Rw5G037930

DNA repair protein RAD51 homolog

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
Physical Location & Seq
Reverse (-)
66908131 .. 66912155
4025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G037930.1

Sequence Viewer

Length: 1110 bp
ATGGCGAACAAGCTCATCAACCAGATGGGCCTTCCCAAATCTATCGCCAACGTCTTCGCAGCTCGTAACATCACCACCGCCAAGGAAGCTTTGTCTTTGACCGAATTCGAATTAATGGAAGTGCTAGATGTGAGTATGGCACAAGTCACGTCTGCGATAGCTCGCATCAGTGAAATCACATGTCCACCCTACCAAACTGCGCTCTCTCTAATGGAGCACATGGGTGGTCACCTTTCGACGCAGCTCAAAGGGCTAGACCAGGCCTTATGCGGTGGTATCCCATTTGGGGTTTTGACTGAGCTGGTTGGGCCTGCTGGGATTGGCAAAACACAGTTTTGCCTGAAGCTTGCATTGTTGGCTTCATTGCCGGCATCTTGTGGGGGTTTAGATGGTCATGTAATATATATCGATGCAGAATCCAAGTTTAGTTCAACAAGGCTGATAGAAATTGGGGTAAAGAGCTTCCCAGAAATATTTCACACAAGAGGACTGGCGCAAGAGATGGCTGGTAGGATCCTTGTTTTGCGGCCTACGTCACTTTCTGAATTCACTGAGAGTTTGCAACAAATCAAGATTTCACTCCTTCAAAACCAAGTGAAGTTGCTAATCATTGATAGCATGGCCGCCCTCGTTTCAGGGGATCATGTGCAAGGAGCTACTCGGCAACATTTATTGGGTTGGCATATCTCCTTTATTAAATCACTTGCTGAATTTTCACGAATCCCTGTTGTTGTTACAAACCAAGTGAGATCTCAAAGTCATGATGAAGTCTGCCAGTATTCCTTTCAAGGGCATAGCAGGCAAAAGACTATAGAGGATTATAAAGGACATGATTCTCATCTTGTTCCTGCTTTGGGGATTCATTGGGCTCATGCTGTCACCATACGCCTTGTGCTTGATGCTAAATCTGGGAAGAGGTTCATCAAGCTGGCAAAGTCTCCAGTATCACCTCCTCTAGCCTTCCCATTCAACATAACATCATCTGGAATTACACTGCTAACTGATGATGGAATAGAGCTCATGGGACCAGAGATAAACACAATTCATTGTCAAGGTCACAGTGACATAATTCATTTTGATGGGGAAAGATTGCAGTATAGAGCTGCATAA

Protein Analysis

369

Amino Acids

40.18

Weight (kDa)

6.76

Isoelectric Point (pI)

43.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHH_XRCC3_RpoA PF26169 6 - 59 1.4e-20 XRCC3/RpoA-like, helix-hairpin-helix domain
Rad51 PF08423 78 - 331 2.2e-29 Rad51
AAA_25 PF13481 85 - 215 2.8e-06 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 822
AciI CCGC 4 cut(s) 78, 270, 526, 624
AclWI GGATC 3 cut(s) 508, 521, 648
AcoI YGGCCR 1 cut(s) 621
AcsI RAATTY 3 cut(s) 104, 545, 710
AcuI CTGAAG 1 cut(s) 362
AfiI CCNNNNNNNGG 3 cut(s) 286, 789, 854
AflIII ACRYGT 1 cut(s) 179
AgsI TTSAA 4 cut(s) 432, 587, 788, 970
AjiI CACGTC 1 cut(s) 150
AjnI CCWGG 1 cut(s) 258
AleI CACNNNNGTG 1 cut(s) 222
Alw21I GWGCWC 2 cut(s) 219, 1020
Alw26I GTCTC 1 cut(s) 942
AlwI GGATC 3 cut(s) 508, 521, 648
AoxI GGCC 5 cut(s) 28, 261, 308, 527, 621
ApeKI GCWGC 3 cut(s) 59, 241, 1103
ApoI RAATTY 3 cut(s) 104, 545, 710
AseI ATTAAT 1 cut(s) 113
Asp700I GAANNNNTTC 2 cut(s) 474, 917
AspLEI GCGC 2 cut(s) 202, 496
AspS9I GGNCC 3 cut(s) 28, 308, 1025
AsuHPI GGTGA 4 cut(s) 64, 221, 871, 939
AsuII TTCGAA 1 cut(s) 108
AvaII GGWCC 1 cut(s) 1025
BamHI GGATCC 1 cut(s) 513
BanII GRGCYC 2 cut(s) 871, 1020
BbsI GAAGAC 1 cut(s) 46
Bbv12I GWGCWC 2 cut(s) 219, 1020
BbvI GCAGC 3 cut(s) 71, 253, 1090
BccI CCATC 5 cut(s) 19, 383, 496, 1001, 1073
BciT130I CCWGG 1 cut(s) 260
BciVI GTATCC 1 cut(s) 287
BcoDI GTCTC 1 cut(s) 942
BfaI CTAG 3 cut(s) 125, 254, 956
BfmI CTRYAG 1 cut(s) 810
BfuI GTATCC 1 cut(s) 287
BglII AGATCT 1 cut(s) 749
BisI GCNGC 5 cut(s) 60, 242, 527, 624, 1104
BlsI GCNGC 5 cut(s) 61, 243, 528, 625, 1105
Bme1390I CCNGG 1 cut(s) 260
Bme18I GGWCC 1 cut(s) 1025
BmgBI CACGTC 1 cut(s) 150
BmgT120I GGNCC 3 cut(s) 28, 308, 1025
BmiI GGNNCC 2 cut(s) 515, 1026
BmrFI CCNGG 1 cut(s) 260
BmsI GCATC 4 cut(s) 174, 380, 400, 889
BpiI GAAGAC 1 cut(s) 46
BpmI CTGGAG 1 cut(s) 924
Bpu14I TTCGAA 1 cut(s) 108
Bsa29I ATCGAT 1 cut(s) 408
BsaBI GATNNNNATC 1 cut(s) 837
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 3 cut(s) 286, 789, 854
Bse118I RCCGGY 1 cut(s) 367
Bse1I ACTGG 3 cut(s) 495, 775, 941
Bse3DI GCAATG 1 cut(s) 362
Bse8I GATNNNNATC 1 cut(s) 837
BseBI CCWGG 1 cut(s) 260
BseCI ATCGAT 1 cut(s) 408
BseDI CCNNGG 1 cut(s) 81
BseJI GATNNNNATC 1 cut(s) 837
BseLI CCNNNNNNNGG 3 cut(s) 286, 789, 854
BseMI GCAATG 1 cut(s) 362
BseMII CTCAG 2 cut(s) 288, 543
BseNI ACTGG 3 cut(s) 495, 775, 941
BseRI GAGGAG 1 cut(s) 942
BseXI GCAGC 3 cut(s) 71, 253, 1090
BseYI CCCAGC 1 cut(s) 314
BshFI GGCC 5 cut(s) 30, 263, 310, 529, 623
BshVI ATCGAT 1 cut(s) 408
BsiHKAI GWGCWC 2 cut(s) 219, 1020
BsiSI CCGG 1 cut(s) 368
BslFI GGGAC 1 cut(s) 1038
BslI CCNNNNNNNGG 3 cut(s) 286, 789, 854
BsmAI GTCTC 1 cut(s) 942
BsmFI GGGAC 1 cut(s) 1038
BsnI GGCC 5 cut(s) 30, 263, 310, 529, 623
Bsp119I TTCGAA 1 cut(s) 108
Bsp1286I GDGCHC 3 cut(s) 219, 871, 1020
Bsp143I GATC 3 cut(s) 513, 640, 749
BspACI CCGC 4 cut(s) 78, 270, 526, 624
BspANI GGCC 5 cut(s) 30, 263, 310, 529, 623
BspCNI CTCAG 2 cut(s) 289, 544
BspDI ATCGAT 1 cut(s) 408
BspHI TCATGA 1 cut(s) 760
BspLI GGNNCC 2 cut(s) 515, 1026
BspPI GGATC 3 cut(s) 508, 521, 648
BspT104I TTCGAA 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 362
BsrFI RCCGGY 1 cut(s) 367
BsrI ACTGG 3 cut(s) 495, 775, 941
BssAI RCCGGY 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 3 cut(s) 513, 640, 749
BssT1I CCWWGG 1 cut(s) 81
Bst2UI CCWGG 1 cut(s) 260
Bst4CI ACNGT 2 cut(s) 333, 1061
Bst6I CTCTTC 1 cut(s) 908
BstBI TTCGAA 1 cut(s) 108
BstC8I GCNNGC 6 cut(s) 163, 312, 348, 369, 800, 930
BstDEI CTNAG 2 cut(s) 297, 552
BstEII GGTNACC 1 cut(s) 227
BstHHI GCGC 2 cut(s) 202, 496
BstKTI GATC 3 cut(s) 516, 643, 752
BstMAI GTCTC 1 cut(s) 942
BstMBI GATC 3 cut(s) 513, 640, 749
BstMWI GCNNNNNNNGC 5 cut(s) 86, 250, 307, 356, 799
BstNI CCWGG 1 cut(s) 260
BstNSI RCATGY 1 cut(s) 183
BstPI GGTNACC 1 cut(s) 227
BstSCI CCNGG 1 cut(s) 258
BstSFI CTRYAG 1 cut(s) 810
BstV1I GCAGC 3 cut(s) 71, 253, 1090
BstV2I GAAGAC 1 cut(s) 46
BstX2I RGATCY 2 cut(s) 513, 749
BstYI RGATCY 2 cut(s) 513, 749
Bsu15I ATCGAT 1 cut(s) 408
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 5 cut(s) 30, 263, 310, 529, 623
BsuTUI ATCGAT 1 cut(s) 408
BtrI CACGTC 1 cut(s) 150
BtsI GCAGTG 1 cut(s) 992
BtsIMutI CAGTG 4 cut(s) 175, 549, 992, 1066
Cac8I GCNNGC 6 cut(s) 163, 312, 348, 369, 800, 930
CciI TCATGA 1 cut(s) 760
CfoI GCGC 2 cut(s) 202, 496
Cfr10I RCCGGY 1 cut(s) 367
Cfr13I GGNCC 3 cut(s) 28, 308, 1025
ClaI ATCGAT 1 cut(s) 408
CseI GACGC 1 cut(s) 247
CviAII CATG 9 cut(s) 180, 220, 395, 619, 644, 761, 830, 872, 1021
DdeI CTNAG 2 cut(s) 297, 552
DpnI GATC 3 cut(s) 515, 642, 751
DpnII GATC 3 cut(s) 513, 640, 749
EaeI YGGCCR 1 cut(s) 621
Eam1104I CTCTTC 1 cut(s) 908
EarI CTCTTC 1 cut(s) 908
Ecl136II GAGCTC 1 cut(s) 1018
Eco130I CCWWGG 1 cut(s) 81
Eco147I AGGCCT 1 cut(s) 263
Eco24I GRGCYC 2 cut(s) 871, 1020
Eco47I GGWCC 1 cut(s) 1025
Eco53kI GAGCTC 1 cut(s) 1018
Eco57I CTGAAG 1 cut(s) 362
Eco91I GGTNACC 1 cut(s) 227
EcoICRI GAGCTC 1 cut(s) 1018
EcoO65I GGTNACC 1 cut(s) 227
EcoRI GAATTC 2 cut(s) 104, 545
EcoRII CCWGG 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 81
EcoT38I GRGCYC 2 cut(s) 871, 1020
ErhI CCWWGG 1 cut(s) 81
FaeI CATG 9 cut(s) 183, 223, 398, 622, 647, 764, 833, 875, 1024
FaqI GGGAC 1 cut(s) 1038
FatI CATG 9 cut(s) 179, 219, 394, 618, 643, 760, 829, 871, 1020
Fnu4HI GCNGC 5 cut(s) 60, 242, 527, 624, 1104
FriOI GRGCYC 2 cut(s) 871, 1020
Fsp4HI GCNGC 5 cut(s) 60, 242, 527, 624, 1104
FspBI CTAG 3 cut(s) 125, 254, 956
GlaI GCGC 2 cut(s) 201, 495
GluI GCNGC 5 cut(s) 60, 242, 527, 624, 1104
GsaI CCCAGC 1 cut(s) 318
GsuI CTGGAG 1 cut(s) 924
HaeIII GGCC 5 cut(s) 30, 263, 310, 529, 623
HapII CCGG 1 cut(s) 368
HgaI GACGC 1 cut(s) 247
HhaI GCGC 2 cut(s) 202, 496
Hin1II CATG 9 cut(s) 183, 223, 398, 622, 647, 764, 833, 875, 1024
Hin6I GCGC 2 cut(s) 200, 494
HinP1I GCGC 2 cut(s) 200, 494
HindIII AAGCTT 2 cut(s) 87, 344
HinfI GANTC 4 cut(s) 416, 720, 833, 859
HpaII CCGG 1 cut(s) 368
HphI GGTGA 4 cut(s) 64, 221, 871, 939
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 1 cut(s) 544
Hpy188III TCNNGA 4 cut(s) 571, 717, 761, 984
Hpy8I GTNNAC 1 cut(s) 185
Hpy99I CGWCG 1 cut(s) 241
HpyAV CCTTC 3 cut(s) 41, 593, 970
HpyCH4III ACNGT 2 cut(s) 333, 1061
HpyCH4IV ACGT 3 cut(s) 51, 149, 533
HpyCH4V TGCA 6 cut(s) 350, 413, 562, 649, 1093, 1106
HpyF10VI GCNNNNNNNGC 5 cut(s) 86, 250, 307, 356, 799
HpyF3I CTNAG 2 cut(s) 297, 552
HpySE526I ACGT 3 cut(s) 51, 149, 533
Hsp92II CATG 9 cut(s) 183, 223, 398, 622, 647, 764, 833, 875, 1024
HspAI GCGC 2 cut(s) 200, 494
KroI GCCGGC 1 cut(s) 367
KroNI GCCGGC 1 cut(s) 369
Kzo9I GATC 3 cut(s) 513, 640, 749
LmnI GCTCC 2 cut(s) 214, 653
Lsp1109I GCAGC 3 cut(s) 71, 253, 1090
LweI GCATC 4 cut(s) 174, 380, 400, 889
MaeI CTAG 3 cut(s) 125, 254, 956
MaeII ACGT 3 cut(s) 51, 149, 533
MaeIII GTNAC 8 cut(s) 65, 145, 227, 534, 733, 877, 1055, 1061
MalI GATC 3 cut(s) 515, 642, 751
MboI GATC 3 cut(s) 513, 640, 749
MboII GAAGA 2 cut(s) 46, 925
MflI RGATCY 2 cut(s) 513, 749
MhlI GDGCHC 3 cut(s) 219, 871, 1020
MluCI AATT 8 cut(s) 104, 110, 447, 545, 710, 987, 1041, 1068
MnlI CCTC 6 cut(s) 479, 638, 808, 909, 960, 963
MroNI GCCGGC 1 cut(s) 367
MroXI GAANNNNTTC 2 cut(s) 474, 917
MseI TTAA 2 cut(s) 113, 696
MslI CAYNNNNRTG 2 cut(s) 222, 1077
MspI CCGG 1 cut(s) 368
MspR9I CCNGG 1 cut(s) 260
MvaI CCWGG 1 cut(s) 260
MwoI GCNNNNNNNGC 5 cut(s) 86, 250, 307, 356, 799
NaeI GCCGGC 1 cut(s) 369
NdeII GATC 3 cut(s) 513, 640, 749
NgoMIV GCCGGC 1 cut(s) 367
NlaIII CATG 9 cut(s) 183, 223, 398, 622, 647, 764, 833, 875, 1024
NlaIV GGNNCC 2 cut(s) 515, 1026
NmeAIII GCCGAG 1 cut(s) 640
NmuCI GTSAC 6 cut(s) 145, 227, 534, 877, 1055, 1061
NspI RCATGY 1 cut(s) 183
NspV TTCGAA 1 cut(s) 108
OliI CACNNNNGTG 1 cut(s) 222
PagI TCATGA 1 cut(s) 760
PceI AGGCCT 1 cut(s) 263
PciI ACATGT 1 cut(s) 179
PdiI GCCGGC 1 cut(s) 369
PdmI GAANNNNTTC 2 cut(s) 474, 917
PfeI GAWTC 4 cut(s) 416, 720, 833, 859
PkrI GCNGC 5 cut(s) 61, 243, 528, 625, 1105
PscI ACATGT 1 cut(s) 179
PshBI ATTAAT 1 cut(s) 113
PsiI TTATAA 1 cut(s) 822
Psp124BI GAGCTC 1 cut(s) 1020
Psp6I CCWGG 1 cut(s) 258
PspEI GGTNACC 1 cut(s) 227
PspFI CCCAGC 1 cut(s) 314
PspGI CCWGG 1 cut(s) 258
PspN4I GGNNCC 2 cut(s) 515, 1026
PspPI GGNCC 3 cut(s) 28, 308, 1025
PsuI RGATCY 2 cut(s) 513, 749
RseI CAYNNNNRTG 2 cut(s) 222, 1077
SacI GAGCTC 1 cut(s) 1020
SaqAI TTAA 2 cut(s) 113, 696
SatI GCNGC 5 cut(s) 60, 242, 527, 624, 1104
Sau3AI GATC 3 cut(s) 513, 640, 749
Sau96I GGNCC 3 cut(s) 28, 308, 1025
ScrFI CCNGG 1 cut(s) 260
SduI GDGCHC 3 cut(s) 219, 871, 1020
SfaNI GCATC 4 cut(s) 174, 380, 400, 889
SfcI CTRYAG 1 cut(s) 810
SfuI TTCGAA 1 cut(s) 108
SinI GGWCC 1 cut(s) 1025
SmiMI CAYNNNNRTG 2 cut(s) 222, 1077
Sse9I AATT 8 cut(s) 104, 110, 447, 545, 710, 987, 1041, 1068
SseBI AGGCCT 1 cut(s) 263
SsiI CCGC 4 cut(s) 78, 270, 526, 624
SspI AATATT 1 cut(s) 474
SspMI CTAG 3 cut(s) 125, 254, 956
SstI GAGCTC 1 cut(s) 1020
StuI AGGCCT 1 cut(s) 263
StyD4I CCNGG 1 cut(s) 258
StyI CCWWGG 1 cut(s) 81
TaaI ACNGT 2 cut(s) 333, 1061
TaiI ACGT 3 cut(s) 54, 152, 536
TaqI TCGA 3 cut(s) 108, 236, 408
TaqII GACCGA 1 cut(s) 116
TasI AATT 8 cut(s) 104, 110, 447, 545, 710, 987, 1041, 1068
TauI GCSGC 2 cut(s) 529, 626
TfiI GAWTC 4 cut(s) 416, 720, 833, 859
Tru1I TTAA 2 cut(s) 113, 696
Tru9I TTAA 2 cut(s) 113, 696
TscAI CASTG 4 cut(s) 175, 556, 999, 1066
TseFI GTSAC 6 cut(s) 145, 227, 534, 877, 1055, 1061
TseI GCWGC 3 cut(s) 59, 241, 1103
Tsp45I GTSAC 6 cut(s) 145, 227, 534, 877, 1055, 1061
TspDTI ATGAA 6 cut(s) 351, 780, 851, 910, 1034, 1061
TspRI CASTG 4 cut(s) 175, 556, 999, 1066
VpaK11BI GGWCC 1 cut(s) 1025
VspI ATTAAT 1 cut(s) 113
XapI RAATTY 3 cut(s) 104, 545, 710
XceI RCATGY 1 cut(s) 183
XmnI GAANNNNTTC 2 cut(s) 474, 917
XspI CTAG 3 cut(s) 125, 254, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.