Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003541

Physical Location & Seq

Genomic Coordinates Reverse (-)

41723793 .. 41726779

Gene Structure 2987 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0341500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

ATGATTGGATCTGCATGTCAGATCTGGAATTCAAAATTGACCGGAGAGACCCTCATTGAGATTGCAGGATCGCCTCGGGGAGAGGAGAAGAAAGAGTGGAAGATGGCTACAACAGACGAGGTCGCAGGATCGGCTCCAAAGATAGTGTGGAATGAAGCGAAGCAGAGGTTCGAGTCAGAGGACCAGAAAGCCTACATAGACTACGTTCTCAGAGAAAAGGGGAAAGTGATGGACTTGGTTCACACCTATGTCCCATCTTCCAAGAGAGGCTTGGGCTTGGCCTCCCATCTCTGCGTTGCCGCCTTCAACCACGCCAAAGCCAACTCCATGTCCGTCATCCCCACCTGTTCTTACGTCTCTGAAGGGTATAGAAGAAGAATCGAAGCTGGCAAGAAAATCAGCAACATACCTATTGACATGATCTATACATCTGGACTGATGCATGCACAGATGACTGCCATGCCTGCCAGGACATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000150 GO:0000217 GO:0000280 GO:0000400 GO:0000707 GO:0000724 GO:0000725 GO:0000730 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006312 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008150 GO:0008152 GO:0009314 GO:0009628 GO:0009987 GO:0010212 GO:0016043 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022402 GO:0022414 GO:0022607 GO:0032991 GO:0033061 GO:0033063 GO:0033554 GO:0034622 GO:0034641 GO:0035825 GO:0042148 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0045003 GO:0046483 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061982 GO:0065003 GO:0065004 GO:0071704 GO:0071824 GO:0071840 GO:0090304 GO:0090735 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko03440 map03440

Pfam Domains

Protein Families

Rad51

Protein Analysis

158

Amino Acids

17.51

Weight (kDa)

8.96

Isoelectric Point (pI)

51.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_CG	PF14542	59 - 125	2.8e-18	GCN5-related N-acetyl-transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003541)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28560 AT2G28560 AT2G28560 AT2G28560 AT2G28560 AT2G28560
fragaria_vesca	FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990 FvH4_3g33990
malus_domestica	MD11G1120900.v1.1
prunus_persica	Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1 Prupe.6G090900_v2.0.a1
pyrus_communis	pycom11g10220
rosa_chinensis	RchiOBHm_Chr5g0061521
rosa_laevigata	RLG00000035484
rosa_multiflora	Rmu_co8481717.1_g000001 Rmu_sc0006720.1_g000001 Rmu_sc0010824.1_g000011
rosa_roxburghii	Rroxscaffold_1G00019150
rosa_rugosa	Rorug05G0341400 Rorug05G0341500 Rorug05G0341600 Rorug05G0341700
rosa_samantha	Rh5AG403500 Rh5BG415700 Rh5CG440400 Rh5DG430200
rosa_wichuraiana	Rw5G037930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	300
AclWI	GGATC	3 cut(s)	16, 76, 136
AcsI	RAATTY	1 cut(s)	28
AcuI	CTGAAG	1 cut(s)	381
AgsI	TTSAA	2 cut(s)	33, 307
AjnI	CCWGG	1 cut(s)	467
AluBI	AGCT	1 cut(s)	386
AluI	AGCT	1 cut(s)	386
Alw26I	GTCTC	2 cut(s)	41, 361
AlwI	GGATC	3 cut(s)	16, 76, 136
Ama87I	CYCGRG	1 cut(s)	75
AoxI	GGCC	1 cut(s)	279
ApoI	RAATTY	1 cut(s)	28
AspS9I	GGNCC	1 cut(s)	181
AvaI	CYCGRG	1 cut(s)	75
AvaII	GGWCC	1 cut(s)	181
BccI	CCATC	4 cut(s)	97, 223, 262, 294
BciT130I	CCWGG	1 cut(s)	469
BcoDI	GTCTC	2 cut(s)	41, 361
BglII	AGATCT	1 cut(s)	21
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme1390I	CCNGG	1 cut(s)	469
Bme18I	GGWCC	1 cut(s)	181
BmeT110I	CYCGRG	1 cut(s)	75
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	1 cut(s)	135
BmrFI	CCNGG	1 cut(s)	469
BmsI	GCATC	1 cut(s)	429
BplI	GAGNNNNNCTC	2 cut(s)	36, 68
BsaI	GGTCTC	1 cut(s)	41
BsaJI	CCNNGG	1 cut(s)	74
BsaWI	WCCGGW	1 cut(s)	41
BseBI	CCWGG	1 cut(s)	469
BseDI	CCNNGG	1 cut(s)	74
BseGI	GGATG	1 cut(s)	336
BseMII	CTCAG	1 cut(s)	223
BseRI	GAGGAG	1 cut(s)	98
BshFI	GGCC	1 cut(s)	281
BsiHKCI	CYCGRG	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	41, 361
BsmBI	CGTCTC	1 cut(s)	361
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	281
Bso31I	GGTCTC	1 cut(s)	41
BsoBI	CYCGRG	1 cut(s)	75
Bsp143I	GATC	5 cut(s)	8, 21, 68, 128, 420
BspACI	CCGC	1 cut(s)	300
BspANI	GGCC	1 cut(s)	281
BspCNI	CTCAG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	135
BspPI	GGATC	3 cut(s)	16, 76, 136
BspTNI	GGTCTC	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	74
BssMI	GATC	5 cut(s)	8, 21, 68, 128, 420
Bst2UI	CCWGG	1 cut(s)	469
BstC8I	GCNNGC	3 cut(s)	388, 444, 465
BstDEI	CTNAG	1 cut(s)	209
BstF5I	GGATG	1 cut(s)	336
BstKTI	GATC	5 cut(s)	11, 24, 71, 131, 423
BstMAI	GTCTC	2 cut(s)	41, 361
BstMBI	GATC	5 cut(s)	8, 21, 68, 128, 420
BstMWI	GCNNNNNNNGC	2 cut(s)	131, 464
BstNI	CCWGG	1 cut(s)	469
BstNSI	RCATGY	2 cut(s)	18, 446
BstSCI	CCNGG	1 cut(s)	467
BstX2I	RGATCY	2 cut(s)	8, 21
BstYI	RGATCY	2 cut(s)	8, 21
BsuRI	GGCC	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	336
Cac8I	GCNNGC	3 cut(s)	388, 444, 465
Cfr13I	GGNCC	1 cut(s)	181
CviAII	CATG	5 cut(s)	15, 328, 418, 443, 460
CviJI	RGCY	8 cut(s)	107, 134, 191, 270, 276, 281, 320, 386
CviKI_1	RGCY	8 cut(s)	107, 134, 191, 270, 276, 281, 320, 386
DdeI	CTNAG	1 cut(s)	209
DpnI	GATC	5 cut(s)	10, 23, 70, 130, 422
DpnII	GATC	5 cut(s)	8, 21, 68, 128, 420
Eco31I	GGTCTC	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	381
Eco88I	CYCGRG	1 cut(s)	75
EcoRI	GAATTC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	467
EcoT22I	ATGCAT	1 cut(s)	444
Esp3I	CGTCTC	1 cut(s)	361
FaeI	CATG	5 cut(s)	18, 331, 421, 446, 463
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	5 cut(s)	14, 327, 417, 442, 459
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	323
Fsp4HI	GCNGC	1 cut(s)	300
GluI	GCNGC	1 cut(s)	300
HaeIII	GGCC	1 cut(s)	281
HapII	CCGG	1 cut(s)	42
Hin1II	CATG	5 cut(s)	18, 331, 421, 446, 463
HinfI	GANTC	2 cut(s)	173, 378
HpaII	CCGG	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	4 cut(s)	21, 178, 212, 361
Hpy188III	TCNNGA	2 cut(s)	25, 432
Hpy8I	GTNNAC	1 cut(s)	241
HpyAV	CCTTC	2 cut(s)	313, 356
HpyCH4IV	ACGT	2 cut(s)	204, 354
HpyCH4V	TGCA	4 cut(s)	14, 65, 442, 446
HpyF10VI	GCNNNNNNNGC	2 cut(s)	131, 464
HpyF3I	CTNAG	1 cut(s)	209
HpySE526I	ACGT	2 cut(s)	204, 354
Hsp92II	CATG	5 cut(s)	18, 331, 421, 446, 463
Kzo9I	GATC	5 cut(s)	8, 21, 68, 128, 420
LmnI	GCTCC	1 cut(s)	139
LpnPI	CCDG	9 cut(s)	10, 51, 55, 111, 197, 358, 372, 417, 454
LweI	GCATC	1 cut(s)	429
MaeII	ACGT	2 cut(s)	204, 354
MalI	GATC	5 cut(s)	10, 23, 70, 130, 422
MboI	GATC	5 cut(s)	8, 21, 68, 128, 420
MboII	GAAGA	5 cut(s)	100, 112, 249, 384, 387
MflI	RGATCY	2 cut(s)	8, 21
MluCI	AATT	2 cut(s)	28, 35
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	8 cut(s)	62, 76, 84, 112, 159, 172, 260, 292
Mph1103I	ATGCAT	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	42
MspR9I	CCNGG	1 cut(s)	469
MvaI	CCWGG	1 cut(s)	469
MwoI	GCNNNNNNNGC	2 cut(s)	131, 464
NdeII	GATC	5 cut(s)	8, 21, 68, 128, 420
NlaIII	CATG	5 cut(s)	18, 331, 421, 446, 463
NlaIV	GGNNCC	1 cut(s)	135
NsiI	ATGCAT	1 cut(s)	444
NspI	RCATGY	2 cut(s)	18, 446
PaeI	GCATGC	1 cut(s)	446
PfeI	GAWTC	1 cut(s)	378
PflFI	GACNNNGTC	1 cut(s)	119
PkrI	GCNGC	1 cut(s)	301
PleI	GAGTC	1 cut(s)	181
PpsI	GAGTC	1 cut(s)	181
Psp6I	CCWGG	1 cut(s)	467
PspGI	CCWGG	1 cut(s)	467
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	181
PsuI	RGATCY	2 cut(s)	8, 21
PsyI	GACNNNGTC	1 cut(s)	119
RseI	CAYNNNNRTG	1 cut(s)	246
SatI	GCNGC	1 cut(s)	300
Sau3AI	GATC	5 cut(s)	8, 21, 68, 128, 420
Sau96I	GGNCC	1 cut(s)	181
SchI	GAGTC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	469
SetI	ASST	8 cut(s)	123, 170, 207, 248, 347, 357, 388, 412
SfaNI	GCATC	1 cut(s)	429
SinI	GGWCC	1 cut(s)	181
SmiMI	CAYNNNNRTG	1 cut(s)	246
SphI	GCATGC	1 cut(s)	446
Sse9I	AATT	2 cut(s)	28, 35
SsiI	CCGC	1 cut(s)	300
StyD4I	CCNGG	1 cut(s)	467
TaiI	ACGT	2 cut(s)	207, 357
TaqI	TCGA	2 cut(s)	171, 381
TasI	AATT	2 cut(s)	28, 35
TauI	GCSGC	1 cut(s)	302
TfiI	GAWTC	1 cut(s)	378
TspDTI	ATGAA	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	322
Tth111I	GACNNNGTC	1 cut(s)	119
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	1 cut(s)	28
XceI	RCATGY	2 cut(s)	18, 446
XcmI	CCANNNNNNNNNTGG	2 cut(s)	144, 268
Zsp2I	ATGCAT	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.