Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0013121

Physical Location & Seq

Genomic Coordinates Forward (+)

29857932 .. 29859794

Gene Structure 1863 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34410.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGCCTCCTGCAGCGAATTTTTCAGCTTCTTCTTCTTCAGCATCATCCTCAAGATGGTGCCCAACCCCAGAGCAACTGATGATCCTTGAAGAGATGTATAGGGCTGGAGTCAGAACTCCCAATGCTTCCCAAATTCAACACATCACTACCCAGCTCTCTTACTATGGAAAGATTGAGGGCAAGAATGTGTTCTACTGGTTTCAGAACCACAAGGCAAGGGACAGACAAAAGCTTAGGAGGAAGCTTTGCAAGCAACTTCATCTTCAACAGCAACAACTCTACCATAATTATTACCATTCTCAACATCATCACCCACAGCAGCTAATGCTCAACCAGCAGAGCCTTCTAGGGTACCTTGATCAGTCTCCTCCTGCTTCTTCTGTTCTTCATCAGCTGCCGCTTTGTTGCCATCATCATAACTTATTTTCCGGTACCGGTTTTCTCCCTCAGGTGGGAGTTGAGGATGCATTGATGAACTTCACGCGCAAGGTCCATGAAATCCCATCAGCAACAGCAGAGAGATCGGAGATGGAGAAGTCGGTGATTAACATGTATGGCCATGATTGGATGACGACGACGACAGCAACGATGGATCTGGCCCCATCCTCATCACCTGCATGTTGTATCAGATCAGCTACTGCTACTCCTCCCAGACCCCTCAAAACCCTCCAACTCTTCCCCATCAAGTCCTCTAGTCTCAGAGCTGAAGATCATGAAGAAGGAGAAGAATCTACATCTTCACCATCCAACCCTAGAAACTATATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

256

Amino Acids

28.95

Weight (kDa)

8.5

Isoelectric Point (pI)

77.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	17 - 76	4.3e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28610
fragaria_vesca	FvH4_3g34410
malus_domestica	MD03G1106400.v1.1 MD11G1118500.v1.1
prunus_persica	Prupe.6G088900_v2.0.a1 Prupe.6G088900_v2.0.a1
pyrus_communis	pycom03g08570 pycom11g09980
rosa_chinensis	RchiOBHm_Chr5g0062001
rosa_laevigata	RLG00000035525
rosa_multiflora	Rmu_sc0002296.1_g000004
rosa_roxburghii	Rroxscaffold_1G00018700
rosa_rugosa	Rorug05G0345400
rosa_samantha	Rh5AG406700 Rh5BG420100 Rh5CG444200 Rh5DG435500
rosa_wichuraiana	Rw5G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	622
Acc36I	ACCTGC	1 cut(s)	622
Acc65I	GGTACC	2 cut(s)	351, 431
AccB1I	GGYRCC	3 cut(s)	57, 351, 431
AccII	CGCG	1 cut(s)	484
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	2 cut(s)	76, 600
AcoI	YGGCCR	1 cut(s)	556
AcsI	RAATTY	2 cut(s)	16, 132
AcuI	CTGAAG	2 cut(s)	21, 726
AfaI	GTAC	2 cut(s)	353, 433
AfiI	CCNNNNNNNGG	3 cut(s)	54, 451, 452
AflIII	ACRYGT	1 cut(s)	549
AgeI	ACCGGT	1 cut(s)	434
AgsI	TTSAA	3 cut(s)	89, 137, 266
AluBI	AGCT	8 cut(s)	26, 154, 232, 244, 322, 394, 635, 704
AluI	AGCT	8 cut(s)	26, 154, 232, 244, 322, 394, 635, 704
Alw26I	GTCTC	2 cut(s)	369, 701
AlwI	GGATC	2 cut(s)	76, 600
AlwNI	CAGNNNCTG	1 cut(s)	638
AoxI	GGCC	2 cut(s)	556, 597
ApeKI	GCWGC	3 cut(s)	11, 319, 394
ApoI	RAATTY	2 cut(s)	16, 132
AsiGI	ACCGGT	1 cut(s)	434
Asp700I	GAANNNNTTC	1 cut(s)	188
Asp718I	GGTACC	2 cut(s)	351, 431
AspLEI	GCGC	1 cut(s)	486
AspS9I	GGNCC	2 cut(s)	490, 598
AsuHPI	GGTGA	4 cut(s)	302, 553, 603, 732
AvaII	GGWCC	1 cut(s)	490
AxyI	CCTNAGG	1 cut(s)	447
BaeGI	GKGCMC	1 cut(s)	62
BalI	TGGCCA	1 cut(s)	558
BanI	GGYRCC	3 cut(s)	57, 351, 431
BbvI	GCAGC	3 cut(s)	23, 331, 381
BccI	CCATC	8 cut(s)	48, 417, 511, 523, 583, 610, 689, 751
BcgI	CGANNNNNNTGC	2 cut(s)	504, 538
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	2 cut(s)	369, 701
BfaI	CTAG	3 cut(s)	347, 693, 753
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	4 cut(s)	12, 320, 395, 398
BlsI	GCNGC	4 cut(s)	13, 321, 396, 399
Bme18I	GGWCC	1 cut(s)	490
BmgT120I	GGNCC	2 cut(s)	490, 598
BmiI	GGNNCC	4 cut(s)	59, 353, 433, 600
BmsI	GCATC	2 cut(s)	50, 454
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	34
BsaWI	WCCGGW	2 cut(s)	428, 434
BsaXI	ACNNNNNCTCC	2 cut(s)	628, 658
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 451, 452
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	1 cut(s)	200
Bse21I	CCTNAGG	1 cut(s)	447
BseGI	GGATG	5 cut(s)	44, 469, 573, 602, 743
BseLI	CCNNNNNNNGG	3 cut(s)	54, 451, 452
BseMII	CTCAG	2 cut(s)	461, 712
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	2 cut(s)	357, 636
BseSI	GKGCMC	1 cut(s)	62
BseXI	GCAGC	3 cut(s)	23, 331, 381
BseYI	CCCAGC	1 cut(s)	150
Bsh1236I	CGCG	1 cut(s)	484
BshFI	GGCC	2 cut(s)	558, 599
BshNI	GGYRCC	3 cut(s)	57, 351, 431
BshTI	ACCGGT	1 cut(s)	434
BsiSI	CCGG	2 cut(s)	429, 435
BslFI	GGGAC	1 cut(s)	233
BslI	CCNNNNNNNGG	3 cut(s)	54, 451, 452
BsmAI	GTCTC	2 cut(s)	369, 701
BsmFI	GGGAC	1 cut(s)	233
BsnI	GGCC	2 cut(s)	558, 599
Bsp1286I	GDGCHC	1 cut(s)	62
Bsp143I	GATC	6 cut(s)	81, 358, 521, 592, 629, 709
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	2 cut(s)	558, 599
BspCNI	CTCAG	2 cut(s)	460, 711
BspFNI	CGCG	1 cut(s)	484
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	4 cut(s)	59, 353, 433, 600
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	622
BspPI	GGATC	2 cut(s)	76, 600
BspT107I	GGYRCC	3 cut(s)	57, 351, 431
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	434
BssMI	GATC	6 cut(s)	81, 358, 521, 592, 629, 709
Bst6I	CTCTTC	2 cut(s)	84, 680
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstC8I	GCNNGC	1 cut(s)	251
BstDEI	CTNAG	3 cut(s)	233, 447, 698
BstF5I	GGATG	5 cut(s)	44, 469, 573, 602, 743
BstFNI	CGCG	1 cut(s)	484
BstHHI	GCGC	1 cut(s)	486
BstKTI	GATC	6 cut(s)	84, 361, 524, 595, 632, 712
BstMAI	GTCTC	2 cut(s)	369, 701
BstMBI	GATC	6 cut(s)	81, 358, 521, 592, 629, 709
BstMWI	GCNNNNNNNGC	3 cut(s)	250, 325, 334
BstNSI	RCATGY	2 cut(s)	553, 621
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	1 cut(s)	62
BstUI	CGCG	1 cut(s)	484
BstV1I	GCAGC	3 cut(s)	23, 331, 381
BstX2I	RGATCY	1 cut(s)	592
BstYI	RGATCY	1 cut(s)	592
Bsu36I	CCTNAGG	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	558, 599
BtsCI	GGATG	5 cut(s)	44, 469, 573, 602, 743
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	1 cut(s)	251
CaiI	CAGNNNCTG	1 cut(s)	638
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	1 cut(s)	486
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	490, 598
Csp6I	GTAC	2 cut(s)	352, 432
CspAI	ACCGGT	1 cut(s)	434
CviAII	CATG	5 cut(s)	494, 550, 560, 618, 713
CviQI	GTAC	2 cut(s)	352, 432
DdeI	CTNAG	3 cut(s)	233, 447, 698
DpnI	GATC	6 cut(s)	83, 360, 523, 594, 631, 711
DpnII	GATC	6 cut(s)	81, 358, 521, 592, 629, 709
EaeI	YGGCCR	1 cut(s)	556
Eam1104I	CTCTTC	2 cut(s)	84, 680
EarI	CTCTTC	2 cut(s)	84, 680
Eco47I	GGWCC	1 cut(s)	490
Eco57I	CTGAAG	2 cut(s)	21, 726
Eco81I	CCTNAGG	1 cut(s)	447
EcoT22I	ATGCAT	1 cut(s)	469
FaeI	CATG	5 cut(s)	497, 553, 563, 621, 716
FaqI	GGGAC	1 cut(s)	233
FatI	CATG	5 cut(s)	493, 549, 559, 617, 712
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	4 cut(s)	12, 320, 395, 398
FokI	GGATG	5 cut(s)	31, 476, 580, 589, 730
Fsp4HI	GCNGC	4 cut(s)	12, 320, 395, 398
FspBI	CTAG	3 cut(s)	347, 693, 753
GlaI	GCGC	1 cut(s)	485
GluI	GCNGC	4 cut(s)	12, 320, 395, 398
GsaI	CCCAGC	1 cut(s)	154
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	558, 599
HapII	CCGG	2 cut(s)	429, 435
HhaI	GCGC	1 cut(s)	486
Hin1II	CATG	5 cut(s)	497, 553, 563, 621, 716
Hin6I	GCGC	1 cut(s)	484
HinP1I	GCGC	1 cut(s)	484
HindIII	AAGCTT	2 cut(s)	230, 242
HinfI	GANTC	2 cut(s)	108, 728
HpaII	CCGG	2 cut(s)	429, 435
HphI	GGTGA	4 cut(s)	302, 553, 603, 732
Hpy188I	TCNGA	5 cut(s)	113, 204, 526, 629, 701
Hpy188III	TCNNGA	2 cut(s)	51, 713
Hpy99I	CGWCG	2 cut(s)	577, 580
HpyAV	CCTTC	2 cut(s)	353, 713
HpyCH4V	TGCA	4 cut(s)	11, 249, 467, 617
HpyF10VI	GCNNNNNNNGC	3 cut(s)	250, 325, 334
HpyF3I	CTNAG	3 cut(s)	233, 447, 698
Hsp92II	CATG	5 cut(s)	497, 553, 563, 621, 716
HspAI	GCGC	1 cut(s)	484
KpnI	GGTACC	2 cut(s)	355, 435
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	6 cut(s)	81, 358, 521, 592, 629, 709
Lsp1109I	GCAGC	3 cut(s)	23, 331, 381
LweI	GCATC	2 cut(s)	50, 454
MaeI	CTAG	3 cut(s)	347, 693, 753
MalI	GATC	6 cut(s)	83, 360, 523, 594, 631, 711
MboI	GATC	6 cut(s)	81, 358, 521, 592, 629, 709
MflI	RGATCY	1 cut(s)	592
MhlI	GDGCHC	1 cut(s)	62
MlsI	TGGCCA	1 cut(s)	558
MluCI	AATT	3 cut(s)	16, 132, 286
MluNI	TGGCCA	1 cut(s)	558
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	1 cut(s)	694
Mox20I	TGGCCA	1 cut(s)	558
Mph1103I	ATGCAT	1 cut(s)	469
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	558
MseI	TTAA	2 cut(s)	546, 766
MslI	CAYNNNNRTG	1 cut(s)	616
Msp20I	TGGCCA	1 cut(s)	558
MspA1I	CMGCKG	1 cut(s)	394
MspI	CCGG	2 cut(s)	429, 435
MvnI	CGCG	1 cut(s)	484
MwoI	GCNNNNNNNGC	3 cut(s)	250, 325, 334
NdeII	GATC	6 cut(s)	81, 358, 521, 592, 629, 709
NlaIII	CATG	5 cut(s)	497, 553, 563, 621, 716
NlaIV	GGNNCC	4 cut(s)	59, 353, 433, 600
NsiI	ATGCAT	1 cut(s)	469
NspI	RCATGY	2 cut(s)	553, 621
PagI	TCATGA	1 cut(s)	712
PaqCI	CACCTGC	1 cut(s)	622
PciI	ACATGT	1 cut(s)	549
PcsI	WCGNNNNNNNCGW	1 cut(s)	584
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	728
PinAI	ACCGGT	1 cut(s)	434
PkrI	GCNGC	4 cut(s)	13, 321, 396, 399
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PscI	ACATGT	1 cut(s)	549
PspFI	CCCAGC	1 cut(s)	150
PspN4I	GGNNCC	4 cut(s)	59, 353, 433, 600
PspPI	GGNCC	2 cut(s)	490, 598
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	638
PsuI	RGATCY	1 cut(s)	592
PvuII	CAGCTG	1 cut(s)	394
RsaI	GTAC	2 cut(s)	353, 433
RsaNI	GTAC	2 cut(s)	352, 432
RseI	CAYNNNNRTG	1 cut(s)	616
SaqAI	TTAA	2 cut(s)	546, 766
SatI	GCNGC	4 cut(s)	12, 320, 395, 398
Sau3AI	GATC	6 cut(s)	81, 358, 521, 592, 629, 709
Sau96I	GGNCC	2 cut(s)	490, 598
SchI	GAGTC	1 cut(s)	117
SduI	GDGCHC	1 cut(s)	62
SfaNI	GCATC	2 cut(s)	50, 454
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	490
SmiMI	CAYNNNNRTG	1 cut(s)	616
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	3 cut(s)	16, 132, 286
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	3 cut(s)	347, 693, 753
TasI	AATT	3 cut(s)	16, 132, 286
TauI	GCSGC	1 cut(s)	400
TfiI	GAWTC	1 cut(s)	728
Tru1I	TTAA	2 cut(s)	546, 766
Tru9I	TTAA	2 cut(s)	546, 766
TseI	GCWGC	3 cut(s)	11, 319, 394
TspDTI	ATGAA	5 cut(s)	248, 377, 488, 510, 729
VpaK11BI	GGWCC	1 cut(s)	490
XapI	RAATTY	2 cut(s)	16, 132
XceI	RCATGY	2 cut(s)	553, 621
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	3 cut(s)	347, 693, 753
Zsp2I	ATGCAT	1 cut(s)	469

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.