Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0013121

Physical Location & Seq

Genomic Coordinates Forward (+)

61698442 .. 61708589

Gene Structure 10148 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG444200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGATAGGAGAGTGGGTGAATGCTGAAGCAAAGCTCTATACTCAAGTCTTGATGAGAGACTTTGAACATAATGGATTGAATCTTACTTTAATCAAGAGAGAGGAGATGCAGCGTGTGAGAGTCCAAATTGATGAGCTAAGCTTGCGCTATATCCAAAATCTACATGAGGATTTTTCTTTCCTTGTCTTCACTGAGACTGAGTTGGCTGGGGTACCACAAGAGTTTCTCAAGAAAAGATTGGAAAATATAAGGCAACATGGAATACCATTAGTCATAGGCAAGCTCGAAGGGTTAAACTCTCTTCATTTCATTGCCAGCCATTTCCGCTTTTGGGACCAAGAGAGTAGAACAGCAGAACTTGTGGTTGCAGTTATGGAGACAAACAAGATGCAGGTGGGAGTTGAAGATGCAATGATGAACTACACGCGCAAGGTCCATGAAATCCCAGCAGCAGCAGAGAGATTGGAGATGGAGAAGTCGGTGCTGAACATGTATGGCCATGATTGGATGATGACGACGAAGAAGACGATGGATGTGGGCCCACCCGCATCACCTGCATGTTGTACCAGATCAGCTGCTGCTACTCCTAGACCCCTTAAAACACTCCAACTCTTCCCCATCAAGTCCCCTAATCTCAGAGCTGAAGATCATGAAGAAGAAGAATCTACATCTACACCATCCAACCCGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

230

Amino Acids

26.38

Weight (kDa)

5.66

Isoelectric Point (pI)

42.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28610
fragaria_vesca	FvH4_3g34410
malus_domestica	MD03G1106400.v1.1 MD11G1118500.v1.1
prunus_persica	Prupe.6G088900_v2.0.a1 Prupe.6G088900_v2.0.a1
pyrus_communis	pycom03g08570 pycom11g09980
rosa_chinensis	RchiOBHm_Chr5g0062001
rosa_laevigata	RLG00000035525
rosa_multiflora	Rmu_sc0002296.1_g000004
rosa_roxburghii	Rroxscaffold_1G00018700
rosa_rugosa	Rorug05G0345400
rosa_samantha	Rh5AG406700 Rh5BG420100 Rh5CG444200 Rh5DG435500
rosa_wichuraiana	Rw5G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	382, 562
Acc36I	ACCTGC	2 cut(s)	382, 562
Acc65I	GGTACC	1 cut(s)	211
AccB1I	GGYRCC	1 cut(s)	211
AccII	CGCG	1 cut(s)	427
AciI	CCGC	2 cut(s)	325, 546
AcoI	YGGCCR	1 cut(s)	496
AcuI	CTGAAG	2 cut(s)	45, 663
AfaI	GTAC	2 cut(s)	213, 565
AfiI	CCNNNNNNNGG	1 cut(s)	331
AflIII	ACRYGT	1 cut(s)	489
AgsI	TTSAA	3 cut(s)	65, 79, 404
AluBI	AGCT	6 cut(s)	34, 136, 141, 283, 575, 641
AluI	AGCT	6 cut(s)	34, 136, 141, 283, 575, 641
Alw26I	GTCTC	3 cut(s)	51, 188, 371
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	3 cut(s)	496, 538, 687
ApaI	GGGCCC	1 cut(s)	542
ApeKI	GCWGC	5 cut(s)	109, 449, 452, 575, 578
Asp718I	GGTACC	1 cut(s)	211
AspLEI	GCGC	2 cut(s)	147, 429
AspS9I	GGNCC	4 cut(s)	334, 433, 538, 539
AsuC2I	CCSGG	1 cut(s)	686
AsuHPI	GGTGA	2 cut(s)	28, 543
AvaII	GGWCC	2 cut(s)	334, 433
BaeGI	GKGCMC	1 cut(s)	542
BalI	TGGCCA	1 cut(s)	498
BanI	GGYRCC	1 cut(s)	211
BanII	GRGCYC	1 cut(s)	542
BbsI	GAAGAC	2 cut(s)	178, 530
BbvI	GCAGC	5 cut(s)	121, 461, 464, 562, 565
BccI	CCATC	4 cut(s)	463, 523, 626, 685
BcnI	CCSGG	1 cut(s)	686
BcoDI	GTCTC	3 cut(s)	51, 188, 371
BfaI	CTAG	2 cut(s)	588, 691
BfuAI	ACCTGC	2 cut(s)	382, 562
BisI	GCNGC	5 cut(s)	110, 450, 453, 576, 579
BlpI	GCTNAGC	1 cut(s)	137
BlsI	GCNGC	5 cut(s)	111, 451, 454, 577, 580
Bme1390I	CCNGG	1 cut(s)	686
Bme18I	GGWCC	2 cut(s)	334, 433
BmgT120I	GGNCC	4 cut(s)	334, 433, 538, 539
BmiI	GGNNCC	3 cut(s)	213, 335, 540
BmrFI	CCNGG	1 cut(s)	686
BmsI	GCATC	4 cut(s)	96, 378, 397, 557
BpiI	GAAGAC	2 cut(s)	178, 530
Bpu1102I	GCTNAGC	1 cut(s)	137
BpuEI	CTTGAG	2 cut(s)	27, 212
BpuMI	CCSGG	1 cut(s)	686
BsaXI	ACNNNNNCTCC	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	1 cut(s)	331
Bse3DI	GCAATG	2 cut(s)	309, 417
BseGI	GGATG	3 cut(s)	513, 538, 677
BseLI	CCNNNNNNNGG	1 cut(s)	331
BseMI	GCAATG	2 cut(s)	309, 417
BseMII	CTCAG	3 cut(s)	183, 189, 649
BseRI	GAGGAG	1 cut(s)	116
BseSI	GKGCMC	1 cut(s)	542
BseXI	GCAGC	5 cut(s)	121, 461, 464, 562, 565
BseYI	CCCAGC	2 cut(s)	206, 445
Bsh1236I	CGCG	1 cut(s)	427
BshFI	GGCC	3 cut(s)	498, 540, 689
BshNI	GGYRCC	1 cut(s)	211
BsiSI	CCGG	1 cut(s)	686
BslFI	GGGAC	2 cut(s)	347, 610
BslI	CCNNNNNNNGG	1 cut(s)	331
BsmAI	GTCTC	3 cut(s)	51, 188, 371
BsmFI	GGGAC	2 cut(s)	347, 610
BsmI	GAATGC	1 cut(s)	25
BsnI	GGCC	3 cut(s)	498, 540, 689
Bsp120I	GGGCCC	1 cut(s)	538
Bsp1286I	GDGCHC	1 cut(s)	542
Bsp143I	GATC	2 cut(s)	569, 646
Bsp1720I	GCTNAGC	1 cut(s)	137
BspACI	CCGC	2 cut(s)	325, 546
BspANI	GGCC	3 cut(s)	498, 540, 689
BspCNI	CTCAG	3 cut(s)	184, 190, 648
BspFNI	CGCG	1 cut(s)	427
BspHI	TCATGA	1 cut(s)	649
BspLI	GGNNCC	3 cut(s)	213, 335, 540
BspMI	ACCTGC	2 cut(s)	382, 562
BspT107I	GGYRCC	1 cut(s)	211
BsrDI	GCAATG	2 cut(s)	309, 417
BssMI	GATC	2 cut(s)	569, 646
Bst6I	CTCTTC	2 cut(s)	306, 617
BstAPI	GCANNNNNTGC	1 cut(s)	554
BstC8I	GCNNGC	3 cut(s)	143, 281, 316
BstDEI	CTNAG	4 cut(s)	137, 192, 198, 635
BstF5I	GGATG	3 cut(s)	513, 538, 677
BstFNI	CGCG	1 cut(s)	427
BstHHI	GCGC	2 cut(s)	147, 429
BstKTI	GATC	2 cut(s)	572, 649
BstMAI	GTCTC	3 cut(s)	51, 188, 371
BstMBI	GATC	2 cut(s)	569, 646
BstMWI	GCNNNNNNNGC	3 cut(s)	142, 324, 554
BstNSI	RCATGY	2 cut(s)	493, 561
BstSCI	CCNGG	1 cut(s)	684
BstSLI	GKGCMC	1 cut(s)	542
BstUI	CGCG	1 cut(s)	427
BstV1I	GCAGC	5 cut(s)	121, 461, 464, 562, 565
BstV2I	GAAGAC	2 cut(s)	178, 530
BsuRI	GGCC	3 cut(s)	498, 540, 689
BtsCI	GGATG	3 cut(s)	513, 538, 677
BtsIMutI	CAGTG	1 cut(s)	189
BveI	ACCTGC	2 cut(s)	382, 562
Cac8I	GCNNGC	3 cut(s)	143, 281, 316
CaiI	CAGNNNCTG	1 cut(s)	578
CciI	TCATGA	1 cut(s)	649
CfoI	GCGC	2 cut(s)	147, 429
Cfr13I	GGNCC	4 cut(s)	334, 433, 538, 539
Csp6I	GTAC	2 cut(s)	212, 564
CviAII	CATG	7 cut(s)	164, 257, 437, 490, 500, 558, 650
CviQI	GTAC	2 cut(s)	212, 564
DdeI	CTNAG	4 cut(s)	137, 192, 198, 635
DpnI	GATC	2 cut(s)	571, 648
DpnII	GATC	2 cut(s)	569, 646
EaeI	YGGCCR	1 cut(s)	496
Eam1104I	CTCTTC	2 cut(s)	306, 617
EarI	CTCTTC	2 cut(s)	306, 617
Eco24I	GRGCYC	1 cut(s)	542
Eco47I	GGWCC	2 cut(s)	334, 433
Eco57I	CTGAAG	2 cut(s)	45, 663
EcoT38I	GRGCYC	1 cut(s)	542
FaeI	CATG	7 cut(s)	167, 260, 440, 493, 503, 561, 653
FaqI	GGGAC	2 cut(s)	347, 610
FatI	CATG	7 cut(s)	163, 256, 436, 489, 499, 557, 649
FauI	CCCGC	1 cut(s)	553
Fnu4HI	GCNGC	5 cut(s)	110, 450, 453, 576, 579
FokI	GGATG	3 cut(s)	520, 545, 664
FriOI	GRGCYC	1 cut(s)	542
Fsp4HI	GCNGC	5 cut(s)	110, 450, 453, 576, 579
FspBI	CTAG	2 cut(s)	588, 691
GlaI	GCGC	2 cut(s)	146, 428
GluI	GCNGC	5 cut(s)	110, 450, 453, 576, 579
GsaI	CCCAGC	2 cut(s)	210, 449
HaeIII	GGCC	3 cut(s)	498, 540, 689
HapII	CCGG	1 cut(s)	686
HhaI	GCGC	2 cut(s)	147, 429
Hin1II	CATG	7 cut(s)	167, 260, 440, 493, 503, 561, 653
Hin6I	GCGC	2 cut(s)	145, 427
HinP1I	GCGC	2 cut(s)	145, 427
HindIII	AAGCTT	1 cut(s)	139
HinfI	GANTC	3 cut(s)	79, 120, 662
HpaII	CCGG	1 cut(s)	686
HphI	GGTGA	2 cut(s)	28, 543
Hpy188I	TCNGA	1 cut(s)	638
Hpy188III	TCNNGA	4 cut(s)	49, 94, 229, 650
Hpy99I	CGWCG	1 cut(s)	520
HpyAV	CCTTC	1 cut(s)	281
HpyCH4V	TGCA	5 cut(s)	109, 368, 391, 410, 557
HpyF10VI	GCNNNNNNNGC	3 cut(s)	142, 324, 554
HpyF3I	CTNAG	4 cut(s)	137, 192, 198, 635
Hsp92II	CATG	7 cut(s)	167, 260, 440, 493, 503, 561, 653
HspAI	GCGC	2 cut(s)	145, 427
KpnI	GGTACC	1 cut(s)	215
Kzo9I	GATC	2 cut(s)	569, 646
LpnPI	CCDG	6 cut(s)	192, 328, 377, 459, 567, 580
Lsp1109I	GCAGC	5 cut(s)	121, 461, 464, 562, 565
LweI	GCATC	4 cut(s)	96, 378, 397, 557
MaeI	CTAG	2 cut(s)	588, 691
MalI	GATC	2 cut(s)	571, 648
MboI	GATC	2 cut(s)	569, 646
MhlI	GDGCHC	1 cut(s)	542
MlsI	TGGCCA	1 cut(s)	498
MluCI	AATT	1 cut(s)	126
MluNI	TGGCCA	1 cut(s)	498
MlyI	GAGTC	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	631
MnlI	CCTC	2 cut(s)	94, 160
Mox20I	TGGCCA	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	3 cut(s)	89, 293, 597
MslI	CAYNNNNRTG	1 cut(s)	556
Msp20I	TGGCCA	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	1 cut(s)	686
MspR9I	CCNGG	1 cut(s)	686
Mva1269I	GAATGC	1 cut(s)	25
MvnI	CGCG	1 cut(s)	427
MwoI	GCNNNNNNNGC	3 cut(s)	142, 324, 554
NciI	CCSGG	1 cut(s)	686
NdeII	GATC	2 cut(s)	569, 646
NlaIII	CATG	7 cut(s)	167, 260, 440, 493, 503, 561, 653
NlaIV	GGNNCC	3 cut(s)	213, 335, 540
NspI	RCATGY	2 cut(s)	493, 561
PagI	TCATGA	1 cut(s)	649
PaqCI	CACCTGC	2 cut(s)	382, 562
PciI	ACATGT	1 cut(s)	489
PcsI	WCGNNNNNNNCGW	1 cut(s)	524
PctI	GAATGC	1 cut(s)	25
PfeI	GAWTC	2 cut(s)	79, 662
PkrI	GCNGC	5 cut(s)	111, 451, 454, 577, 580
PleI	GAGTC	1 cut(s)	128
PpsI	GAGTC	1 cut(s)	128
PscI	ACATGT	1 cut(s)	489
PspFI	CCCAGC	2 cut(s)	206, 445
PspN4I	GGNNCC	3 cut(s)	213, 335, 540
PspOMI	GGGCCC	1 cut(s)	538
PspPI	GGNCC	4 cut(s)	334, 433, 538, 539
PstNI	CAGNNNCTG	1 cut(s)	578
PvuII	CAGCTG	1 cut(s)	575
RsaI	GTAC	2 cut(s)	213, 565
RsaNI	GTAC	2 cut(s)	212, 564
RseI	CAYNNNNRTG	1 cut(s)	556
SaqAI	TTAA	3 cut(s)	89, 293, 597
SatI	GCNGC	5 cut(s)	110, 450, 453, 576, 579
Sau3AI	GATC	2 cut(s)	569, 646
Sau96I	GGNCC	4 cut(s)	334, 433, 538, 539
SchI	GAGTC	1 cut(s)	129
ScrFI	CCNGG	1 cut(s)	686
SduI	GDGCHC	1 cut(s)	542
SetI	ASST	9 cut(s)	36, 138, 143, 285, 396, 435, 556, 577, 643
SfaNI	GCATC	4 cut(s)	96, 378, 397, 557
SinI	GGWCC	2 cut(s)	334, 433
SmiMI	CAYNNNNRTG	1 cut(s)	556
SmlI	CTYRAG	2 cut(s)	42, 227
SmoI	CTYRAG	2 cut(s)	42, 227
Sse9I	AATT	1 cut(s)	126
SsiI	CCGC	2 cut(s)	325, 546
SspMI	CTAG	2 cut(s)	588, 691
StyD4I	CCNGG	1 cut(s)	684
TaqI	TCGA	1 cut(s)	285
TasI	AATT	1 cut(s)	126
TfiI	GAWTC	2 cut(s)	79, 662
Tru1I	TTAA	3 cut(s)	89, 293, 597
Tru9I	TTAA	3 cut(s)	89, 293, 597
TscAI	CASTG	1 cut(s)	196
TseI	GCWGC	5 cut(s)	109, 449, 452, 575, 578
TspDTI	ATGAA	5 cut(s)	293, 298, 431, 453, 666
TspRI	CASTG	1 cut(s)	196
VpaK11BI	GGWCC	2 cut(s)	334, 433
XceI	RCATGY	2 cut(s)	493, 561
XspI	CTAG	2 cut(s)	588, 691

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.