Rh5AG403500

DNA repair protein RAD51 homolog

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Reverse (-)
69793997 .. 69804760
10764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG403500.1

Sequence Viewer

Length: 1119 bp
ATGAAAACCCACAACAGTTATATAAATGAAAACACAAAGCACAAGGAAAGAGATCCTGCAAAACAGAGTGATCATTCTGGGCGGTGGCAGAGGCGGAGGAAGAGCACGGCGGCACAGAGAAGAGGGAAGGCGGTGTGGGTTGGGAGGAGGCGATCACTCTGGGCCGACGAGGCTCTATGGGTGCCCAAATCAGATCTTGTCCTACCAGGCGTCGGCGCGTGGGTTTCTGCAAGATGGCAACGAGGCTGCGTTGGACTCGTCGGAGGTCAGAACTATCAAAAGCAAAGCAAAGCTCTGTCTGATGCTCTTGGTCAATTCCCAAGGAAGAAGCCTGTAGGGCTGGATTGCACCAACTGGCTTTTTGTGGTTCGTGAGGCTGGGAAAGCTATGTCTGGCTGTTCTGAGGGCAAGAGGGTTTCTCATTTGGCGGGAAGAAAGCTTCGGAGCTTGAGAGAGAAAATGGCGAACAAGCTCATCAGCCAGATGGGCCTTCCCAAATCTATCGCCAACGTCTTCGCAGCTCGTAACATCACCACCGCCAAGGAAGCTTTGTCTTTGACCGAATTCGAATTAATGGAAGTGCTAGATGTGAGTATGGCACAAGTCACGTCTGCGATAGCTCGCATCAGTGAAATCACATGTCCACCCTACCAAACTGCGCTCTCTCTAATGGAGCAAAGAGTTCAAATGGAGCACATGGGTGGTCACCTTTCGACGCAGCTCAAAGGGCTAGACCAGGCCTTATGCGGTGGTATCCCATTTGGGGTTTTGACTGAACTGGTTGGGCCTGCTGGGATTGGCAAAACACAGTTTTGCCTGAAGCTTGCATTGTTGGCTTCATTGCCGGCATCTTGTGGGGGTTTAGATGGTCATGTAATATATATCGATGTAGAATCCAAGTTTAGTTCAACAAGGCTGATAGAAATTGGAGTAAAGAGCTTCCCAGAAATATTTCACACAAAAGGACTGGCGCAAGAGATGGCTGGTAGGATCCTTGTTTTGCGGCCTACATCACTTTCTGAATTCACTGAGAGTTTGCAACAAATCAAGATTTCACTCCTTCAAAACCAAGTGAAGTTGCTAATCATTGATAGCATGGCCGCCCTCGTTTCAGGGTAA

Protein Analysis

372

Amino Acids

40.8

Weight (kDa)

9.81

Isoelectric Point (pI)

50.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHH_XRCC3_RpoA PF26169 159 - 212 1.1e-20 XRCC3/RpoA-like, helix-hairpin-helix domain
Rad51 PF08423 237 - 369 2.8e-17 Rad51
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 181
AccII CGCG 1 cut(s) 218
AciI CCGC 9 cut(s) 82, 94, 110, 131, 428, 537, 747, 1003, 1101
AclWI GGATC 3 cut(s) 47, 985, 998
AcoI YGGCCR 1 cut(s) 1098
AcsI RAATTY 2 cut(s) 563, 1022
AcuI CTGAAG 1 cut(s) 839
AcyI GRCGYC 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 212, 763
AflIII ACRYGT 1 cut(s) 638
AgsI TTSAA 3 cut(s) 686, 909, 1064
AjiI CACGTC 1 cut(s) 609
AjnI CCWGG 2 cut(s) 205, 735
AleI CACNNNNGTG 1 cut(s) 699
Alw21I GWGCWC 2 cut(s) 107, 696
AlwI GGATC 3 cut(s) 47, 985, 998
AoxI GGCC 6 cut(s) 162, 487, 738, 785, 1004, 1098
ApeKI GCWGC 3 cut(s) 246, 518, 718
ApoI RAATTY 2 cut(s) 563, 1022
AseI ATTAAT 1 cut(s) 572
Asp700I GAANNNNTTC 1 cut(s) 951
AspLEI GCGC 3 cut(s) 218, 661, 973
AspS9I GGNCC 3 cut(s) 162, 487, 785
AsuHPI GGTGA 2 cut(s) 523, 698
AsuII TTCGAA 1 cut(s) 567
BaeGI GKGCMC 1 cut(s) 186
BamHI GGATCC 1 cut(s) 990
BanI GGYRCC 1 cut(s) 181
BbsI GAAGAC 1 cut(s) 505
Bbv12I GWGCWC 2 cut(s) 107, 696
BbvI GCAGC 3 cut(s) 233, 530, 730
BccI CCATC 4 cut(s) 228, 478, 860, 973
BceAI ACGGC 1 cut(s) 123
BciT130I CCWGG 2 cut(s) 207, 737
BciVI GTATCC 1 cut(s) 764
BclI TGATCA 1 cut(s) 70
BfaI CTAG 2 cut(s) 584, 731
BfmI CTRYAG 1 cut(s) 333
BfuI GTATCC 1 cut(s) 764
BglI GCCNNNNNGGC 3 cut(s) 170, 337, 486
BglII AGATCT 1 cut(s) 193
BisI GCNGC 6 cut(s) 111, 247, 519, 719, 1004, 1101
BlsI GCNGC 6 cut(s) 112, 248, 520, 720, 1005, 1102
Bme1390I CCNGG 2 cut(s) 207, 737
BmgBI CACGTC 1 cut(s) 609
BmgT120I GGNCC 3 cut(s) 162, 487, 785
BmiI GGNNCC 2 cut(s) 183, 992
BmrFI CCNGG 2 cut(s) 207, 737
BmsI GCATC 3 cut(s) 292, 633, 857
BpiI GAAGAC 1 cut(s) 505
BplI GAGNNNNNCTC 2 cut(s) 403, 435
Bpu14I TTCGAA 1 cut(s) 567
BpuEI CTTGAG 1 cut(s) 469
Bsa29I ATCGAT 1 cut(s) 885
BsaHI GRCGYC 1 cut(s) 210
BsaJI CCNNGG 2 cut(s) 320, 540
Bsc4I CCNNNNNNNGG 2 cut(s) 212, 763
Bse118I RCCGGY 1 cut(s) 844
Bse1I ACTGG 3 cut(s) 359, 783, 972
Bse3DI GCAATG 1 cut(s) 839
BseBI CCWGG 2 cut(s) 207, 737
BseCI ATCGAT 1 cut(s) 885
BseDI CCNNGG 2 cut(s) 320, 540
BseLI CCNNNNNNNGG 2 cut(s) 212, 763
BseMI GCAATG 1 cut(s) 839
BseMII CTCAG 2 cut(s) 393, 1020
BseNI ACTGG 3 cut(s) 359, 783, 972
BseRI GAGGAG 1 cut(s) 160
BseSI GKGCMC 1 cut(s) 186
BseXI GCAGC 3 cut(s) 233, 530, 730
BseYI CCCAGC 2 cut(s) 377, 791
Bsh1236I CGCG 1 cut(s) 218
BshFI GGCC 6 cut(s) 164, 489, 740, 787, 1006, 1100
BshNI GGYRCC 1 cut(s) 181
BshVI ATCGAT 1 cut(s) 885
BsiHKAI GWGCWC 2 cut(s) 107, 696
BsiSI CCGG 1 cut(s) 845
BslI CCNNNNNNNGG 2 cut(s) 212, 763
BsnI GGCC 6 cut(s) 164, 489, 740, 787, 1006, 1100
Bsp119I TTCGAA 1 cut(s) 567
Bsp1286I GDGCHC 3 cut(s) 107, 186, 696
Bsp143I GATC 5 cut(s) 52, 70, 152, 193, 990
BspACI CCGC 9 cut(s) 82, 94, 110, 131, 428, 537, 747, 1003, 1101
BspANI GGCC 6 cut(s) 164, 489, 740, 787, 1006, 1100
BspCNI CTCAG 2 cut(s) 394, 1021
BspDI ATCGAT 1 cut(s) 885
BspFNI CGCG 1 cut(s) 218
BspLI GGNNCC 2 cut(s) 183, 992
BspPI GGATC 3 cut(s) 47, 985, 998
BspQI GCTCTTC 1 cut(s) 95
BspT104I TTCGAA 1 cut(s) 567
BspT107I GGYRCC 1 cut(s) 181
BsrDI GCAATG 1 cut(s) 839
BsrFI RCCGGY 1 cut(s) 844
BsrI ACTGG 3 cut(s) 359, 783, 972
BssAI RCCGGY 1 cut(s) 844
BssECI CCNNGG 2 cut(s) 320, 540
BssMI GATC 5 cut(s) 52, 70, 152, 193, 990
BssNI GRCGYC 1 cut(s) 210
BssT1I CCWWGG 2 cut(s) 320, 540
Bst2UI CCWGG 2 cut(s) 207, 737
Bst4CI ACNGT 2 cut(s) 17, 810
Bst6I CTCTTC 2 cut(s) 95, 115
BstACI GRCGYC 1 cut(s) 210
BstBI TTCGAA 1 cut(s) 567
BstC8I GCNNGC 4 cut(s) 622, 789, 825, 846
BstDEI CTNAG 2 cut(s) 402, 1029
BstEII GGTNACC 1 cut(s) 704
BstFNI CGCG 1 cut(s) 218
BstHHI GCGC 3 cut(s) 218, 661, 973
BstKTI GATC 5 cut(s) 55, 73, 155, 196, 993
BstMBI GATC 5 cut(s) 52, 70, 152, 193, 990
BstMWI GCNNNNNNNGC 7 cut(s) 170, 337, 383, 486, 545, 727, 833
BstNI CCWGG 2 cut(s) 207, 737
BstNSI RCATGY 1 cut(s) 642
BstPI GGTNACC 1 cut(s) 704
BstSCI CCNGG 2 cut(s) 205, 735
BstSFI CTRYAG 1 cut(s) 333
BstSLI GKGCMC 1 cut(s) 186
BstUI CGCG 1 cut(s) 218
BstV1I GCAGC 3 cut(s) 233, 530, 730
BstV2I GAAGAC 1 cut(s) 505
BstX2I RGATCY 3 cut(s) 52, 193, 990
BstYI RGATCY 3 cut(s) 52, 193, 990
Bsu15I ATCGAT 1 cut(s) 885
BsuI GTATCC 1 cut(s) 764
BsuRI GGCC 6 cut(s) 164, 489, 740, 787, 1006, 1100
BsuTUI ATCGAT 1 cut(s) 885
BtrI CACGTC 1 cut(s) 609
BtsIMutI CAGTG 2 cut(s) 634, 1026
Cac8I GCNNGC 4 cut(s) 622, 789, 825, 846
CfoI GCGC 3 cut(s) 218, 661, 973
Cfr10I RCCGGY 1 cut(s) 844
Cfr13I GGNCC 3 cut(s) 162, 487, 785
ClaI ATCGAT 1 cut(s) 885
CseI GACGC 2 cut(s) 199, 724
CviAII CATG 4 cut(s) 639, 697, 872, 1096
DdeI CTNAG 2 cut(s) 402, 1029
DpnI GATC 5 cut(s) 54, 72, 154, 195, 992
DpnII GATC 5 cut(s) 52, 70, 152, 193, 990
EaeI YGGCCR 1 cut(s) 1098
Eam1104I CTCTTC 2 cut(s) 95, 115
EarI CTCTTC 2 cut(s) 95, 115
EciI GGCGGA 1 cut(s) 109
Eco130I CCWWGG 2 cut(s) 320, 540
Eco147I AGGCCT 1 cut(s) 740
Eco57I CTGAAG 1 cut(s) 839
Eco91I GGTNACC 1 cut(s) 704
EcoO65I GGTNACC 1 cut(s) 704
EcoRI GAATTC 2 cut(s) 563, 1022
EcoRII CCWGG 2 cut(s) 205, 735
EcoT14I CCWWGG 2 cut(s) 320, 540
ErhI CCWWGG 2 cut(s) 320, 540
FaeI CATG 4 cut(s) 642, 700, 875, 1099
FatI CATG 4 cut(s) 638, 696, 871, 1095
FauI CCCGC 1 cut(s) 421
FbaI TGATCA 1 cut(s) 70
Fnu4HI GCNGC 6 cut(s) 111, 247, 519, 719, 1004, 1101
Fsp4HI GCNGC 6 cut(s) 111, 247, 519, 719, 1004, 1101
FspBI CTAG 2 cut(s) 584, 731
GlaI GCGC 3 cut(s) 217, 660, 972
GluI GCNGC 6 cut(s) 111, 247, 519, 719, 1004, 1101
GsaI CCCAGC 2 cut(s) 381, 795
HaeIII GGCC 6 cut(s) 164, 489, 740, 787, 1006, 1100
HapII CCGG 1 cut(s) 845
HgaI GACGC 2 cut(s) 199, 724
HhaI GCGC 3 cut(s) 218, 661, 973
Hin1I GRCGYC 1 cut(s) 210
Hin1II CATG 4 cut(s) 642, 700, 875, 1099
Hin6I GCGC 3 cut(s) 216, 659, 971
HinP1I GCGC 3 cut(s) 216, 659, 971
HindIII AAGCTT 3 cut(s) 437, 546, 821
HinfI GANTC 2 cut(s) 255, 893
HpaII CCGG 1 cut(s) 845
HphI GGTGA 2 cut(s) 523, 698
Hpy166II GTNNAC 1 cut(s) 644
Hpy188I TCNGA 7 cut(s) 193, 263, 270, 301, 403, 444, 1021
Hpy188III TCNNGA 2 cut(s) 371, 1048
Hpy8I GTNNAC 1 cut(s) 644
Hpy99I CGWCG 4 cut(s) 170, 215, 263, 718
HpyAV CCTTC 3 cut(s) 121, 500, 1070
HpyCH4III ACNGT 2 cut(s) 17, 810
HpyCH4IV ACGT 2 cut(s) 510, 608
HpyCH4V TGCA 5 cut(s) 59, 230, 348, 827, 1039
HpyF10VI GCNNNNNNNGC 7 cut(s) 170, 337, 383, 486, 545, 727, 833
HpyF3I CTNAG 2 cut(s) 402, 1029
HpySE526I ACGT 2 cut(s) 510, 608
Hsp92I GRCGYC 1 cut(s) 210
Hsp92II CATG 4 cut(s) 642, 700, 875, 1099
HspAI GCGC 3 cut(s) 216, 659, 971
KroI GCCGGC 1 cut(s) 844
KroNI GCCGGC 1 cut(s) 846
Ksp22I TGATCA 1 cut(s) 70
Kzo9I GATC 5 cut(s) 52, 70, 152, 193, 990
LguI GCTCTTC 1 cut(s) 95
LmnI GCTCC 3 cut(s) 444, 673, 691
Lsp1109I GCAGC 3 cut(s) 233, 530, 730
LweI GCATC 3 cut(s) 292, 633, 857
MaeI CTAG 2 cut(s) 584, 731
MaeII ACGT 2 cut(s) 510, 608
MaeIII GTNAC 3 cut(s) 524, 604, 704
MalI GATC 5 cut(s) 54, 72, 154, 195, 992
MboI GATC 5 cut(s) 52, 70, 152, 193, 990
MboII GAAGA 5 cut(s) 112, 132, 337, 444, 505
MflI RGATCY 3 cut(s) 52, 193, 990
MhlI GDGCHC 3 cut(s) 107, 186, 696
MluCI AATT 5 cut(s) 314, 563, 569, 924, 1022
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 2 cut(s) 232, 241
MroNI GCCGGC 1 cut(s) 844
MroXI GAANNNNTTC 1 cut(s) 951
MseI TTAA 1 cut(s) 572
MslI CAYNNNNRTG 1 cut(s) 699
MspI CCGG 1 cut(s) 845
MspR9I CCNGG 2 cut(s) 207, 737
MvaI CCWGG 2 cut(s) 207, 737
MvnI CGCG 1 cut(s) 218
MwoI GCNNNNNNNGC 7 cut(s) 170, 337, 383, 486, 545, 727, 833
NaeI GCCGGC 1 cut(s) 846
NdeII GATC 5 cut(s) 52, 70, 152, 193, 990
NgoMIV GCCGGC 1 cut(s) 844
NlaIII CATG 4 cut(s) 642, 700, 875, 1099
NlaIV GGNNCC 2 cut(s) 183, 992
NmuCI GTSAC 2 cut(s) 604, 704
NspI RCATGY 1 cut(s) 642
NspV TTCGAA 1 cut(s) 567
OliI CACNNNNGTG 1 cut(s) 699
PceI AGGCCT 1 cut(s) 740
PciI ACATGT 1 cut(s) 638
PciSI GCTCTTC 1 cut(s) 95
PdiI GCCGGC 1 cut(s) 846
PdmI GAANNNNTTC 1 cut(s) 951
PfeI GAWTC 1 cut(s) 893
PkrI GCNGC 6 cut(s) 112, 248, 520, 720, 1005, 1102
PleI GAGTC 1 cut(s) 249
PpsI GAGTC 1 cut(s) 249
PscI ACATGT 1 cut(s) 638
PshBI ATTAAT 1 cut(s) 572
Psp6I CCWGG 2 cut(s) 205, 735
PspEI GGTNACC 1 cut(s) 704
PspFI CCCAGC 2 cut(s) 377, 791
PspGI CCWGG 2 cut(s) 205, 735
PspN4I GGNNCC 2 cut(s) 183, 992
PspPI GGNCC 3 cut(s) 162, 487, 785
PsuI RGATCY 3 cut(s) 52, 193, 990
RseI CAYNNNNRTG 1 cut(s) 699
SapI GCTCTTC 1 cut(s) 95
SaqAI TTAA 1 cut(s) 572
SatI GCNGC 6 cut(s) 111, 247, 519, 719, 1004, 1101
Sau3AI GATC 5 cut(s) 52, 70, 152, 193, 990
Sau96I GGNCC 3 cut(s) 162, 487, 785
SchI GAGTC 1 cut(s) 249
ScrFI CCNGG 2 cut(s) 207, 737
SduI GDGCHC 3 cut(s) 107, 186, 696
SfaNI GCATC 3 cut(s) 292, 633, 857
SfcI CTRYAG 1 cut(s) 333
SfuI TTCGAA 1 cut(s) 567
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 1 cut(s) 448
SmoI CTYRAG 1 cut(s) 448
Sse9I AATT 5 cut(s) 314, 563, 569, 924, 1022
SseBI AGGCCT 1 cut(s) 740
SsiI CCGC 9 cut(s) 82, 94, 110, 131, 428, 537, 747, 1003, 1101
SspI AATATT 1 cut(s) 951
SspMI CTAG 2 cut(s) 584, 731
StuI AGGCCT 1 cut(s) 740
StyD4I CCNGG 2 cut(s) 205, 735
StyI CCWWGG 2 cut(s) 320, 540
TaaI ACNGT 2 cut(s) 17, 810
TaiI ACGT 2 cut(s) 513, 611
TaqI TCGA 3 cut(s) 567, 713, 885
TaqII GACCGA 1 cut(s) 575
TasI AATT 5 cut(s) 314, 563, 569, 924, 1022
TauI GCSGC 3 cut(s) 113, 1006, 1103
TfiI GAWTC 1 cut(s) 893
Tru1I TTAA 1 cut(s) 572
Tru9I TTAA 1 cut(s) 572
TscAI CASTG 2 cut(s) 634, 1033
TseFI GTSAC 2 cut(s) 604, 704
TseI GCWGC 3 cut(s) 246, 518, 718
Tsp45I GTSAC 2 cut(s) 604, 704
TspDTI ATGAA 3 cut(s) 17, 42, 828
TspRI CASTG 2 cut(s) 634, 1033
VspI ATTAAT 1 cut(s) 572
XapI RAATTY 2 cut(s) 563, 1022
XceI RCATGY 1 cut(s) 642
XmnI GAANNNNTTC 1 cut(s) 951
XspI CTAG 2 cut(s) 584, 731
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.