Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0013121

Physical Location & Seq

Genomic Coordinates Forward (+)

12262013 .. 12263595

Gene Structure 1583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G28610.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGAGTCCTGTGGCTTCAACGAGGTGGTGTCCGACGCCGGAGCAACTGATGATCTTGGAAGAGATGTACCGGAGTGGTATACGGACTCCGAATGCGGTGCAGATACAACAGATCACAGCTCACTTGGCGTTCTATGGAAGAATCGAGGGCAAAAACGTCTTTTACTGGTTCCAGAACCATAAGGCTAGAGATAGACAGAAGCTGAGGAAGAAACTAGCCAAGCAACTTCACCAGCAACAACATCAACTTCAACTCCAACTTCAGCAGATCAAACCAAAACCAATATCATCGATGATTTCTCAACCAGTTAATAAGAATATCATCGATCATCACAATCCTTATCATCATCACCATCATAATCATCATCATAATCATCATCGTCCATATGATCATATGTCCTTTGATTGCTGCTCTCATCCTTCTCCCATGTGTCTTCCTCATCAGGGAACTGGAGTAGGAGAAGCTCCAAGCAAAGTGATGAATGAATATTACTGCACCAAAAGTGGAGCTGAAGAGATATTGATGCAAAAATCAATCACGGGTCCAAACTCATCGTACGGTCGAGATTGGATGATGATGATGGATATGGGCCCACGACCATCATATCCCTCATCATCATCATCACCCATTTCATGTTGTAACATGATGATGAGCAGTCCAAAGATACCATTGAAAACCCTGGAACTTTTCCCAATCTCATCTATCAACTCCAAACAAGACAGTACCAAACTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

244

Amino Acids

28.13

Weight (kDa)

9.31

Isoelectric Point (pI)

72.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	7 - 66	2.3e-13	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28610
fragaria_vesca	FvH4_3g34410
malus_domestica	MD03G1106400.v1.1 MD11G1118500.v1.1
prunus_persica	Prupe.6G088900_v2.0.a1 Prupe.6G088900_v2.0.a1
pyrus_communis	pycom03g08570 pycom11g09980
rosa_chinensis	RchiOBHm_Chr5g0062001
rosa_laevigata	RLG00000035525
rosa_multiflora	Rmu_sc0002296.1_g000004
rosa_roxburghii	Rroxscaffold_1G00018700
rosa_rugosa	Rorug05G0345400
rosa_samantha	Rh5AG406700 Rh5BG420100 Rh5CG444200 Rh5DG435500
rosa_wichuraiana	Rw5G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	79
AciI	CCGC	1 cut(s)	95
AcuI	CTGAAG	2 cut(s)	245, 531
AcyI	GRCGYC	1 cut(s)	35
AfaI	GTAC	3 cut(s)	68, 557, 724
AfiI	CCNNNNNNNGG	1 cut(s)	443
AgsI	TTSAA	3 cut(s)	18, 251, 673
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	4 cut(s)	119, 202, 464, 509
AluI	AGCT	4 cut(s)	119, 202, 464, 509
AlwNI	CAGNNNCTG	1 cut(s)	202
AoxI	GGCC	1 cut(s)	589
ApaI	GGGCCC	1 cut(s)	593
ApeKI	GCWGC	1 cut(s)	408
AspS9I	GGNCC	3 cut(s)	542, 589, 590
AsuHPI	GGTGA	3 cut(s)	221, 341, 615
AvaII	GGWCC	1 cut(s)	542
BaeGI	GKGCMC	1 cut(s)	593
BanII	GRGCYC	1 cut(s)	593
BbsI	GAAGAC	1 cut(s)	425
BbvCI	CCTCAGC	1 cut(s)	203
BbvI	GCAGC	1 cut(s)	395
BccI	CCATC	3 cut(s)	360, 574, 607
BcgI	CGANNNNNNTGC	2 cut(s)	79, 113
BciT130I	CCWGG	1 cut(s)	680
BclI	TGATCA	1 cut(s)	388
BfaI	CTAG	2 cut(s)	186, 215
BisI	GCNGC	1 cut(s)	409
BlsI	GCNGC	1 cut(s)	410
Bme1390I	CCNGG	1 cut(s)	680
Bme18I	GGWCC	1 cut(s)	542
BmgT120I	GGNCC	3 cut(s)	542, 589, 590
BmiI	GGNNCC	3 cut(s)	170, 543, 591
BmrFI	CCNGG	1 cut(s)	680
BmsI	GCATC	1 cut(s)	513
BpiI	GAAGAC	1 cut(s)	425
BpmI	CTGGAG	1 cut(s)	471
Bpu10I	CCTNAGC	1 cut(s)	203
Bsa29I	ATCGAT	2 cut(s)	290, 324
BsaHI	GRCGYC	1 cut(s)	35
BsaJI	CCNNGG	1 cut(s)	678
BsaWI	WCCGGW	1 cut(s)	69
BsaXI	ACNNNNNCTCC	2 cut(s)	237, 267
Bsc4I	CCNNNNNNNGG	1 cut(s)	443
Bse1I	ACTGG	3 cut(s)	170, 305, 454
BseBI	CCWGG	1 cut(s)	680
BseCI	ATCGAT	2 cut(s)	290, 324
BseDI	CCNNGG	1 cut(s)	678
BseGI	GGATG	2 cut(s)	415, 576
BseLI	CCNNNNNNNGG	1 cut(s)	443
BseMII	CTCAG	1 cut(s)	194
BseNI	ACTGG	3 cut(s)	170, 305, 454
BseSI	GKGCMC	1 cut(s)	593
BseXI	GCAGC	1 cut(s)	395
BsgI	GTGCAG	2 cut(s)	119, 478
Bsh1285I	CGRYCG	1 cut(s)	562
BshFI	GGCC	1 cut(s)	591
BshVI	ATCGAT	2 cut(s)	290, 324
BsiEI	CGRYCG	1 cut(s)	562
BsiSI	CCGG	2 cut(s)	38, 70
BsiWI	CGTACG	1 cut(s)	555
BslI	CCNNNNNNNGG	1 cut(s)	443
BsmI	GAATGC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	591
Bsp120I	GGGCCC	1 cut(s)	589
Bsp1286I	GDGCHC	1 cut(s)	593
Bsp143I	GATC	5 cut(s)	51, 111, 267, 325, 388
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	1 cut(s)	591
BspCNI	CTCAG	1 cut(s)	195
BspDI	ATCGAT	2 cut(s)	290, 324
BspLI	GGNNCC	3 cut(s)	170, 543, 591
BsrI	ACTGG	3 cut(s)	170, 305, 454
BssECI	CCNNGG	1 cut(s)	678
BssMI	GATC	5 cut(s)	51, 111, 267, 325, 388
BssNAI	GTATAC	1 cut(s)	80
BssNI	GRCGYC	1 cut(s)	35
Bst1107I	GTATAC	1 cut(s)	80
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	2 cut(s)	560, 722
Bst6I	CTCTTC	2 cut(s)	54, 507
BstACI	GRCGYC	1 cut(s)	35
BstDEI	CTNAG	1 cut(s)	203
BstF5I	GGATG	2 cut(s)	415, 576
BstKTI	GATC	5 cut(s)	54, 114, 270, 328, 391
BstMBI	GATC	5 cut(s)	51, 111, 267, 325, 388
BstMCI	CGRYCG	1 cut(s)	562
BstMWI	GCNNNNNNNGC	1 cut(s)	125
BstNI	CCWGG	1 cut(s)	680
BstSCI	CCNGG	1 cut(s)	678
BstSLI	GKGCMC	1 cut(s)	593
BstV1I	GCAGC	1 cut(s)	395
BstV2I	GAAGAC	1 cut(s)	425
BstZ17I	GTATAC	1 cut(s)	80
Bsu15I	ATCGAT	2 cut(s)	290, 324
BsuRI	GGCC	1 cut(s)	591
BsuTUI	ATCGAT	2 cut(s)	290, 324
BtsCI	GGATG	2 cut(s)	415, 576
CaiI	CAGNNNCTG	1 cut(s)	202
Cfr13I	GGNCC	3 cut(s)	542, 589, 590
ClaI	ATCGAT	2 cut(s)	290, 324
CseI	GACGC	1 cut(s)	43
Csp6I	GTAC	3 cut(s)	67, 556, 723
CviAII	CATG	3 cut(s)	427, 633, 643
CviJI	RGCY	8 cut(s)	14, 119, 185, 202, 218, 464, 509, 591
CviKI_1	RGCY	8 cut(s)	14, 119, 185, 202, 218, 464, 509, 591
CviQI	GTAC	3 cut(s)	67, 556, 723
DdeI	CTNAG	1 cut(s)	203
DpnI	GATC	5 cut(s)	53, 113, 269, 327, 390
DpnII	GATC	5 cut(s)	51, 111, 267, 325, 388
Eam1104I	CTCTTC	2 cut(s)	54, 507
EarI	CTCTTC	2 cut(s)	54, 507
Eco24I	GRGCYC	1 cut(s)	593
Eco47I	GGWCC	1 cut(s)	542
Eco57I	CTGAAG	2 cut(s)	245, 531
EcoRII	CCWGG	1 cut(s)	678
EcoT38I	GRGCYC	1 cut(s)	593
FaeI	CATG	3 cut(s)	430, 636, 646
FatI	CATG	3 cut(s)	426, 632, 642
FauNDI	CATATG	2 cut(s)	385, 393
FbaI	TGATCA	1 cut(s)	388
FblI	GTMKAC	1 cut(s)	79
Fnu4HI	GCNGC	1 cut(s)	409
FokI	GGATG	2 cut(s)	402, 583
FriOI	GRGCYC	1 cut(s)	593
Fsp4HI	GCNGC	1 cut(s)	409
FspBI	CTAG	2 cut(s)	186, 215
GluI	GCNGC	1 cut(s)	409
GsuI	CTGGAG	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	591
HapII	CCGG	2 cut(s)	38, 70
HgaI	GACGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	35
Hin1II	CATG	3 cut(s)	430, 636, 646
HinfI	GANTC	3 cut(s)	4, 85, 141
HpaII	CCGG	2 cut(s)	38, 70
HphI	GGTGA	3 cut(s)	221, 341, 615
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	2 cut(s)	33, 90
Hpy188III	TCNNGA	2 cut(s)	172, 563
Hpy8I	GTNNAC	1 cut(s)	80
Hpy99I	CGWCG	1 cut(s)	37
HpyAV	CCTTC	1 cut(s)	429
HpyCH4III	ACNGT	2 cut(s)	560, 722
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	3 cut(s)	100, 495, 526
HpyF10VI	GCNNNNNNNGC	1 cut(s)	125
HpyF3I	CTNAG	1 cut(s)	203
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	35
Hsp92II	CATG	3 cut(s)	430, 636, 646
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	5 cut(s)	51, 111, 267, 325, 388
LmnI	GCTCC	3 cut(s)	40, 469, 506
Lsp1109I	GCAGC	1 cut(s)	395
LweI	GCATC	1 cut(s)	513
MaeI	CTAG	2 cut(s)	186, 215
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	638
MalI	GATC	5 cut(s)	53, 113, 269, 327, 390
MboI	GATC	5 cut(s)	51, 111, 267, 325, 388
MboII	GAAGA	5 cut(s)	71, 150, 220, 425, 524
MhlI	GDGCHC	1 cut(s)	593
MlyI	GAGTC	2 cut(s)	13, 79
MmeI	TCCRAC	2 cut(s)	56, 280
MnlI	CCTC	5 cut(s)	15, 139, 198, 447, 619
MseI	TTAA	2 cut(s)	309, 733
MslI	CAYNNNNRTG	1 cut(s)	647
MspI	CCGG	2 cut(s)	38, 70
MspR9I	CCNGG	1 cut(s)	680
Mva1269I	GAATGC	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	1 cut(s)	125
NdeI	CATATG	2 cut(s)	385, 393
NdeII	GATC	5 cut(s)	51, 111, 267, 325, 388
NlaIII	CATG	3 cut(s)	430, 636, 646
NlaIV	GGNNCC	3 cut(s)	170, 543, 591
PctI	GAATGC	1 cut(s)	97
PfeI	GAWTC	1 cut(s)	141
Pfl23II	CGTACG	1 cut(s)	555
PkrI	GCNGC	1 cut(s)	410
PleI	GAGTC	2 cut(s)	12, 79
PpsI	GAGTC	2 cut(s)	12, 79
Psp6I	CCWGG	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	678
PspLI	CGTACG	1 cut(s)	555
PspN4I	GGNNCC	3 cut(s)	170, 543, 591
PspOMI	GGGCCC	1 cut(s)	589
PspPI	GGNCC	3 cut(s)	542, 589, 590
PstNI	CAGNNNCTG	1 cut(s)	202
RsaI	GTAC	3 cut(s)	68, 557, 724
RsaNI	GTAC	3 cut(s)	67, 556, 723
RseI	CAYNNNNRTG	1 cut(s)	647
SaqAI	TTAA	2 cut(s)	309, 733
SatI	GCNGC	1 cut(s)	409
Sau3AI	GATC	5 cut(s)	51, 111, 267, 325, 388
Sau96I	GGNCC	3 cut(s)	542, 589, 590
SchI	GAGTC	2 cut(s)	13, 79
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	1 cut(s)	593
SetI	ASST	6 cut(s)	26, 121, 159, 204, 466, 511
SfaNI	GCATC	1 cut(s)	513
SinI	GGWCC	1 cut(s)	542
SmiMI	CAYNNNNRTG	1 cut(s)	647
SsiI	CCGC	1 cut(s)	95
SspI	AATATT	1 cut(s)	488
SspMI	CTAG	2 cut(s)	186, 215
StyD4I	CCNGG	1 cut(s)	678
TaaI	ACNGT	2 cut(s)	560, 722
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	4 cut(s)	144, 290, 324, 562
TfiI	GAWTC	1 cut(s)	141
Tru1I	TTAA	2 cut(s)	309, 733
Tru9I	TTAA	2 cut(s)	309, 733
TseI	GCWGC	1 cut(s)	408
TspDTI	ATGAA	3 cut(s)	494, 498, 621
TspGWI	ACGGA	1 cut(s)	97
VpaK11BI	GGWCC	1 cut(s)	542
XmiI	GTMKAC	1 cut(s)	79
XspI	CTAG	2 cut(s)	186, 215

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.