Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003541

Physical Location & Seq

Genomic Coordinates Forward (+)

6213437 .. 6217138

Gene Structure 3702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G090900.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGGCGAACAAGCTCATCAACCAGATGGGCCTCCCCAAATCCATCGCTAACGTTTTCGCAGCTCGTAACATCACCACCGCCAAGGAAGCTTTGTCTTTAACCGAATTCGAGTTAATGGAGGTGTTAGATGTGAGTTTAGCAGATGTCACGTCTGCAATAGCTCGTATCAGCGAAATTACATGTCCACCCTATCAAACTGCGTTAACTCTAATGGAGCAAAGGGTTCAGAAGGAGCACATGGGTGGCCACCTCCCCACCCGCCTCAAAGGACTAGACAATGCCTTATGTGGTGGGATTCCATTTGGGGTTTTAACTGAGCTGGTTGGTCCTGCTGGCATTGGCAAAACTCAGCTTTGCCTGAAGCTCGCATTGTTGGCCTCGTTGCCGACAGCTTATGGAGGTTTAGGTGGTCGTGTAATATACATTGATGTAGAATCTAAATTCAGTTCAAAAAGGATGATAGAAATGGGATCGAAGAGTTTTCCAGATATGTTTTACACGAAAGGAATGGCCCAAGAGATGGCAGGTAGGATCCTTGTTTTGCAGCCGGCATCACTTTCTGAATTCACTGAGAGTTTGCAACAACTCAAGATTTCACTTCTTCAAAACCAAGTGAAGTTGCTAATCATCGATAGCATGGCTGCTCTTATTTCGGGGGAATATGGACAGGGAACTGCCAGGCAGCATTTATTGGGTTGGCATATTTCCTTTATTAAGTCGCTTGCTGAATTTTCACGAATCCCTGTTGTTGTTACAAACCAAGTGAGGTCTCAAACTCGTGATGAAGCCTGCCAGTATTCTTTTCAAGGGCAGAGCAGGGAAAAAGCAGTGGAGGATCATACAGGATACGATTCTCATCTTGTTGCTGCTTTGGGGATTCACTGGGCTCATGCTGTGACCATACGTCTAGTGCTGGATTCTAAATCTGGGAAGAGGTTCATCAAGCTGGCAAAGTCGCCCATATCACCACCTCTGGCCTTCCCTTATAACATAACATCATCTGGAATCACATTGCTTGATGATGATGGAATAGAACTGACAGGACCAGAGATAAACTCAATTCATTGTCAAGGACACAGTGACATAATTAATTTTGATGGGGAAAGATTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

372

Amino Acids

40.47

Weight (kDa)

6.56

Isoelectric Point (pI)

41.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28560 AT2G28560 AT2G28560 AT2G28560 AT2G28560 AT2G28560
fragaria_vesca	FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990
malus_domestica	MD11G1120900.v1.1
prunus_persica	Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1
pyrus_communis	pycom11g10220
rosa_chinensis	RchiOBHm_Chr5g0061521
rosa_laevigata	RLG00000035484
rosa_multiflora	Rmu_co8481717.1_g000001 Rmu_sc0006720.1_g000001 Rmu_sc0010824.1_g000011
rosa_roxburghii	Rroxscaffold_1G00019150
rosa_rugosa	Rorug05G0341400 Rorug05G0341500 Rorug05G0341600 Rorug05G0341700
rosa_samantha	Rh5AG403500 Rh5BG415700 Rh5CG440400 Rh5DG430200
rosa_wichuraiana	Rw5G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	987
Acc36I	ACCTGC	1 cut(s)	515
AccB7I	CCANNNNNTGG	1 cut(s)	520
AciI	CCGC	2 cut(s)	78, 259
AclI	AACGTT	1 cut(s)	51
AclWI	GGATC	4 cut(s)	478, 526, 539, 843
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	4 cut(s)	104, 440, 563, 728
AcuI	CTGAAG	1 cut(s)	380
AfiI	CCNNNNNNNGG	1 cut(s)	520
AflIII	ACRYGT	1 cut(s)	179
AgsI	TTSAA	3 cut(s)	450, 605, 806
AhdI	GACNNNNNGTC	1 cut(s)	903
AjiI	CACGTC	1 cut(s)	150
AjnI	CCWGG	1 cut(s)	677
AleI	CACNNNNGTG	1 cut(s)	240
AluBI	AGCT	9 cut(s)	13, 62, 89, 161, 319, 352, 364, 392, 946
AluI	AGCT	9 cut(s)	13, 62, 89, 161, 319, 352, 364, 392, 946
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	774
AlwI	GGATC	4 cut(s)	478, 526, 539, 843
AoxI	GGCC	5 cut(s)	28, 244, 375, 510, 975
ApeKI	GCWGC	5 cut(s)	59, 544, 641, 682, 866
ApoI	RAATTY	4 cut(s)	104, 440, 563, 728
AseI	ATTAAT	1 cut(s)	1089
Asp700I	GAANNNNTTC	2 cut(s)	935, 1107
AspS9I	GGNCC	4 cut(s)	28, 326, 511, 1043
AsuHPI	GGTGA	2 cut(s)	64, 957
AvaII	GGWCC	2 cut(s)	326, 1043
BalI	TGGCCA	1 cut(s)	246
BamHI	GGATCC	1 cut(s)	531
BanII	GRGCYC	1 cut(s)	889
BauI	CACGAG	1 cut(s)	777
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	5 cut(s)	71, 556, 628, 694, 853
BccI	CCATC	5 cut(s)	19, 50, 514, 1019, 1091
BciT130I	CCWGG	1 cut(s)	679
BciVI	GTATCC	1 cut(s)	839
BcoDI	GTCTC	1 cut(s)	774
BfaI	CTAG	2 cut(s)	272, 908
BfuAI	ACCTGC	1 cut(s)	515
BfuI	GTATCC	1 cut(s)	839
BisI	GCNGC	5 cut(s)	60, 545, 642, 683, 867
BlsI	GCNGC	5 cut(s)	61, 546, 643, 684, 868
Bme1390I	CCNGG	1 cut(s)	679
Bme18I	GGWCC	2 cut(s)	326, 1043
BmeRI	GACNNNNNGTC	1 cut(s)	903
BmgBI	CACGTC	1 cut(s)	150
BmgT120I	GGNCC	4 cut(s)	28, 326, 511, 1043
BmiI	GGNNCC	1 cut(s)	533
BmrFI	CCNGG	1 cut(s)	679
BmrI	ACTGGG	1 cut(s)	892
BmsI	GCATC	1 cut(s)	560
BmuI	ACTGGG	1 cut(s)	892
BplI	GAGNNNNNCTC	2 cut(s)	1040, 1072
BpuEI	CTTGAG	1 cut(s)	572
Bsa29I	ATCGAT	1 cut(s)	630
BsaBI	GATNNNNATC	1 cut(s)	855
BsaI	GGTCTC	1 cut(s)	774
BsaJI	CCNNGG	1 cut(s)	81
Bsc4I	CCNNNNNNNGG	1 cut(s)	520
Bse118I	RCCGGY	1 cut(s)	547
Bse1I	ACTGG	2 cut(s)	793, 887
Bse3DI	GCAATG	1 cut(s)	1010
Bse8I	GATNNNNATC	1 cut(s)	855
BseBI	CCWGG	1 cut(s)	679
BseCI	ATCGAT	1 cut(s)	630
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	462
BseJI	GATNNNNATC	1 cut(s)	855
BseLI	CCNNNNNNNGG	1 cut(s)	520
BseMI	GCAATG	1 cut(s)	1010
BseMII	CTCAG	3 cut(s)	306, 362, 561
BseNI	ACTGG	2 cut(s)	793, 887
BseXI	GCAGC	5 cut(s)	71, 556, 628, 694, 853
BshFI	GGCC	5 cut(s)	30, 246, 377, 512, 977
BshVI	ATCGAT	1 cut(s)	630
BsiHKAI	GWGCWC	1 cut(s)	237
BsiSI	CCGG	1 cut(s)	548
BslI	CCNNNNNNNGG	1 cut(s)	520
BsmAI	GTCTC	1 cut(s)	774
BsnI	GGCC	5 cut(s)	30, 246, 377, 512, 977
Bso31I	GGTCTC	1 cut(s)	774
Bsp1286I	GDGCHC	2 cut(s)	237, 889
Bsp143I	GATC	3 cut(s)	470, 531, 835
BspACI	CCGC	2 cut(s)	78, 259
BspANI	GGCC	5 cut(s)	30, 246, 377, 512, 977
BspCNI	CTCAG	3 cut(s)	307, 361, 562
BspDI	ATCGAT	1 cut(s)	630
BspLI	GGNNCC	1 cut(s)	533
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	4 cut(s)	478, 526, 539, 843
BspTNI	GGTCTC	1 cut(s)	774
BsrDI	GCAATG	1 cut(s)	1010
BsrFI	RCCGGY	1 cut(s)	547
BsrI	ACTGG	2 cut(s)	793, 887
BssAI	RCCGGY	1 cut(s)	547
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	3 cut(s)	470, 531, 835
BssSI	CACGAG	1 cut(s)	777
BssT1I	CCWWGG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	777
Bst2UI	CCWGG	1 cut(s)	679
Bst4CI	ACNGT	1 cut(s)	1079
Bst6I	CTCTTC	2 cut(s)	470, 926
BstC8I	GCNNGC	6 cut(s)	334, 366, 549, 723, 790, 948
BstDEI	CTNAG	3 cut(s)	315, 348, 570
BstF5I	GGATG	1 cut(s)	462
BstKTI	GATC	3 cut(s)	473, 534, 838
BstMAI	GTCTC	1 cut(s)	774
BstMBI	GATC	3 cut(s)	470, 531, 835
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 374
BstNI	CCWGG	1 cut(s)	679
BstNSI	RCATGY	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	677
BstV1I	GCAGC	5 cut(s)	71, 556, 628, 694, 853
BstX2I	RGATCY	1 cut(s)	531
BstYI	RGATCY	1 cut(s)	531
Bsu15I	ATCGAT	1 cut(s)	630
BsuI	GTATCC	1 cut(s)	839
BsuRI	GGCC	5 cut(s)	30, 246, 377, 512, 977
BsuTUI	ATCGAT	1 cut(s)	630
BtgZI	GCGATG	1 cut(s)	28
BtrI	CACGTC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	462
BtsI	GCAGTG	1 cut(s)	834
BtsIMutI	CAGTG	4 cut(s)	567, 834, 880, 1084
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	6 cut(s)	334, 366, 549, 723, 790, 948
Cfr10I	RCCGGY	1 cut(s)	547
Cfr13I	GGNCC	4 cut(s)	28, 326, 511, 1043
ClaI	ATCGAT	1 cut(s)	630
CviAII	CATG	4 cut(s)	180, 238, 637, 890
DdeI	CTNAG	3 cut(s)	315, 348, 570
DpnI	GATC	3 cut(s)	472, 533, 837
DpnII	GATC	3 cut(s)	470, 531, 835
DriI	GACNNNNNGTC	1 cut(s)	903
EaeI	YGGCCR	1 cut(s)	244
Eam1104I	CTCTTC	2 cut(s)	470, 926
Eam1105I	GACNNNNNGTC	1 cut(s)	903
EarI	CTCTTC	2 cut(s)	470, 926
Eco130I	CCWWGG	1 cut(s)	81
Eco24I	GRGCYC	1 cut(s)	889
Eco31I	GGTCTC	1 cut(s)	774
Eco47I	GGWCC	2 cut(s)	326, 1043
Eco57I	CTGAAG	1 cut(s)	380
EcoRI	GAATTC	2 cut(s)	104, 563
EcoRII	CCWGG	1 cut(s)	677
EcoT14I	CCWWGG	1 cut(s)	81
EcoT38I	GRGCYC	1 cut(s)	889
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	4 cut(s)	183, 241, 640, 893
FatI	CATG	4 cut(s)	179, 237, 636, 889
FauI	CCCGC	1 cut(s)	266
Fnu4HI	GCNGC	5 cut(s)	60, 545, 642, 683, 867
FokI	GGATG	1 cut(s)	469
FriOI	GRGCYC	1 cut(s)	889
Fsp4HI	GCNGC	5 cut(s)	60, 545, 642, 683, 867
FspBI	CTAG	2 cut(s)	272, 908
GluI	GCNGC	5 cut(s)	60, 545, 642, 683, 867
HaeIII	GGCC	5 cut(s)	30, 246, 377, 512, 977
HapII	CCGG	1 cut(s)	548
Hin1II	CATG	4 cut(s)	183, 241, 640, 893
HincII	GTYRAC	1 cut(s)	204
HindII	GTYRAC	1 cut(s)	204
HindIII	AAGCTT	1 cut(s)	87
HinfI	GANTC	7 cut(s)	295, 434, 738, 851, 877, 917, 1005
HpaI	GTTAAC	1 cut(s)	204
HpaII	CCGG	1 cut(s)	548
HphI	GGTGA	2 cut(s)	64, 957
Hpy166II	GTNNAC	2 cut(s)	185, 204
Hpy188I	TCNGA	2 cut(s)	228, 562
Hpy188III	TCNNGA	5 cut(s)	485, 589, 735, 779, 1002
Hpy8I	GTNNAC	2 cut(s)	185, 204
HpyAV	CCTTC	2 cut(s)	223, 988
HpyCH4III	ACNGT	1 cut(s)	1079
HpyCH4IV	ACGT	3 cut(s)	51, 149, 904
HpyCH4V	TGCA	3 cut(s)	155, 544, 580
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 374
HpyF3I	CTNAG	3 cut(s)	315, 348, 570
HpySE526I	ACGT	3 cut(s)	51, 149, 904
Hsp92II	CATG	4 cut(s)	183, 241, 640, 893
KroI	GCCGGC	1 cut(s)	547
KroNI	GCCGGC	1 cut(s)	549
KspAI	GTTAAC	1 cut(s)	204
Kzo9I	GATC	3 cut(s)	470, 531, 835
LmnI	GCTCC	2 cut(s)	214, 232
Lsp1109I	GCAGC	5 cut(s)	71, 556, 628, 694, 853
LweI	GCATC	1 cut(s)	560
MaeI	CTAG	2 cut(s)	272, 908
MaeII	ACGT	3 cut(s)	51, 149, 904
MaeIII	GTNAC	5 cut(s)	65, 145, 751, 895, 1079
MalI	GATC	3 cut(s)	472, 533, 837
MboI	GATC	3 cut(s)	470, 531, 835
MboII	GAAGA	3 cut(s)	487, 593, 943
MflI	RGATCY	1 cut(s)	531
MhlI	GDGCHC	2 cut(s)	237, 889
MlsI	TGGCCA	1 cut(s)	246
MluCI	AATT	8 cut(s)	104, 174, 440, 563, 728, 1059, 1086, 1090
MluNI	TGGCCA	1 cut(s)	246
Mox20I	TGGCCA	1 cut(s)	246
MroNI	GCCGGC	1 cut(s)	547
MroXI	GAANNNNTTC	2 cut(s)	935, 1107
MscI	TGGCCA	1 cut(s)	246
MseI	TTAA	6 cut(s)	98, 113, 203, 311, 714, 1089
MslI	CAYNNNNRTG	1 cut(s)	240
Msp20I	TGGCCA	1 cut(s)	246
MspI	CCGG	1 cut(s)	548
MspR9I	CCNGG	1 cut(s)	679
MvaI	CCWGG	1 cut(s)	679
MwoI	GCNNNNNNNGC	2 cut(s)	86, 374
NaeI	GCCGGC	1 cut(s)	549
NdeII	GATC	3 cut(s)	470, 531, 835
NgoMIV	GCCGGC	1 cut(s)	547
NlaIII	CATG	4 cut(s)	183, 241, 640, 893
NlaIV	GGNNCC	1 cut(s)	533
NmuCI	GTSAC	3 cut(s)	145, 895, 1079
NspI	RCATGY	1 cut(s)	183
OliI	CACNNNNGTG	1 cut(s)	240
PciI	ACATGT	1 cut(s)	179
PdiI	GCCGGC	1 cut(s)	549
PdmI	GAANNNNTTC	2 cut(s)	935, 1107
PfeI	GAWTC	7 cut(s)	295, 434, 738, 851, 877, 917, 1005
PflMI	CCANNNNNTGG	1 cut(s)	520
PkrI	GCNGC	5 cut(s)	61, 546, 643, 684, 868
PscI	ACATGT	1 cut(s)	179
PshBI	ATTAAT	1 cut(s)	1089
PsiI	TTATAA	1 cut(s)	987
Psp1406I	AACGTT	1 cut(s)	51
Psp6I	CCWGG	1 cut(s)	677
PspGI	CCWGG	1 cut(s)	677
PspN4I	GGNNCC	1 cut(s)	533
PspPI	GGNCC	4 cut(s)	28, 326, 511, 1043
PsuI	RGATCY	1 cut(s)	531
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	6 cut(s)	98, 113, 203, 311, 714, 1089
SatI	GCNGC	5 cut(s)	60, 545, 642, 683, 867
Sau3AI	GATC	3 cut(s)	470, 531, 835
Sau96I	GGNCC	4 cut(s)	28, 326, 511, 1043
ScrFI	CCNGG	1 cut(s)	679
SduI	GDGCHC	2 cut(s)	237, 889
SfaNI	GCATC	1 cut(s)	560
SinI	GGWCC	2 cut(s)	326, 1043
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	587
SmoI	CTYRAG	1 cut(s)	587
Sse9I	AATT	8 cut(s)	104, 174, 440, 563, 728, 1059, 1086, 1090
SsiI	CCGC	2 cut(s)	78, 259
SspMI	CTAG	2 cut(s)	272, 908
StyD4I	CCNGG	1 cut(s)	677
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	1079
TaiI	ACGT	3 cut(s)	54, 152, 907
TaqI	TCGA	3 cut(s)	108, 473, 630
TasI	AATT	8 cut(s)	104, 174, 440, 563, 728, 1059, 1086, 1090
TfiI	GAWTC	7 cut(s)	295, 434, 738, 851, 877, 917, 1005
Tru1I	TTAA	6 cut(s)	98, 113, 203, 311, 714, 1089
Tru9I	TTAA	6 cut(s)	98, 113, 203, 311, 714, 1089
TscAI	CASTG	4 cut(s)	574, 834, 887, 1084
TseFI	GTSAC	3 cut(s)	145, 895, 1079
TseI	GCWGC	5 cut(s)	59, 544, 641, 682, 866
Tsp45I	GTSAC	3 cut(s)	145, 895, 1079
TspDTI	ATGAA	3 cut(s)	798, 928, 1052
TspRI	CASTG	4 cut(s)	574, 834, 887, 1084
Van91I	CCANNNNNTGG	1 cut(s)	520
VpaK11BI	GGWCC	2 cut(s)	326, 1043
VspI	ATTAAT	1 cut(s)	1089
XapI	RAATTY	4 cut(s)	104, 440, 563, 728
XceI	RCATGY	1 cut(s)	183
XmnI	GAANNNNTTC	2 cut(s)	935, 1107
XspI	CTAG	2 cut(s)	272, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.