Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0013121

Physical Location & Seq

Genomic Coordinates Reverse (-)

6087660 .. 6090438

Gene Structure 2779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G088900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGCCCCTCTCAGGGAAGCAGAGCATGACCACCCTTACTCCTGCAAATTCTTCATCAAGATGGTGCCCAACCCCAGAGCAACTGATGATCCTTGAGGAGATGTACAGGGCTGGCATCAGAACCCCCAATGCCTCTCAAATCCAACACATCACTGCCCAGCTCTCCCTCTATGGCAAGATTGAGGGCAAAAATGTATTTTACTGGTTCCAGAACCACAAGGCCAGGGACAGGCAGAAGCTCAGGAGGAAGCTTTGTAAGCAACTGCAGCAACAGCAACTTCTCTATAATCACCACCACAATTATCATAATTACCATAATAACCCTTATCATCATCATCATCATCACCAGCAGCAGCAGCAGCAGCAGCAGAGCCTTCTTGGGTACCTTGATCATCTCAGCCCTCCTGCTTCTTCTTCTGCTCTTCAACAACTTTCCAACTGTCATAACTACTCGTCAGCTGGCTTTCTTCCTCCTCCTCAGGTGGGAGTTGAAGATGCCTTGATGAACCAGGCGTGGAAGATGGAGATCCCACAGAGGGTGGAGATGGAGAAGTCCGTGATGAGTATGTACGGCCGTGATTGGATGATGATGATGATGATGGAGGATGTGGGCCCACCCTCTCCATGTTGTAGTACTAGTACAAGAGCTACTACTACTAGACAACCCCTCAAGACCCTTCAACTCTTCCCCATCACTGCCACCAATCTCAAAGAAGAATCCTCCTCACCCTCCTCCTCCAATCCTCTCTCTCCTCCCACCACCCCCACACCAAATTACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

260

Amino Acids

29.75

Weight (kDa)

9.07

Isoelectric Point (pI)

78.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28610
fragaria_vesca	FvH4_3g34410
malus_domestica	MD03G1106400.v1.1 MD11G1118500.v1.1
prunus_persica	Prupe.6G088900_v2.0.a1 Prupe.6G088900_v2.0.a1
pyrus_communis	pycom03g08570 pycom11g09980
rosa_chinensis	RchiOBHm_Chr5g0062001
rosa_laevigata	RLG00000035525
rosa_multiflora	Rmu_sc0002296.1_g000004
rosa_roxburghii	Rroxscaffold_1G00018700
rosa_rugosa	Rorug05G0345400
rosa_samantha	Rh5AG406700 Rh5BG420100 Rh5CG444200 Rh5DG435500
rosa_wichuraiana	Rw5G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	381
AccB1I	GGYRCC	2 cut(s)	63, 381
AclWI	GGATC	2 cut(s)	82, 520
AcoI	YGGCCR	1 cut(s)	571
AcsI	RAATTY	1 cut(s)	46
AfaI	GTAC	5 cut(s)	104, 383, 569, 634, 640
AfiI	CCNNNNNNNGG	5 cut(s)	11, 12, 228, 482, 535
AgsI	TTSAA	3 cut(s)	425, 491, 680
AhlI	ACTAGT	1 cut(s)	635
AjnI	CCWGG	2 cut(s)	221, 507
AluBI	AGCT	5 cut(s)	160, 238, 250, 458, 647
AluI	AGCT	5 cut(s)	160, 238, 250, 458, 647
AlwI	GGATC	2 cut(s)	82, 520
AoxI	GGCC	3 cut(s)	219, 571, 610
ApaI	GGGCCC	1 cut(s)	614
ApeKI	GCWGC	7 cut(s)	265, 349, 352, 355, 358, 361, 364
ApoI	RAATTY	1 cut(s)	46
Asp718I	GGTACC	1 cut(s)	381
AspS9I	GGNCC	2 cut(s)	610, 611
AsuHPI	GGTGA	3 cut(s)	281, 335, 717
AxyI	CCTNAGG	1 cut(s)	477
BaeGI	GKGCMC	2 cut(s)	68, 614
BanI	GGYRCC	2 cut(s)	63, 381
BanII	GRGCYC	1 cut(s)	614
BbvI	GCAGC	7 cut(s)	277, 361, 364, 367, 370, 373, 376
BccI	CCATC	5 cut(s)	54, 514, 538, 592, 698
BceAI	ACGGC	2 cut(s)	558, 586
BciT130I	CCWGG	2 cut(s)	223, 509
BclI	TGATCA	1 cut(s)	388
BcuI	ACTAGT	1 cut(s)	635
BfaI	CTAG	2 cut(s)	636, 657
BfmI	CTRYAG	1 cut(s)	263
BisI	GCNGC	7 cut(s)	266, 350, 353, 356, 359, 362, 365
BlsI	GCNGC	7 cut(s)	267, 351, 354, 357, 360, 363, 366
BmcAI	AGTACT	1 cut(s)	634
Bme1390I	CCNGG	2 cut(s)	223, 509
BmgT120I	GGNCC	2 cut(s)	610, 611
BmiI	GGNNCC	4 cut(s)	65, 206, 383, 612
BmrFI	CCNGG	2 cut(s)	223, 509
BmsI	GCATC	2 cut(s)	123, 484
Bpu10I	CCTNAGC	1 cut(s)	239
BpuEI	CTTGAG	2 cut(s)	113, 653
BsaBI	GATNNNNATC	1 cut(s)	524
BsaJI	CCNNGG	1 cut(s)	222
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	5 cut(s)	11, 12, 228, 482, 535
Bse1I	ACTGG	1 cut(s)	206
Bse21I	CCTNAGG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	524
BseBI	CCWGG	2 cut(s)	223, 509
BseDI	CCNNGG	1 cut(s)	222
BseGI	GGATG	2 cut(s)	588, 610
BseJI	GATNNNNATC	1 cut(s)	524
BseLI	CCNNNNNNNGG	5 cut(s)	11, 12, 228, 482, 535
BseMII	CTCAG	4 cut(s)	24, 253, 409, 491
BseNI	ACTGG	1 cut(s)	206
BseRI	GAGGAG	7 cut(s)	110, 462, 465, 712, 721, 724, 741
BseSI	GKGCMC	2 cut(s)	68, 614
BseX3I	CGGCCG	1 cut(s)	571
BseXI	GCAGC	7 cut(s)	277, 361, 364, 367, 370, 373, 376
BseYI	CCCAGC	1 cut(s)	156
Bsh1285I	CGRYCG	1 cut(s)	574
BshFI	GGCC	3 cut(s)	221, 573, 612
BshNI	GGYRCC	2 cut(s)	63, 381
BsiEI	CGRYCG	1 cut(s)	574
BslFI	GGGAC	1 cut(s)	239
BslI	CCNNNNNNNGG	5 cut(s)	11, 12, 228, 482, 535
BsmFI	GGGAC	1 cut(s)	239
BsnI	GGCC	3 cut(s)	221, 573, 612
Bsp120I	GGGCCC	1 cut(s)	610
Bsp1286I	GDGCHC	2 cut(s)	68, 614
Bsp1407I	TGTACA	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	87, 388, 525
BspANI	GGCC	3 cut(s)	221, 573, 612
BspCNI	CTCAG	4 cut(s)	23, 252, 408, 490
BspLI	GGNNCC	4 cut(s)	65, 206, 383, 612
BspMAI	CTGCAG	1 cut(s)	267
BspPI	GGATC	2 cut(s)	82, 520
BspQI	GCTCTTC	1 cut(s)	426
BspT107I	GGYRCC	2 cut(s)	63, 381
BsrGI	TGTACA	1 cut(s)	102
BsrI	ACTGG	1 cut(s)	206
BssECI	CCNNGG	1 cut(s)	222
BssMI	GATC	3 cut(s)	87, 388, 525
Bst2UI	CCWGG	2 cut(s)	223, 509
Bst4CI	ACNGT	1 cut(s)	440
Bst6I	CTCTTC	2 cut(s)	426, 689
BstAUI	TGTACA	1 cut(s)	102
BstC8I	GCNNGC	2 cut(s)	112, 460
BstDEI	CTNAG	4 cut(s)	10, 239, 395, 477
BstF5I	GGATG	2 cut(s)	588, 610
BstKTI	GATC	3 cut(s)	90, 391, 528
BstMBI	GATC	3 cut(s)	87, 388, 525
BstMCI	CGRYCG	1 cut(s)	574
BstMWI	GCNNNNNNNGC	7 cut(s)	256, 265, 271, 355, 358, 361, 364
BstNI	CCWGG	2 cut(s)	223, 509
BstSCI	CCNGG	2 cut(s)	221, 507
BstSFI	CTRYAG	1 cut(s)	263
BstSLI	GKGCMC	2 cut(s)	68, 614
BstV1I	GCAGC	7 cut(s)	277, 361, 364, 367, 370, 373, 376
BstX2I	RGATCY	1 cut(s)	525
BstYI	RGATCY	1 cut(s)	525
BstZI	CGGCCG	1 cut(s)	571
Bsu36I	CCTNAGG	1 cut(s)	477
BsuRI	GGCC	3 cut(s)	221, 573, 612
BtsCI	GGATG	2 cut(s)	588, 610
BtsI	GCAGTG	2 cut(s)	150, 693
BtsIMutI	CAGTG	2 cut(s)	150, 693
Cac8I	GCNNGC	2 cut(s)	112, 460
Cfr13I	GGNCC	2 cut(s)	610, 611
Csp6I	GTAC	5 cut(s)	103, 382, 568, 633, 639
CviAII	CATG	2 cut(s)	25, 624
CviQI	GTAC	5 cut(s)	103, 382, 568, 633, 639
DdeI	CTNAG	4 cut(s)	10, 239, 395, 477
DpnI	GATC	3 cut(s)	89, 390, 527
DpnII	GATC	3 cut(s)	87, 388, 525
EaeI	YGGCCR	1 cut(s)	571
EagI	CGGCCG	1 cut(s)	571
Eam1104I	CTCTTC	2 cut(s)	426, 689
EarI	CTCTTC	2 cut(s)	426, 689
EclXI	CGGCCG	1 cut(s)	571
Eco24I	GRGCYC	1 cut(s)	614
Eco52I	CGGCCG	1 cut(s)	571
Eco81I	CCTNAGG	1 cut(s)	477
EcoRII	CCWGG	2 cut(s)	221, 507
EcoT38I	GRGCYC	1 cut(s)	614
FaeI	CATG	2 cut(s)	28, 627
FaiI	YATR	8 cut(s)	26, 171, 285, 306, 315, 444, 566, 625
FaqI	GGGAC	1 cut(s)	239
FatI	CATG	2 cut(s)	24, 623
FbaI	TGATCA	1 cut(s)	388
Fnu4HI	GCNGC	7 cut(s)	266, 350, 353, 356, 359, 362, 365
FokI	GGATG	2 cut(s)	595, 617
FriOI	GRGCYC	1 cut(s)	614
Fsp4HI	GCNGC	7 cut(s)	266, 350, 353, 356, 359, 362, 365
FspBI	CTAG	2 cut(s)	636, 657
GluI	GCNGC	7 cut(s)	266, 350, 353, 356, 359, 362, 365
GsaI	CCCAGC	1 cut(s)	160
HaeIII	GGCC	3 cut(s)	221, 573, 612
Hin1II	CATG	2 cut(s)	28, 627
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	1 cut(s)	716
HphI	GGTGA	3 cut(s)	281, 335, 717
Hpy188I	TCNGA	1 cut(s)	119
Hpy188III	TCNNGA	4 cut(s)	57, 208, 241, 670
HpyAV	CCTTC	2 cut(s)	383, 686
HpyCH4III	ACNGT	1 cut(s)	440
HpyCH4V	TGCA	2 cut(s)	44, 265
HpyF10VI	GCNNNNNNNGC	7 cut(s)	256, 265, 271, 355, 358, 361, 364
HpyF3I	CTNAG	4 cut(s)	10, 239, 395, 477
Hsp92II	CATG	2 cut(s)	28, 627
KpnI	GGTACC	1 cut(s)	385
Ksp22I	TGATCA	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	87, 388, 525
LguI	GCTCTTC	1 cut(s)	426
Lsp1109I	GCAGC	7 cut(s)	277, 361, 364, 367, 370, 373, 376
LweI	GCATC	2 cut(s)	123, 484
MaeI	CTAG	2 cut(s)	636, 657
MalI	GATC	3 cut(s)	89, 390, 527
MboI	GATC	3 cut(s)	87, 388, 525
MboII	GAAGA	9 cut(s)	42, 402, 405, 413, 458, 503, 529, 676, 725
MflI	RGATCY	1 cut(s)	525
MhlI	GDGCHC	2 cut(s)	68, 614
MluCI	AATT	4 cut(s)	46, 298, 307, 772
MmeI	TCCRAC	2 cut(s)	166, 459
MslI	CAYNNNNRTG	1 cut(s)	58
MspA1I	CMGCKG	1 cut(s)	458
MspR9I	CCNGG	2 cut(s)	223, 509
MvaI	CCWGG	2 cut(s)	223, 509
MwoI	GCNNNNNNNGC	7 cut(s)	256, 265, 271, 355, 358, 361, 364
NdeII	GATC	3 cut(s)	87, 388, 525
NlaIII	CATG	2 cut(s)	28, 627
NlaIV	GGNNCC	4 cut(s)	65, 206, 383, 612
PciSI	GCTCTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	716
PkrI	GCNGC	7 cut(s)	267, 351, 354, 357, 360, 363, 366
Psp6I	CCWGG	2 cut(s)	221, 507
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	2 cut(s)	221, 507
PspN4I	GGNNCC	4 cut(s)	65, 206, 383, 612
PspOMI	GGGCCC	1 cut(s)	610
PspPI	GGNCC	2 cut(s)	610, 611
PstI	CTGCAG	1 cut(s)	267
PsuI	RGATCY	1 cut(s)	525
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	5 cut(s)	104, 383, 569, 634, 640
RsaNI	GTAC	5 cut(s)	103, 382, 568, 633, 639
RseI	CAYNNNNRTG	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	426
SatI	GCNGC	7 cut(s)	266, 350, 353, 356, 359, 362, 365
Sau3AI	GATC	3 cut(s)	87, 388, 525
Sau96I	GGNCC	2 cut(s)	610, 611
ScaI	AGTACT	1 cut(s)	634
ScrFI	CCNGG	2 cut(s)	223, 509
SduI	GDGCHC	2 cut(s)	68, 614
SetI	ASST	7 cut(s)	162, 240, 252, 387, 460, 483, 649
SfaNI	GCATC	2 cut(s)	123, 484
SfcI	CTRYAG	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	58
SmlI	CTYRAG	2 cut(s)	92, 668
SmoI	CTYRAG	2 cut(s)	92, 668
SpeI	ACTAGT	1 cut(s)	635
Sse9I	AATT	4 cut(s)	46, 298, 307, 772
SspMI	CTAG	2 cut(s)	636, 657
StyD4I	CCNGG	2 cut(s)	221, 507
TaaI	ACNGT	1 cut(s)	440
TasI	AATT	4 cut(s)	46, 298, 307, 772
TatI	WGTACW	3 cut(s)	102, 632, 638
TfiI	GAWTC	1 cut(s)	716
TscAI	CASTG	2 cut(s)	157, 700
TseI	GCWGC	7 cut(s)	265, 349, 352, 355, 358, 361, 364
TspDTI	ATGAA	2 cut(s)	42, 518
TspGWI	ACGGA	1 cut(s)	544
TspRI	CASTG	2 cut(s)	157, 700
XapI	RAATTY	1 cut(s)	46
XspI	CTAG	2 cut(s)	636, 657
ZrmI	AGTACT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.