Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010824.1

Orthogroup ID

OG0003541

Physical Location & Seq

Genomic Coordinates Forward (+)

26247 .. 30456

Gene Structure 4210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010824.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

atgggcaaacggggattcccccacccctgcccccgtcccagccccaaatttcccccgcacccccgttccccatctggggatattttcaaatgggggattcctcgccccactcctacaaggaacggggtttctcatttggcgggaagaaagcttcggagcttgagagagaaaatggcgaacaagctcatcaaccagatgggccttcccaaatctatcgccaacgtcttcgcagctcgtaacatcagcaccgccaaggaagctttgtctttgaccgaattcgaattaatggaagtgctagatgtgagtatggcacaagtcacgtctgcgatagctcgcatcagtgaaatcacatgtccaccctaccaaactgttctctctctaatggagcaaagagttcaaatggagcacatgggtggtcacctttcgacgcagctcaaagggctagaccaggccttatgcggtggtatcccatttggggttttgactgagctggttgggcctgctgggattggcaaaacacagttttgcctgaagcttgcattgttggcttcattgccggcatctcgtgggggtttagatggtcatgtaatatatatcgatgtagaatccaagtttagttcaacaaggcaaaagactatagaggattataaaggacatgactctcatcttgttcctgctttggggattcattgggctcatgctgtcaccatacgccttgtgcttgatgctaaatctgggaagaggttcatcaagctggcaaagtctccagtatcacctcctctagccttcccattcaacataacgtcatctggaatttcactgctaactgatgatggaatagagctcaccggaccagagataaacacaattcattgtcaaggtttgtcgctgagaattcttgttgggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

302

Amino Acids

32.67

Weight (kDa)

9.6

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28560 AT2G28560 AT2G28560 AT2G28560 AT2G28560 AT2G28560
fragaria_vesca	FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990
malus_domestica	MD11G1120900.v1.1
prunus_persica	Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1
pyrus_communis	pycom11g10220
rosa_chinensis	RchiOBHm_Chr5g0061521
rosa_laevigata	RLG00000035484
rosa_multiflora	Rmu_co8481717.1_g000001 Rmu_sc0006720.1_g000001 Rmu_sc0010824.1_g000011
rosa_roxburghii	Rroxscaffold_1G00019150
rosa_rugosa	Rorug05G0341400 Rorug05G0341500 Rorug05G0341600 Rorug05G0341700
rosa_samantha	Rh5AG403500 Rh5BG415700 Rh5CG440400 Rh5DG430200
rosa_wichuraiana	Rw5G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
AciI	CCGC	4 cut(s)	56, 140, 249, 459
AcsI	RAATTY	4 cut(s)	47, 275, 813, 894
AcuI	CTGAAG	1 cut(s)	551
AfiI	CCNNNNNNNGG	4 cut(s)	75, 76, 475, 680
AflIII	ACRYGT	1 cut(s)	350
AgsI	TTSAA	4 cut(s)	88, 398, 621, 796
AjiI	CACGTC	1 cut(s)	321
AjnI	CCWGG	1 cut(s)	447
AleI	CACNNNNGTG	1 cut(s)	411
Alw21I	GWGCWC	2 cut(s)	408, 846
Alw26I	GTCTC	1 cut(s)	768
AoxI	GGCC	3 cut(s)	199, 450, 497
ApeKI	GCWGC	2 cut(s)	230, 430
ApoI	RAATTY	4 cut(s)	47, 275, 813, 894
AseI	ATTAAT	1 cut(s)	284
Asp700I	GAANNNNTTC	1 cut(s)	743
AspS9I	GGNCC	3 cut(s)	199, 497, 851
AsuHPI	GGTGA	4 cut(s)	410, 697, 765, 838
AsuII	TTCGAA	1 cut(s)	279
AvaII	GGWCC	1 cut(s)	851
BanII	GRGCYC	2 cut(s)	697, 846
BauI	CACGAG	1 cut(s)	564
BbsI	GAAGAC	1 cut(s)	217
Bbv12I	GWGCWC	2 cut(s)	408, 846
BbvI	GCAGC	2 cut(s)	242, 442
BccI	CCATC	4 cut(s)	79, 190, 572, 827
BciT130I	CCWGG	1 cut(s)	449
BciVI	GTATCC	1 cut(s)	476
BcoDI	GTCTC	1 cut(s)	768
BfaI	CTAG	3 cut(s)	296, 443, 782
BfmI	CTRYAG	1 cut(s)	636
BfuI	GTATCC	1 cut(s)	476
BisI	GCNGC	2 cut(s)	231, 431
BlsI	GCNGC	2 cut(s)	232, 432
Bme1390I	CCNGG	1 cut(s)	449
Bme18I	GGWCC	1 cut(s)	851
BmgBI	CACGTC	1 cut(s)	321
BmgT120I	GGNCC	3 cut(s)	199, 497, 851
BmrFI	CCNGG	1 cut(s)	449
BmsI	GCATC	3 cut(s)	345, 569, 715
BpiI	GAAGAC	1 cut(s)	217
BpmI	CTGGAG	1 cut(s)	750
Bpu14I	TTCGAA	1 cut(s)	279
BpuEI	CTTGAG	1 cut(s)	181
Bsa29I	ATCGAT	1 cut(s)	597
BsaJI	CCNNGG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	848
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 76, 475, 680
Bse118I	RCCGGY	1 cut(s)	556
Bse1I	ACTGG	1 cut(s)	767
Bse3DI	GCAATG	1 cut(s)	551
BseBI	CCWGG	1 cut(s)	449
BseCI	ATCGAT	1 cut(s)	597
BseDI	CCNNGG	1 cut(s)	252
BseLI	CCNNNNNNNGG	4 cut(s)	75, 76, 475, 680
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	2 cut(s)	477, 881
BseNI	ACTGG	1 cut(s)	767
BseRI	GAGGAG	1 cut(s)	768
BseXI	GCAGC	2 cut(s)	242, 442
BseYI	CCCAGC	2 cut(s)	38, 503
BshFI	GGCC	3 cut(s)	201, 452, 499
BshVI	ATCGAT	1 cut(s)	597
BsiHKAI	GWGCWC	2 cut(s)	408, 846
BsiSI	CCGG	2 cut(s)	557, 849
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	4 cut(s)	75, 76, 475, 680
BsmAI	GTCTC	1 cut(s)	768
BsmFI	GGGAC	1 cut(s)	21
BsnI	GGCC	3 cut(s)	201, 452, 499
Bsp119I	TTCGAA	1 cut(s)	279
Bsp1286I	GDGCHC	3 cut(s)	408, 697, 846
BspACI	CCGC	4 cut(s)	56, 140, 249, 459
BspANI	GGCC	3 cut(s)	201, 452, 499
BspCNI	CTCAG	2 cut(s)	478, 882
BspDI	ATCGAT	1 cut(s)	597
BspT104I	TTCGAA	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	551
BsrFI	RCCGGY	1 cut(s)	556
BsrI	ACTGG	1 cut(s)	767
BssAI	RCCGGY	1 cut(s)	556
BssECI	CCNNGG	1 cut(s)	252
BssSI	CACGAG	1 cut(s)	564
BssT1I	CCWWGG	1 cut(s)	252
Bst2BI	CACGAG	1 cut(s)	564
Bst2UI	CCWGG	1 cut(s)	449
Bst4CI	ACNGT	2 cut(s)	370, 522
Bst6I	CTCTTC	1 cut(s)	734
BstBI	TTCGAA	1 cut(s)	279
BstC8I	GCNNGC	5 cut(s)	334, 501, 537, 558, 756
BstDEI	CTNAG	2 cut(s)	486, 890
BstEII	GGTNACC	1 cut(s)	416
BstMAI	GTCTC	1 cut(s)	768
BstMWI	GCNNNNNNNGC	4 cut(s)	257, 439, 496, 545
BstNI	CCWGG	1 cut(s)	449
BstNSI	RCATGY	1 cut(s)	354
BstPI	GGTNACC	1 cut(s)	416
BstSCI	CCNGG	1 cut(s)	447
BstSFI	CTRYAG	1 cut(s)	636
BstV1I	GCAGC	2 cut(s)	242, 442
BstV2I	GAAGAC	1 cut(s)	217
Bsu15I	ATCGAT	1 cut(s)	597
BsuI	GTATCC	1 cut(s)	476
BsuRI	GGCC	3 cut(s)	201, 452, 499
BsuTUI	ATCGAT	1 cut(s)	597
BtrI	CACGTC	1 cut(s)	321
BtsI	GCAGTG	1 cut(s)	818
BtsIMutI	CAGTG	2 cut(s)	346, 818
Cac8I	GCNNGC	5 cut(s)	334, 501, 537, 558, 756
Cfr10I	RCCGGY	1 cut(s)	556
Cfr13I	GGNCC	3 cut(s)	199, 497, 851
ClaI	ATCGAT	1 cut(s)	597
CseI	GACGC	1 cut(s)	436
CviAII	CATG	5 cut(s)	351, 409, 584, 656, 698
DdeI	CTNAG	2 cut(s)	486, 890
Eam1104I	CTCTTC	1 cut(s)	734
EarI	CTCTTC	1 cut(s)	734
Ecl136II	GAGCTC	1 cut(s)	844
Eco130I	CCWWGG	1 cut(s)	252
Eco147I	AGGCCT	1 cut(s)	452
Eco24I	GRGCYC	2 cut(s)	697, 846
Eco47I	GGWCC	1 cut(s)	851
Eco53kI	GAGCTC	1 cut(s)	844
Eco57I	CTGAAG	1 cut(s)	551
Eco91I	GGTNACC	1 cut(s)	416
EcoICRI	GAGCTC	1 cut(s)	844
EcoO65I	GGTNACC	1 cut(s)	416
EcoRI	GAATTC	2 cut(s)	275, 894
EcoRII	CCWGG	1 cut(s)	447
EcoT14I	CCWWGG	1 cut(s)	252
EcoT38I	GRGCYC	2 cut(s)	697, 846
ErhI	CCWWGG	1 cut(s)	252
FaeI	CATG	5 cut(s)	354, 412, 587, 659, 701
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	5 cut(s)	350, 408, 583, 655, 697
FauI	CCCGC	2 cut(s)	63, 133
Fnu4HI	GCNGC	2 cut(s)	231, 431
FriOI	GRGCYC	2 cut(s)	697, 846
Fsp4HI	GCNGC	2 cut(s)	231, 431
FspBI	CTAG	3 cut(s)	296, 443, 782
GluI	GCNGC	2 cut(s)	231, 431
GsaI	CCCAGC	2 cut(s)	42, 507
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	3 cut(s)	201, 452, 499
HapII	CCGG	2 cut(s)	557, 849
HgaI	GACGC	1 cut(s)	436
Hin1II	CATG	5 cut(s)	354, 412, 587, 659, 701
HindIII	AAGCTT	3 cut(s)	149, 258, 533
HinfI	GANTC	5 cut(s)	15, 97, 605, 659, 685
HpaII	CCGG	2 cut(s)	557, 849
HphI	GGTGA	4 cut(s)	410, 697, 765, 838
Hpy166II	GTNNAC	1 cut(s)	356
Hpy188I	TCNGA	1 cut(s)	156
Hpy188III	TCNNGA	1 cut(s)	810
Hpy8I	GTNNAC	1 cut(s)	356
Hpy99I	CGWCG	1 cut(s)	430
HpyAV	CCTTC	2 cut(s)	212, 796
HpyCH4III	ACNGT	2 cut(s)	370, 522
HpyCH4IV	ACGT	3 cut(s)	222, 320, 803
HpyCH4V	TGCA	1 cut(s)	539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	257, 439, 496, 545
HpyF3I	CTNAG	2 cut(s)	486, 890
HpySE526I	ACGT	3 cut(s)	222, 320, 803
Hsp92II	CATG	5 cut(s)	354, 412, 587, 659, 701
KroI	GCCGGC	1 cut(s)	556
KroNI	GCCGGC	1 cut(s)	558
LmnI	GCTCC	3 cut(s)	156, 385, 403
Lsp1109I	GCAGC	2 cut(s)	242, 442
LweI	GCATC	3 cut(s)	345, 569, 715
MaeI	CTAG	3 cut(s)	296, 443, 782
MaeII	ACGT	3 cut(s)	222, 320, 803
MaeIII	GTNAC	4 cut(s)	236, 316, 416, 703
MboII	GAAGA	3 cut(s)	156, 217, 751
MhlI	GDGCHC	3 cut(s)	408, 697, 846
MluCI	AATT	6 cut(s)	47, 275, 281, 813, 867, 894
MlyI	GAGTC	1 cut(s)	653
MnlI	CCTC	5 cut(s)	111, 634, 735, 786, 789
MroNI	GCCGGC	1 cut(s)	556
MroXI	GAANNNNTTC	1 cut(s)	743
MseI	TTAA	1 cut(s)	284
MslI	CAYNNNNRTG	1 cut(s)	411
MspI	CCGG	2 cut(s)	557, 849
MspR9I	CCNGG	1 cut(s)	449
MvaI	CCWGG	1 cut(s)	449
MwoI	GCNNNNNNNGC	4 cut(s)	257, 439, 496, 545
NaeI	GCCGGC	1 cut(s)	558
NgoMIV	GCCGGC	1 cut(s)	556
NlaIII	CATG	5 cut(s)	354, 412, 587, 659, 701
NmuCI	GTSAC	3 cut(s)	316, 416, 703
NspI	RCATGY	1 cut(s)	354
NspV	TTCGAA	1 cut(s)	279
OliI	CACNNNNGTG	1 cut(s)	411
PceI	AGGCCT	1 cut(s)	452
PciI	ACATGT	1 cut(s)	350
PdiI	GCCGGC	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	743
PfeI	GAWTC	4 cut(s)	15, 97, 605, 685
PkrI	GCNGC	2 cut(s)	232, 432
PleI	GAGTC	1 cut(s)	653
PpsI	GAGTC	1 cut(s)	653
PscI	ACATGT	1 cut(s)	350
PshBI	ATTAAT	1 cut(s)	284
PsiI	TTATAA	1 cut(s)	648
Psp124BI	GAGCTC	1 cut(s)	846
Psp6I	CCWGG	1 cut(s)	447
PspEI	GGTNACC	1 cut(s)	416
PspFI	CCCAGC	2 cut(s)	38, 503
PspGI	CCWGG	1 cut(s)	447
PspPI	GGNCC	3 cut(s)	199, 497, 851
RseI	CAYNNNNRTG	1 cut(s)	411
SacI	GAGCTC	1 cut(s)	846
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	2 cut(s)	231, 431
Sau96I	GGNCC	3 cut(s)	199, 497, 851
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	1 cut(s)	449
SduI	GDGCHC	3 cut(s)	408, 697, 846
SfaNI	GCATC	3 cut(s)	345, 569, 715
SfcI	CTRYAG	1 cut(s)	636
SfuI	TTCGAA	1 cut(s)	279
SinI	GGWCC	1 cut(s)	851
SmiMI	CAYNNNNRTG	1 cut(s)	411
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	6 cut(s)	47, 275, 281, 813, 867, 894
SseBI	AGGCCT	1 cut(s)	452
SsiI	CCGC	4 cut(s)	56, 140, 249, 459
SspMI	CTAG	3 cut(s)	296, 443, 782
SstI	GAGCTC	1 cut(s)	846
StuI	AGGCCT	1 cut(s)	452
StyD4I	CCNGG	1 cut(s)	447
StyI	CCWWGG	1 cut(s)	252
TaaI	ACNGT	2 cut(s)	370, 522
TaiI	ACGT	3 cut(s)	225, 323, 806
TaqI	TCGA	3 cut(s)	279, 425, 597
TaqII	GACCGA	1 cut(s)	287
TasI	AATT	6 cut(s)	47, 275, 281, 813, 867, 894
TfiI	GAWTC	4 cut(s)	15, 97, 605, 685
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TscAI	CASTG	2 cut(s)	346, 825
TseFI	GTSAC	3 cut(s)	316, 416, 703
TseI	GCWGC	2 cut(s)	230, 430
Tsp45I	GTSAC	3 cut(s)	316, 416, 703
TspDTI	ATGAA	4 cut(s)	540, 677, 736, 860
TspRI	CASTG	2 cut(s)	346, 825
VpaK11BI	GGWCC	1 cut(s)	851
VspI	ATTAAT	1 cut(s)	284
XapI	RAATTY	4 cut(s)	47, 275, 813, 894
XceI	RCATGY	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	743
XspI	CTAG	3 cut(s)	296, 443, 782

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.