ATCGAT	1 cut(s)	549
CseI	GACGC	1 cut(s)	388
CviAII	CATG	5 cut(s)	303, 361, 536, 608, 650
DdeI	CTNAG	2 cut(s)	438, 842
Eam1104I	CTCTTC	1 cut(s)	686
EarI	CTCTTC	1 cut(s)	686
Ecl136II	GAGCTC	1 cut(s)	796
Eco130I	CCWWGG	1 cut(s)	204
Eco147I	AGGCCT	1 cut(s)	404
Eco24I	GRGCYC	2 cut(s)	649, 798
Eco47I	GGWCC	1 cut(s)	803
Eco53kI	GAGCTC	1 cut(s)	796
Eco57I	CTGAAG	1 cut(s)	503
Eco91I	GGTNACC	1 cut(s)	368
EcoICRI	GAGCTC	1 cut(s)	796
EcoO65I	GGTNACC	1 cut(s)	368
EcoRI	GAATTC	2 cut(s)	227, 846
EcoRII	CCWGG	1 cut(s)	399
EcoT14I	CCWWGG	1 cut(s)	204
EcoT38I	GRGCYC	2 cut(s)	649, 798
ErhI	CCWWGG	1 cut(s)	204
FaeI	CATG	5 cut(s)	306, 364, 539, 611, 653
FaqI	GGGAC	2 cut(s)	19, 25
FatI	CATG	5 cut(s)	302, 360, 535, 607, 649
FauI	CCCGC	1 cut(s)	85
Fnu4HI	GCNGC	2 cut(s)	183, 383
FokI	GGATG	1 cut(s)	73
FriOI	GRGCYC	2 cut(s)	649, 798
Fsp4HI	GCNGC	2 cut(s)	183, 383
FspBI	CTAG	3 cut(s)	248, 395, 734
GluI	GCNGC	2 cut(s)	183, 383
GsaI	CCCAGC	1 cut(s)	459
GsuI	CTGGAG	1 cut(s)	702
HaeIII	GGCC	3 cut(s)	153, 404, 451
HapII	CCGG	2 cut(s)	509, 801
HgaI	GACGC	1 cut(s)	388
Hin1II	CATG	5 cut(s)	306, 364, 539, 611, 653
HindIII	AAGCTT	3 cut(s)	101, 210, 485
HinfI	GANTC	4 cut(s)	19, 557, 611, 637
HpaII	CCGG	2 cut(s)	509, 801
HphI	GGTGA	4 cut(s)	362, 649, 717, 790
Hpy166II	GTNNAC	1 cut(s)	308
Hpy188I	TCNGA	1 cut(s)	108
Hpy188III	TCNNGA	1 cut(s)	762
Hpy8I	GTNNAC	1 cut(s)	308
Hpy99I	CGWCG	1 cut(s)	382
HpyAV	CCTTC	2 cut(s)	164, 748
HpyCH4III	ACNGT	2 cut(s)	322, 474
HpyCH4IV	ACGT	3 cut(s)	174, 272, 755
HpyCH4V	TGCA	1 cut(s)	491
HpyF10VI	GCNNNNNNNGC	4 cut(s)	209, 391, 448, 497
HpyF3I	CTNAG	2 cut(s)	438, 842
HpySE526I	ACGT	3 cut(s)	174, 272, 755
Hsp92II	CATG	5 cut(s)	306, 364, 539, 611, 653
KroI	GCCGGC	1 cut(s)	508
KroNI	GCCGGC	1 cut(s)	510
LmnI	GCTCC	3 cut(s)	108, 337, 355
Lsp1109I	GCAGC	2 cut(s)	194, 394
LweI	GCATC	3 cut(s)	297, 521, 667
MaeI	CTAG	3 cut(s)	248, 395, 734
MaeII	ACGT	3 cut(s)	174, 272, 755
MaeIII	GTNAC	4 cut(s)	188, 268, 368, 655
MboII	GAAGA	4 cut(s)	76, 108, 169, 703
MhlI	GDGCHC	3 cut(s)	360, 649, 798
MluCI	AATT	5 cut(s)	227, 233, 765, 819, 846
MlyI	GAGTC	1 cut(s)	605
MnlI	CCTC	5 cut(s)	43, 586, 687, 738, 741
MroNI	GCCGGC	1 cut(s)	508
MroXI	GAANNNNTTC	1 cut(s)	695
MseI	TTAA	1 cut(s)	236
MslI	CAYNNNNRTG	1 cut(s)	363
MspI	CCGG	2 cut(s)	509, 801
MspR9I	CCNGG	1 cut(s)	401
MvaI	CCWGG	1 cut(s)	401
MwoI	GCNNNNNNNGC	4 cut(s)	209, 391, 448, 497
NaeI	GCCGGC	1 cut(s)	510
NgoMIV	GCCGGC	1 cut(s)	508
NlaIII	CATG	5 cut(s)	306, 364, 539, 611, 653
NmuCI	GTSAC	3 cut(s)	268, 368, 655
NspI	RCATGY	1 cut(s)	306
NspV	TTCGAA	1 cut(s)	231
OliI	CACNNNNGTG	1 cut(s)	363
PceI	AGGCCT	1 cut(s)	404
PciI	ACATGT	1 cut(s)	302
PdiI	GCCGGC	1 cut(s)	510
PdmI	GAANNNNTTC	1 cut(s)	695
PfeI	GAWTC	3 cut(s)	19, 557, 637
PkrI	GCNGC	2 cut(s)	184, 384
PleI	GAGTC	1 cut(s)	605
PpsI	GAGTC	1 cut(s)	605
PscI	ACATGT	1 cut(s)	302
PshBI	ATTAAT	1 cut(s)	236
PsiI	TTATAA	1 cut(s)	600
Psp124BI	GAGCTC	1 cut(s)	798
Psp6I	CCWGG	1 cut(s)	399
PspEI	GGTNACC	1 cut(s)	368
PspFI	CCCAGC	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	399
PspPI	GGNCC	3 cut(s)	151, 449, 803
RseI	CAYNNNNRTG	1 cut(s)	363
SacI	GAGCTC	1 cut(s)	798
SaqAI	TTAA	1 cut(s)	236
SatI	GCNGC	2 cut(s)	183, 383
Sau96I	GGNCC	3 cut(s)	151, 449, 803
SchI	GAGTC	1 cut(s)	605
ScrFI	CCNGG	1 cut(s)	401
SduI	GDGCHC	3 cut(s)	360, 649, 798
SfaNI	GCATC	3 cut(s)	297, 521, 667
SfcI	CTRYAG	1 cut(s)	588
SfuI	TTCGAA	1 cut(s)	231
SinI	GGWCC	1 cut(s)	803
SmiMI	CAYNNNNRTG	1 cut(s)	363
SmlI	CTYRAG	1 cut(s)	112
SmoI	CTYRAG	1 cut(s)	112
Sse9I	AATT	5 cut(s)	227, 233, 765, 819, 846
SseBI	AGGCCT	1 cut(s)	404
SsiI	CCGC	3 cut(s)	92, 201, 411
SspMI	CTAG	3 cut(s)	248, 395, 734
SstI	GAGCTC	1 cut(s)	798
StuI	AGGCCT	1 cut(s)	404
StyD4I	CCNGG	1 cut(s)	399
StyI	CCWWGG	1 cut(s)	204
TaaI	ACNGT	2 cut(s)	322, 474
TaiI	ACGT	3 cut(s)	177, 275, 758
TaqI	TCGA	3 cut(s)	231, 377, 549
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	5 cut(s)	227, 233, 765, 819, 846
TfiI	GAWTC	3 cut(s)	19, 557, 637
Tru1I	TTAA	1 cut(s)	236
Tru9I	TTAA	1 cut(s)	236
TscAI	CASTG	2 cut(s)	298, 777
TseFI	GTSAC	3 cut(s)	268, 368, 655
TseI	GCWGC	2 cut(s)	182, 382
Tsp45I	GTSAC	3 cut(s)	268, 368, 655
TspDTI	ATGAA	6 cut(s)	77, 84, 492, 629, 688, 812
TspRI	CASTG	2 cut(s)	298, 777
VpaK11BI	GGWCC	1 cut(s)	803
VspI	ATTAAT	1 cut(s)	236
XapI	RAATTY	3 cut(s)	227, 765, 846
XceI	RCATGY	1 cut(s)	306
XmnI	GAANNNNTTC	1 cut(s)	695
XspI	CTAG	3 cut(s)	248, 395, 734

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.