Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0003541

Physical Location & Seq

Genomic Coordinates Forward (+)

8577827 .. 8580843

Gene Structure 3017 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g10220.11

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAGGTATTGGATGTGAATTTGGCAGAAGTCACGTCTGCGATAGCCCGCATCAGTGAAATCACATGTCCTCCCTATCAAACCGTGCTAAGTCTAATGGAGCAACAGGTTCAGAAGGAACACAATGGTGGTCACCTTTCGACGCGCCTCAAAGGCCTAGACGATGCCTTGTGTGGTGGCATTCCATTTGGGGTTTTGACAGAGTTGGTTGGTCCTGCTGGCATTGGCAAAACACAGTTCTGTCTGAAGCTTGCATTGTTGGCTTCGTTGCCAGAAGCTTATGGAGGTTTAGATGGTCGGGTAATATACATCGATGTAGAATCCAAATTTAGTTCGAGAAGGATGATAGAAATTGGATCAAAGAGTTTCCCAGAAATATTTCACAAGAAAGGAATGGCACAAGAGATGGCTGGTAGGATTCTTGTTATGCGGCCGACATCACTTTCTGAGTTCACTGAGAGTTTGCAACAACTCAAGATCTCACTCCTTCAAAACCAAGTGAAGTTTCTAATTATTGATAGCATGGCTGCTCTTGTTGCAGGGGAACAGGGGCAGGGAGCACCTAGGCAGCATCTACTGGGTTGGCATATTTCCTTTATTAAGTCACTTGCTGAATTTTCACGAATCCCTATTGTTGTTACGAACCAAGTGAGATCTCAAACTCGTGATGAAGCCTGCCAGTATTCTTTTCAAGTGCAAAACAGGGAAAAAGCATTACATGAACATGCAGAATATGATTCTCATCTTGTTGCTGCTTTGGGGATTCACTGGGCTCATGCTGTGACCATACGTCTTGTGCTTGATTCTAAATCTGGGAAGAGGTTCATCAAGCTAGCAAAGTCTCCAATATCACCCCCTCTGGCCTTCGCGTTCAACATAACATCATCTGGAATCTCATTGCTAAGCGATGGTGGAATAGAACTGACAGGACCAGAGATAAACACAATTCATTGCCAAGGACACAGCGACGTAATTAATTTTGACGGGAAAAGGTTTCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

334

Amino Acids

36.53

Weight (kDa)

6.87

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28560 AT2G28560 AT2G28560 AT2G28560 AT2G28560 AT2G28560
fragaria_vesca	FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990
malus_domestica	MD11G1120900.v1.1
prunus_persica	Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1
pyrus_communis	pycom11g10220
rosa_chinensis	RchiOBHm_Chr5g0061521
rosa_laevigata	RLG00000035484
rosa_multiflora	Rmu_co8481717.1_g000001 Rmu_sc0006720.1_g000001 Rmu_sc0010824.1_g000011
rosa_roxburghii	Rroxscaffold_1G00019150
rosa_rugosa	Rorug05G0341400 Rorug05G0341500 Rorug05G0341600 Rorug05G0341700
rosa_samantha	Rh5AG403500 Rh5BG415700 Rh5CG440400 Rh5DG430200
rosa_wichuraiana	Rw5G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	145, 869
AciI	CCGC	2 cut(s)	49, 430
AclWI	GGATC	1 cut(s)	364
AcoI	YGGCCR	1 cut(s)	431
AcsI	RAATTY	3 cut(s)	19, 326, 614
AcuI	CTGAAG	1 cut(s)	266
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	3 cut(s)	491, 692, 874
AhdI	GACNNNNNGTC	1 cut(s)	789
AjiI	CACGTC	1 cut(s)	36
AjuI	GAANNNNNNNTTGG	2 cut(s)	489, 521
AleI	CACNNNNGTG	1 cut(s)	126
AluBI	AGCT	3 cut(s)	250, 278, 832
AluI	AGCT	3 cut(s)	250, 278, 832
Alw21I	GWGCWC	1 cut(s)	562
Alw26I	GTCTC	1 cut(s)	846
AlwI	GGATC	1 cut(s)	364
AoxI	GGCC	3 cut(s)	154, 431, 861
ApeKI	GCWGC	3 cut(s)	527, 568, 752
ApoI	RAATTY	3 cut(s)	19, 326, 614
AseI	ATTAAT	1 cut(s)	975
Asp700I	GAANNNNTTC	2 cut(s)	378, 821
AspA2I	CCTAGG	1 cut(s)	563
AspLEI	GCGC	1 cut(s)	147
AspS9I	GGNCC	2 cut(s)	212, 929
AsuHPI	GGTGA	2 cut(s)	125, 843
AsuNHI	GCTAGC	1 cut(s)	832
AvaII	GGWCC	2 cut(s)	212, 929
AvrII	CCTAGG	1 cut(s)	563
BanII	GRGCYC	1 cut(s)	775
BauI	CACGAG	1 cut(s)	663
Bbv12I	GWGCWC	1 cut(s)	562
BbvI	GCAGC	3 cut(s)	514, 580, 739
BccI	CCATC	3 cut(s)	287, 400, 902
BcoDI	GTCTC	1 cut(s)	846
BfaI	CTAG	3 cut(s)	158, 564, 833
BglI	GCCNNNNNGGC	1 cut(s)	153
BglII	AGATCT	2 cut(s)	477, 653
BisI	GCNGC	4 cut(s)	431, 528, 569, 753
BlnI	CCTAGG	1 cut(s)	563
BlpI	GCTNAGC	1 cut(s)	902
BlsI	GCNGC	4 cut(s)	432, 529, 570, 754
Bme18I	GGWCC	2 cut(s)	212, 929
BmeRI	GACNNNNNGTC	1 cut(s)	789
BmgBI	CACGTC	1 cut(s)	36
BmgT120I	GGNCC	2 cut(s)	212, 929
BmrI	ACTGGG	2 cut(s)	587, 778
BmsI	GCATC	3 cut(s)	60, 154, 580
BmtI	GCTAGC	1 cut(s)	836
BmuI	ACTGGG	2 cut(s)	587, 778
Bpu1102I	GCTNAGC	1 cut(s)	902
BpuEI	CTTGAG	1 cut(s)	458
Bsa29I	ATCGAT	1 cut(s)	312
BsaBI	GATNNNNATC	1 cut(s)	741
BsaJI	CCNNGG	2 cut(s)	563, 955
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bse1I	ACTGG	3 cut(s)	582, 679, 773
Bse3DI	GCAATG	2 cut(s)	896, 949
Bse8I	GATNNNNATC	1 cut(s)	741
BseCI	ATCGAT	1 cut(s)	312
BseDI	CCNNGG	2 cut(s)	563, 955
BseGI	GGATG	2 cut(s)	19, 348
BseJI	GATNNNNATC	1 cut(s)	741
BseMI	GCAATG	2 cut(s)	896, 949
BseMII	CTCAG	2 cut(s)	438, 447
BseNI	ACTGG	3 cut(s)	582, 679, 773
BseX3I	CGGCCG	1 cut(s)	431
BseXI	GCAGC	3 cut(s)	514, 580, 739
Bsh1236I	CGCG	2 cut(s)	145, 869
Bsh1285I	CGRYCG	1 cut(s)	434
BshFI	GGCC	3 cut(s)	156, 433, 863
BshVI	ATCGAT	1 cut(s)	312
BsiEI	CGRYCG	1 cut(s)	434
BsiHKAI	GWGCWC	1 cut(s)	562
BsmAI	GTCTC	1 cut(s)	846
BsmI	GAATGC	1 cut(s)	180
BsnI	GGCC	3 cut(s)	156, 433, 863
Bsp1286I	GDGCHC	2 cut(s)	562, 775
Bsp143I	GATC	3 cut(s)	356, 477, 653
Bsp1720I	GCTNAGC	1 cut(s)	902
BspACI	CCGC	2 cut(s)	49, 430
BspANI	GGCC	3 cut(s)	156, 433, 863
BspCNI	CTCAG	2 cut(s)	439, 448
BspDI	ATCGAT	1 cut(s)	312
BspFNI	CGCG	2 cut(s)	145, 869
BspOI	GCTAGC	1 cut(s)	836
BspPI	GGATC	1 cut(s)	364
BsrDI	GCAATG	2 cut(s)	896, 949
BsrI	ACTGG	3 cut(s)	582, 679, 773
BssECI	CCNNGG	2 cut(s)	563, 955
BssMI	GATC	3 cut(s)	356, 477, 653
BssSI	CACGAG	1 cut(s)	663
BssT1I	CCWWGG	2 cut(s)	563, 955
Bst2BI	CACGAG	1 cut(s)	663
Bst4CI	ACNGT	2 cut(s)	85, 237
Bst6I	CTCTTC	1 cut(s)	812
BstC8I	GCNNGC	5 cut(s)	49, 220, 252, 676, 834
BstDEI	CTNAG	4 cut(s)	89, 447, 456, 902
BstEII	GGTNACC	1 cut(s)	131
BstF5I	GGATG	2 cut(s)	19, 348
BstFNI	CGCG	2 cut(s)	145, 869
BstHHI	GCGC	1 cut(s)	147
BstKTI	GATC	3 cut(s)	359, 480, 656
BstMAI	GTCTC	1 cut(s)	846
BstMBI	GATC	3 cut(s)	356, 477, 653
BstMCI	CGRYCG	1 cut(s)	434
BstMWI	GCNNNNNNNGC	3 cut(s)	153, 260, 536
BstNSI	RCATGY	2 cut(s)	69, 728
BstPI	GGTNACC	1 cut(s)	131
BstUI	CGCG	2 cut(s)	145, 869
BstV1I	GCAGC	3 cut(s)	514, 580, 739
BstX2I	RGATCY	2 cut(s)	477, 653
BstYI	RGATCY	2 cut(s)	477, 653
BstZI	CGGCCG	1 cut(s)	431
Bsu15I	ATCGAT	1 cut(s)	312
BsuRI	GGCC	3 cut(s)	156, 433, 863
BsuTUI	ATCGAT	1 cut(s)	312
BtgZI	GCGATG	1 cut(s)	921
BtrI	CACGTC	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	19, 348
BtsIMutI	CAGTG	3 cut(s)	61, 453, 766
Cac8I	GCNNGC	5 cut(s)	49, 220, 252, 676, 834
CfoI	GCGC	1 cut(s)	147
Cfr13I	GGNCC	2 cut(s)	212, 929
ClaI	ATCGAT	1 cut(s)	312
CseI	GACGC	1 cut(s)	151
CviAII	CATG	5 cut(s)	66, 523, 719, 725, 776
DdeI	CTNAG	4 cut(s)	89, 447, 456, 902
DpnI	GATC	3 cut(s)	358, 479, 655
DpnII	GATC	3 cut(s)	356, 477, 653
DriI	GACNNNNNGTC	1 cut(s)	789
EaeI	YGGCCR	1 cut(s)	431
EagI	CGGCCG	1 cut(s)	431
Eam1104I	CTCTTC	1 cut(s)	812
Eam1105I	GACNNNNNGTC	1 cut(s)	789
EarI	CTCTTC	1 cut(s)	812
EclXI	CGGCCG	1 cut(s)	431
Eco130I	CCWWGG	2 cut(s)	563, 955
Eco147I	AGGCCT	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	775
Eco47I	GGWCC	2 cut(s)	212, 929
Eco52I	CGGCCG	1 cut(s)	431
Eco57I	CTGAAG	1 cut(s)	266
Eco91I	GGTNACC	1 cut(s)	131
EcoO65I	GGTNACC	1 cut(s)	131
EcoT14I	CCWWGG	2 cut(s)	563, 955
EcoT38I	GRGCYC	1 cut(s)	775
ErhI	CCWWGG	2 cut(s)	563, 955
FaeI	CATG	5 cut(s)	69, 526, 722, 728, 779
FatI	CATG	5 cut(s)	65, 522, 718, 724, 775
FauI	CCCGC	1 cut(s)	56
Fnu4HI	GCNGC	4 cut(s)	431, 528, 569, 753
FokI	GGATG	2 cut(s)	26, 355
FriOI	GRGCYC	1 cut(s)	775
Fsp4HI	GCNGC	4 cut(s)	431, 528, 569, 753
FspBI	CTAG	3 cut(s)	158, 564, 833
GlaI	GCGC	1 cut(s)	146
GluI	GCNGC	4 cut(s)	431, 528, 569, 753
HaeIII	GGCC	3 cut(s)	156, 433, 863
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	1 cut(s)	147
Hin1II	CATG	5 cut(s)	69, 526, 722, 728, 779
Hin6I	GCGC	1 cut(s)	145
HinP1I	GCGC	1 cut(s)	145
HindIII	AAGCTT	2 cut(s)	248, 276
HinfI	GANTC	7 cut(s)	320, 418, 624, 737, 763, 803, 891
HphI	GGTGA	2 cut(s)	125, 843
Hpy166II	GTNNAC	1 cut(s)	453
Hpy188I	TCNGA	3 cut(s)	114, 246, 448
Hpy188III	TCNNGA	5 cut(s)	336, 475, 621, 665, 888
Hpy8I	GTNNAC	1 cut(s)	453
Hpy99I	CGWCG	2 cut(s)	145, 971
HpyAV	CCTTC	4 cut(s)	109, 333, 497, 874
HpyCH4III	ACNGT	2 cut(s)	85, 237
HpyCH4IV	ACGT	3 cut(s)	35, 790, 969
HpyCH4V	TGCA	5 cut(s)	254, 466, 539, 697, 728
HpyF10VI	GCNNNNNNNGC	3 cut(s)	153, 260, 536
HpyF3I	CTNAG	4 cut(s)	89, 447, 456, 902
HpySE526I	ACGT	3 cut(s)	35, 790, 969
Hsp92II	CATG	5 cut(s)	69, 526, 722, 728, 779
HspAI	GCGC	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	356, 477, 653
LmnI	GCTCC	2 cut(s)	100, 557
Lsp1109I	GCAGC	3 cut(s)	514, 580, 739
LweI	GCATC	3 cut(s)	60, 154, 580
MaeI	CTAG	3 cut(s)	158, 564, 833
MaeII	ACGT	3 cut(s)	35, 790, 969
MaeIII	GTNAC	5 cut(s)	31, 131, 603, 637, 781
MalI	GATC	3 cut(s)	358, 479, 655
MboI	GATC	3 cut(s)	356, 477, 653
MboII	GAAGA	1 cut(s)	829
MflI	RGATCY	2 cut(s)	477, 653
MhlI	GDGCHC	2 cut(s)	562, 775
MluCI	AATT	8 cut(s)	19, 326, 351, 510, 614, 945, 972, 976
MnlI	CCTC	5 cut(s)	81, 158, 278, 813, 867
MroXI	GAANNNNTTC	2 cut(s)	378, 821
MseI	TTAA	2 cut(s)	600, 975
MslI	CAYNNNNRTG	2 cut(s)	126, 723
Mva1269I	GAATGC	1 cut(s)	180
MvnI	CGCG	2 cut(s)	145, 869
MwoI	GCNNNNNNNGC	3 cut(s)	153, 260, 536
NdeII	GATC	3 cut(s)	356, 477, 653
NheI	GCTAGC	1 cut(s)	832
NlaIII	CATG	5 cut(s)	69, 526, 722, 728, 779
NmuCI	GTSAC	4 cut(s)	31, 131, 603, 781
NspI	RCATGY	2 cut(s)	69, 728
OliI	CACNNNNGTG	1 cut(s)	126
PceI	AGGCCT	1 cut(s)	156
PciI	ACATGT	1 cut(s)	65
PctI	GAATGC	1 cut(s)	180
PdmI	GAANNNNTTC	2 cut(s)	378, 821
PfeI	GAWTC	7 cut(s)	320, 418, 624, 737, 763, 803, 891
PkrI	GCNGC	4 cut(s)	432, 529, 570, 754
PscI	ACATGT	1 cut(s)	65
PshBI	ATTAAT	1 cut(s)	975
PspEI	GGTNACC	1 cut(s)	131
PspPI	GGNCC	2 cut(s)	212, 929
PsuI	RGATCY	2 cut(s)	477, 653
RseI	CAYNNNNRTG	2 cut(s)	126, 723
SaqAI	TTAA	2 cut(s)	600, 975
SatI	GCNGC	4 cut(s)	431, 528, 569, 753
Sau3AI	GATC	3 cut(s)	356, 477, 653
Sau96I	GGNCC	2 cut(s)	212, 929
SduI	GDGCHC	2 cut(s)	562, 775
SfaNI	GCATC	3 cut(s)	60, 154, 580
SinI	GGWCC	2 cut(s)	212, 929
SmiMI	CAYNNNNRTG	2 cut(s)	126, 723
SmlI	CTYRAG	1 cut(s)	473
SmoI	CTYRAG	1 cut(s)	473
Sse9I	AATT	8 cut(s)	19, 326, 351, 510, 614, 945, 972, 976
SseBI	AGGCCT	1 cut(s)	156
SsiI	CCGC	2 cut(s)	49, 430
SspI	AATATT	1 cut(s)	378
SspMI	CTAG	3 cut(s)	158, 564, 833
StuI	AGGCCT	1 cut(s)	156
StyI	CCWWGG	2 cut(s)	563, 955
TaaI	ACNGT	2 cut(s)	85, 237
TaiI	ACGT	3 cut(s)	38, 793, 972
TaqI	TCGA	3 cut(s)	140, 312, 335
TasI	AATT	8 cut(s)	19, 326, 351, 510, 614, 945, 972, 976
TauI	GCSGC	1 cut(s)	433
TfiI	GAWTC	7 cut(s)	320, 418, 624, 737, 763, 803, 891
Tru1I	TTAA	2 cut(s)	600, 975
Tru9I	TTAA	2 cut(s)	600, 975
TscAI	CASTG	3 cut(s)	61, 460, 773
TseFI	GTSAC	4 cut(s)	31, 131, 603, 781
TseI	GCWGC	3 cut(s)	527, 568, 752
Tsp45I	GTSAC	4 cut(s)	31, 131, 603, 781
TspDTI	ATGAA	4 cut(s)	684, 735, 814, 938
TspRI	CASTG	3 cut(s)	61, 460, 773
VpaK11BI	GGWCC	2 cut(s)	212, 929
VspI	ATTAAT	1 cut(s)	975
XapI	RAATTY	3 cut(s)	19, 326, 614
XceI	RCATGY	2 cut(s)	69, 728
XmaJI	CCTAGG	1 cut(s)	563
XmnI	GAANNNNTTC	2 cut(s)	378, 821
XspI	CTAG	3 cut(s)	158, 564, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.