Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0013121

Physical Location & Seq

Genomic Coordinates Reverse (-)

6934478 .. 6936967

Gene Structure 2490 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g08570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGAATGTTATTTTCATGCTACCACAAACCAAGTCCACAATTCAGGAAAAACCGATTATGTCCCCTGCAGCTAACTCATCATCATCATCATCAAGATGGTGCCCTGCCCCAGAGCAACTGATGCTCCTTGAAGAGATGTACAAGGCTGGAATCAGAACCCCCAATGCCTCTCAAATCCAACACATCACTGCCCAGCTCTCTTTCTATGGCAAGATTGAGGGCAAAAATGTGTTTTACTGGTTCCAGAACCACAAGGCAAGGGACAGACAGAAGCTTAGGAAAAAGCTTTGTAAGCAACTGCAGCAGCAGCAACTACTTTATCACCATCATAATTACCATAATTACCGTAACTGCCACTATGAGCAGCAGCTGAATCAGCAGACCTTTCTTGGTTGCCTTGAGTCCCCTCCTCCTGTCCCTTCTGCTCTTCATCATAAGCGACTTTCTACTTGTCATCATCACAATAACTACTCATCAACTGGGTTTCTTCCTCCTCAGGTCGGAGTTGAAGATGCCTTGATAAACTACACCTGGAAGATGGAGATCCCAGAGAAGGTGGAGAGGGAGAAGTCCGTGATGAGTATGTACGGTCGTGAGTGGATGATAATGATGATGAATGTAAGCCCACCATCCCCATGTTGCACTAGTTCAAGCAGCAGTACTACCACTACTACTACTTCTACACCACCACTCAAGACCCTTCAACTCTTCCCTATCACTGCCACTGATCTCAAAGAAGAATCCACACCCTCCCGCAGTGCTCTGTCTTCCTCCACCCTCACAGAAAATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

265

Amino Acids

30.25

Weight (kDa)

9.02

Isoelectric Point (pI)

81.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	31 - 90	6.4e-13	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28610
fragaria_vesca	FvH4_3g34410
malus_domestica	MD03G1106400.v1.1 MD11G1118500.v1.1
prunus_persica	Prupe.6G088900_v2.0.a1 Prupe.6G088900_v2.0.a1
pyrus_communis	pycom03g08570 pycom11g09980
rosa_chinensis	RchiOBHm_Chr5g0062001
rosa_laevigata	RLG00000035525
rosa_multiflora	Rmu_sc0002296.1_g000004
rosa_roxburghii	Rroxscaffold_1G00018700
rosa_rugosa	Rorug05G0345400
rosa_samantha	Rh5AG406700 Rh5BG420100 Rh5CG444200 Rh5DG435500
rosa_wichuraiana	Rw5G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	99
AciI	CCGC	1 cut(s)	754
AclWI	GGATC	1 cut(s)	538
AfaI	GTAC	3 cut(s)	140, 587, 661
AfiI	CCNNNNNNNGG	2 cut(s)	500, 553
AgsI	TTSAA	4 cut(s)	131, 509, 651, 704
AhlI	ACTAGT	1 cut(s)	644
AjnI	CCWGG	1 cut(s)	530
AluBI	AGCT	5 cut(s)	71, 196, 274, 286, 370
AluI	AGCT	5 cut(s)	71, 196, 274, 286, 370
Alw21I	GWGCWC	1 cut(s)	763
AlwI	GGATC	1 cut(s)	538
AlwNI	CAGNNNCTG	1 cut(s)	370
ApeKI	GCWGC	7 cut(s)	68, 301, 304, 307, 364, 367, 654
AsuHPI	GGTGA	1 cut(s)	314
AxyI	CCTNAGG	1 cut(s)	495
BaeGI	GKGCMC	1 cut(s)	104
BanI	GGYRCC	1 cut(s)	99
BbsI	GAAGAC	1 cut(s)	759
Bbv12I	GWGCWC	1 cut(s)	763
BbvI	GCAGC	7 cut(s)	80, 313, 316, 319, 376, 379, 666
BccI	CCATC	4 cut(s)	90, 333, 532, 637
BciT130I	CCWGG	1 cut(s)	532
BcuI	ACTAGT	1 cut(s)	644
BfaI	CTAG	1 cut(s)	645
BfmI	CTRYAG	2 cut(s)	66, 299
BisI	GCNGC	7 cut(s)	69, 302, 305, 308, 365, 368, 655
BlsI	GCNGC	7 cut(s)	70, 303, 306, 309, 366, 369, 656
BmcAI	AGTACT	1 cut(s)	661
Bme1390I	CCNGG	1 cut(s)	532
BmiI	GGNNCC	2 cut(s)	101, 242
BmrFI	CCNGG	1 cut(s)	532
BmrI	ACTGGG	1 cut(s)	489
BmsI	GCATC	2 cut(s)	111, 502
BmuI	ACTGGG	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	759
Bpu10I	CCTNAGC	1 cut(s)	275
BpuEI	CTTGAG	2 cut(s)	419, 677
BsaBI	GATNNNNATC	1 cut(s)	542
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	2 cut(s)	500, 553
Bse1I	ACTGG	2 cut(s)	242, 484
Bse21I	CCTNAGG	1 cut(s)	495
Bse8I	GATNNNNATC	1 cut(s)	542
BseBI	CCWGG	1 cut(s)	532
BseGI	GGATG	2 cut(s)	606, 629
BseJI	GATNNNNATC	1 cut(s)	542
BseLI	CCNNNNNNNGG	2 cut(s)	500, 553
BseMII	CTCAG	1 cut(s)	509
BseNI	ACTGG	2 cut(s)	242, 484
BseRI	GAGGAG	2 cut(s)	399, 483
BseSI	GKGCMC	1 cut(s)	104
BseXI	GCAGC	7 cut(s)	80, 313, 316, 319, 376, 379, 666
BseYI	CCCAGC	1 cut(s)	192
Bsh1285I	CGRYCG	1 cut(s)	592
BshNI	GGYRCC	1 cut(s)	99
BsiEI	CGRYCG	1 cut(s)	592
BsiHKAI	GWGCWC	1 cut(s)	763
BslFI	GGGAC	4 cut(s)	46, 275, 388, 401
BslI	CCNNNNNNNGG	2 cut(s)	500, 553
BsmFI	GGGAC	4 cut(s)	46, 275, 388, 401
Bsp1286I	GDGCHC	2 cut(s)	104, 763
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	2 cut(s)	543, 727
BspACI	CCGC	1 cut(s)	754
BspCNI	CTCAG	1 cut(s)	508
BspLI	GGNNCC	2 cut(s)	101, 242
BspMAI	CTGCAG	2 cut(s)	70, 303
BspPI	GGATC	1 cut(s)	538
BspQI	GCTCTTC	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	99
BsrGI	TGTACA	1 cut(s)	138
BsrI	ACTGG	2 cut(s)	242, 484
BssMI	GATC	2 cut(s)	543, 727
Bst2UI	CCWGG	1 cut(s)	532
Bst4CI	ACNGT	2 cut(s)	347, 590
Bst6I	CTCTTC	3 cut(s)	126, 432, 713
BstAPI	GCANNNNNTGC	1 cut(s)	121
BstAUI	TGTACA	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	275, 495
BstF5I	GGATG	2 cut(s)	606, 629
BstKTI	GATC	2 cut(s)	546, 730
BstMBI	GATC	2 cut(s)	543, 727
BstMCI	CGRYCG	1 cut(s)	592
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 292, 301, 307, 376
BstNI	CCWGG	1 cut(s)	532
BstSCI	CCNGG	1 cut(s)	530
BstSFI	CTRYAG	2 cut(s)	66, 299
BstSLI	GKGCMC	1 cut(s)	104
BstV1I	GCAGC	7 cut(s)	80, 313, 316, 319, 376, 379, 666
BstV2I	GAAGAC	1 cut(s)	759
BstX2I	RGATCY	1 cut(s)	543
BstYI	RGATCY	1 cut(s)	543
Bsu36I	CCTNAGG	1 cut(s)	495
BtsCI	GGATG	2 cut(s)	606, 629
BtsI	GCAGTG	3 cut(s)	186, 717, 763
BtsIMutI	CAGTG	4 cut(s)	186, 717, 723, 763
CaiI	CAGNNNCTG	1 cut(s)	370
Csp6I	GTAC	3 cut(s)	139, 586, 660
CviAII	CATG	2 cut(s)	16, 636
CviJI	RGCY	7 cut(s)	71, 146, 196, 274, 286, 370, 624
CviKI_1	RGCY	7 cut(s)	71, 146, 196, 274, 286, 370, 624
CviQI	GTAC	3 cut(s)	139, 586, 660
DdeI	CTNAG	2 cut(s)	275, 495
DpnI	GATC	2 cut(s)	545, 729
DpnII	GATC	2 cut(s)	543, 727
Eam1104I	CTCTTC	3 cut(s)	126, 432, 713
EarI	CTCTTC	3 cut(s)	126, 432, 713
Eco81I	CCTNAGG	1 cut(s)	495
EcoRII	CCWGG	1 cut(s)	530
FaeI	CATG	2 cut(s)	19, 639
FaiI	YATR	9 cut(s)	17, 59, 207, 330, 339, 360, 435, 584, 637
FaqI	GGGAC	4 cut(s)	46, 275, 388, 401
FatI	CATG	2 cut(s)	15, 635
FauI	CCCGC	1 cut(s)	761
Fnu4HI	GCNGC	7 cut(s)	69, 302, 305, 308, 365, 368, 655
FokI	GGATG	2 cut(s)	613, 616
Fsp4HI	GCNGC	7 cut(s)	69, 302, 305, 308, 365, 368, 655
FspBI	CTAG	1 cut(s)	645
GluI	GCNGC	7 cut(s)	69, 302, 305, 308, 365, 368, 655
GsaI	CCCAGC	1 cut(s)	196
Hin1II	CATG	2 cut(s)	19, 639
HindIII	AAGCTT	2 cut(s)	272, 284
HinfI	GANTC	4 cut(s)	150, 373, 401, 740
HphI	GGTGA	1 cut(s)	314
Hpy166II	GTNNAC	1 cut(s)	36
Hpy188I	TCNGA	2 cut(s)	155, 503
Hpy188III	TCNNGA	5 cut(s)	44, 93, 244, 593, 694
Hpy8I	GTNNAC	1 cut(s)	36
HpyAV	CCTTC	3 cut(s)	429, 547, 710
HpyCH4III	ACNGT	2 cut(s)	347, 590
HpyCH4V	TGCA	3 cut(s)	68, 301, 642
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 292, 301, 307, 376
HpyF3I	CTNAG	2 cut(s)	275, 495
Hsp92II	CATG	2 cut(s)	19, 639
Kzo9I	GATC	2 cut(s)	543, 727
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	1 cut(s)	129
Lsp1109I	GCAGC	7 cut(s)	80, 313, 316, 319, 376, 379, 666
LweI	GCATC	2 cut(s)	111, 502
MaeI	CTAG	1 cut(s)	645
MaeIII	GTNAC	1 cut(s)	347
MalI	GATC	2 cut(s)	545, 729
MboI	GATC	2 cut(s)	543, 727
MboII	GAAGA	8 cut(s)	143, 419, 479, 521, 547, 700, 749, 759
MflI	RGATCY	1 cut(s)	543
MhlI	GDGCHC	2 cut(s)	104, 763
MluCI	AATT	3 cut(s)	39, 331, 340
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	2 cut(s)	202, 481
MslI	CAYNNNNRTG	2 cut(s)	94, 634
MspA1I	CMGCKG	1 cut(s)	370
MspR9I	CCNGG	1 cut(s)	532
MvaI	CCWGG	1 cut(s)	532
MwoI	GCNNNNNNNGC	5 cut(s)	121, 292, 301, 307, 376
NdeII	GATC	2 cut(s)	543, 727
NlaIII	CATG	2 cut(s)	19, 639
NlaIV	GGNNCC	2 cut(s)	101, 242
PciSI	GCTCTTC	1 cut(s)	432
PfeI	GAWTC	3 cut(s)	150, 373, 740
PkrI	GCNGC	7 cut(s)	70, 303, 306, 309, 366, 369, 656
PleI	GAGTC	1 cut(s)	409
PpsI	GAGTC	1 cut(s)	409
Psp6I	CCWGG	1 cut(s)	530
PspFI	CCCAGC	1 cut(s)	192
PspGI	CCWGG	1 cut(s)	530
PspN4I	GGNNCC	2 cut(s)	101, 242
PstI	CTGCAG	2 cut(s)	70, 303
PstNI	CAGNNNCTG	1 cut(s)	370
PsuI	RGATCY	1 cut(s)	543
PvuII	CAGCTG	1 cut(s)	370
RsaI	GTAC	3 cut(s)	140, 587, 661
RsaNI	GTAC	3 cut(s)	139, 586, 660
RseI	CAYNNNNRTG	2 cut(s)	94, 634
SapI	GCTCTTC	1 cut(s)	432
SatI	GCNGC	7 cut(s)	69, 302, 305, 308, 365, 368, 655
Sau3AI	GATC	2 cut(s)	543, 727
ScaI	AGTACT	1 cut(s)	661
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	532
SduI	GDGCHC	2 cut(s)	104, 763
SetI	ASST	9 cut(s)	73, 198, 276, 288, 372, 386, 501, 533, 558
SfaNI	GCATC	2 cut(s)	111, 502
SfcI	CTRYAG	2 cut(s)	66, 299
SmiMI	CAYNNNNRTG	2 cut(s)	94, 634
SmlI	CTYRAG	2 cut(s)	398, 692
SmoI	CTYRAG	2 cut(s)	398, 692
SpeI	ACTAGT	1 cut(s)	644
Sse9I	AATT	3 cut(s)	39, 331, 340
SsiI	CCGC	1 cut(s)	754
SspMI	CTAG	1 cut(s)	645
StyD4I	CCNGG	1 cut(s)	530
TaaI	ACNGT	2 cut(s)	347, 590
TasI	AATT	3 cut(s)	39, 331, 340
TatI	WGTACW	2 cut(s)	138, 659
TfiI	GAWTC	3 cut(s)	150, 373, 740
TscAI	CASTG	4 cut(s)	193, 724, 730, 763
TseI	GCWGC	7 cut(s)	68, 301, 304, 307, 364, 367, 654
TspDTI	ATGAA	4 cut(s)	4, 17, 419, 629
TspGWI	ACGGA	1 cut(s)	562
TspRI	CASTG	4 cut(s)	193, 724, 730, 763
XspI	CTAG	1 cut(s)	645
ZrmI	AGTACT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.