Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0013121

Physical Location & Seq

Genomic Coordinates Reverse (-)

9129343 .. 9132568

Gene Structure 3226 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1106400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGAATGTTATTTTCAAGGTAAATCTAAAATCTAACACTGTATACTTCCTCTTTGTCTATCTATTTATACCTCCCCCTACTTCAACCCTTCACTCTCCACAACCACACCAAAAACCCTACTTTAGTTTCTTTGTGTACGTACAGCTACCACAAACCAAGTCCACAATTCAAGAAAAACCGATTATGTCCCCTGCAGCTAACTCATCATCATCATCAAGATGGTGCCCTGCCCCAAAGCAACTGATGCTCCTTGAAGAGATGTACAGGGCTGGAATCAGAACCCCCAATGCCTCTCAAATCCAACACATCACTGCCCAGCTCTCTTTCTATGGCAAGATTGAGGGCAAAAATGTGTTTTACTGGTTCCAGAACCACAAGGCAAGGGACAGACAGAAGCTTAGGAGAAAGCTTTGTAAGCAACTGCAGCAGCAGCAACTACTTTATCACCATCATAATTACCATAATTACCGTAACTGCCACTATGAGCAGCAGCTGAATCAGCAGACCTTTCTTGGTTACCTTGAGACCCCTCCTCCTGTCCCTTCCGCTCTTCATCATAAGCAACTTTATACTTGTCATCATCACAATAACTACTCATCAACTGGGTTTCTTCCTCCTCAGGTGGGAGTTGAAGATGCCATGATAAACTACACCTGGAAGATGGAGATCCCAGAGAAGGTGGAGATGGAGAAGCCCGTGATGAGTATGTACGGTCGTGAGTGGATGATGATGATGATGATGGATGTAAGCCCACCATCCCCATGTTGCACTAGTTCAAGCAGCAGTACTACTACTACTACTACTACTACTACTACTACTACTTCTACACCACCCCTCAAGACCCTTCAACTCTTCCCTATCACTGCCACTGATCTCAAAGAAGAATCCACAGCCTCCCACAGTGCTCTGTCTTCCTCCACCCTCATAGACAATCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

313

Amino Acids

36.02

Weight (kDa)

9.09

Isoelectric Point (pI)

65.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	72 - 131	2.5e-12	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28610
fragaria_vesca	FvH4_3g34410
malus_domestica	MD03G1106400.v1.1 MD11G1118500.v1.1
prunus_persica	Prupe.6G088900_v2.0.a1 Prupe.6G088900_v2.0.a1
pyrus_communis	pycom03g08570 pycom11g09980
rosa_chinensis	RchiOBHm_Chr5g0062001
rosa_laevigata	RLG00000035525
rosa_multiflora	Rmu_sc0002296.1_g000004
rosa_roxburghii	Rroxscaffold_1G00018700
rosa_rugosa	Rorug05G0345400
rosa_samantha	Rh5AG406700 Rh5BG420100 Rh5CG444200 Rh5DG435500
rosa_wichuraiana	Rw5G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	222
AccBSI	CCGCTC	1 cut(s)	548
AccI	GTMKAC	1 cut(s)	42
AciI	CCGC	1 cut(s)	546
AclWI	GGATC	1 cut(s)	661
AfaI	GTAC	5 cut(s)	137, 141, 263, 710, 787
AfiI	CCNNNNNNNGG	2 cut(s)	623, 676
AgsI	TTSAA	7 cut(s)	16, 84, 170, 254, 632, 777, 848
AhlI	ACTAGT	1 cut(s)	770
AjnI	CCWGG	1 cut(s)	653
AluBI	AGCT	6 cut(s)	145, 197, 319, 397, 409, 493
AluI	AGCT	6 cut(s)	145, 197, 319, 397, 409, 493
Alw21I	GWGCWC	1 cut(s)	907
Alw26I	GTCTC	1 cut(s)	518
AlwI	GGATC	1 cut(s)	661
AlwNI	CAGNNNCTG	1 cut(s)	493
ApeKI	GCWGC	7 cut(s)	194, 424, 427, 430, 487, 490, 780
AsuHPI	GGTGA	1 cut(s)	437
AxyI	CCTNAGG	1 cut(s)	618
BaeGI	GKGCMC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	222
BbsI	GAAGAC	1 cut(s)	903
Bbv12I	GWGCWC	1 cut(s)	907
BbvI	GCAGC	7 cut(s)	206, 436, 439, 442, 499, 502, 792
BccI	CCATC	6 cut(s)	213, 456, 655, 679, 733, 763
BciT130I	CCWGG	1 cut(s)	655
BcoDI	GTCTC	1 cut(s)	518
BcuI	ACTAGT	1 cut(s)	770
BfaI	CTAG	1 cut(s)	771
BfmI	CTRYAG	2 cut(s)	192, 422
BisI	GCNGC	7 cut(s)	195, 425, 428, 431, 488, 491, 781
BlsI	GCNGC	7 cut(s)	196, 426, 429, 432, 489, 492, 782
BmcAI	AGTACT	1 cut(s)	787
Bme1390I	CCNGG	1 cut(s)	655
BmiI	GGNNCC	2 cut(s)	224, 365
BmrFI	CCNGG	1 cut(s)	655
BmrI	ACTGGG	1 cut(s)	612
BmsI	GCATC	2 cut(s)	234, 625
BmuI	ACTGGG	1 cut(s)	612
BpiI	GAAGAC	1 cut(s)	903
Bpu10I	CCTNAGC	1 cut(s)	398
BpuEI	CTTGAG	2 cut(s)	542, 821
BsaAI	YACGTR	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	665
BsaI	GGTCTC	1 cut(s)	518
BsaXI	ACNNNNNCTCC	4 cut(s)	231, 261, 517, 547
Bsc4I	CCNNNNNNNGG	2 cut(s)	623, 676
Bse1I	ACTGG	2 cut(s)	365, 607
Bse21I	CCTNAGG	1 cut(s)	618
Bse8I	GATNNNNATC	1 cut(s)	665
BseBI	CCWGG	1 cut(s)	655
BseGI	GGATG	3 cut(s)	729, 748, 755
BseJI	GATNNNNATC	1 cut(s)	665
BseLI	CCNNNNNNNGG	2 cut(s)	623, 676
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	2 cut(s)	365, 607
BseRI	GAGGAG	2 cut(s)	522, 606
BseSI	GKGCMC	1 cut(s)	227
BseXI	GCAGC	7 cut(s)	206, 436, 439, 442, 499, 502, 792
BseYI	CCCAGC	1 cut(s)	315
Bsh1285I	CGRYCG	1 cut(s)	715
BshNI	GGYRCC	1 cut(s)	222
BsiEI	CGRYCG	1 cut(s)	715
BsiHKAI	GWGCWC	1 cut(s)	907
BslFI	GGGAC	3 cut(s)	172, 398, 524
BslI	CCNNNNNNNGG	2 cut(s)	623, 676
BsmAI	GTCTC	1 cut(s)	518
BsmFI	GGGAC	3 cut(s)	172, 398, 524
Bso31I	GGTCTC	1 cut(s)	518
Bsp1286I	GDGCHC	2 cut(s)	227, 907
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	666, 871
BspACI	CCGC	1 cut(s)	546
BspCNI	CTCAG	1 cut(s)	631
BspLI	GGNNCC	2 cut(s)	224, 365
BspMAI	CTGCAG	2 cut(s)	196, 426
BspPI	GGATC	1 cut(s)	661
BspQI	GCTCTTC	1 cut(s)	555
BspT107I	GGYRCC	1 cut(s)	222
BspTNI	GGTCTC	1 cut(s)	518
BsrBI	CCGCTC	1 cut(s)	548
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	365, 607
BssMI	GATC	2 cut(s)	666, 871
BssNAI	GTATAC	1 cut(s)	43
Bst1107I	GTATAC	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	655
Bst4CI	ACNGT	4 cut(s)	40, 470, 713, 902
Bst6I	CTCTTC	3 cut(s)	249, 555, 857
BstAPI	GCANNNNNTGC	1 cut(s)	244
BstAUI	TGTACA	1 cut(s)	261
BstBAI	YACGTR	1 cut(s)	139
BstDEI	CTNAG	2 cut(s)	398, 618
BstEII	GGTNACC	1 cut(s)	515
BstF5I	GGATG	3 cut(s)	729, 748, 755
BstKTI	GATC	2 cut(s)	669, 874
BstMAI	GTCTC	1 cut(s)	518
BstMBI	GATC	2 cut(s)	666, 871
BstMCI	CGRYCG	1 cut(s)	715
BstMWI	GCNNNNNNNGC	5 cut(s)	244, 415, 424, 430, 499
BstNI	CCWGG	1 cut(s)	655
BstPI	GGTNACC	1 cut(s)	515
BstSCI	CCNGG	1 cut(s)	653
BstSFI	CTRYAG	2 cut(s)	192, 422
BstSLI	GKGCMC	1 cut(s)	227
BstSNI	TACGTA	1 cut(s)	139
BstV1I	GCAGC	7 cut(s)	206, 436, 439, 442, 499, 502, 792
BstV2I	GAAGAC	1 cut(s)	903
BstX2I	RGATCY	1 cut(s)	666
BstYI	RGATCY	1 cut(s)	666
BstZ17I	GTATAC	1 cut(s)	43
Bsu36I	CCTNAGG	1 cut(s)	618
BtsCI	GGATG	3 cut(s)	729, 748, 755
BtsI	GCAGTG	2 cut(s)	309, 861
BtsIMutI	CAGTG	5 cut(s)	36, 309, 861, 867, 907
CaiI	CAGNNNCTG	1 cut(s)	493
Csp6I	GTAC	5 cut(s)	136, 140, 262, 709, 786
CviAII	CATG	2 cut(s)	640, 762
CviQI	GTAC	5 cut(s)	136, 140, 262, 709, 786
DdeI	CTNAG	2 cut(s)	398, 618
DpnI	GATC	2 cut(s)	668, 873
DpnII	GATC	2 cut(s)	666, 871
Eam1104I	CTCTTC	3 cut(s)	249, 555, 857
EarI	CTCTTC	3 cut(s)	249, 555, 857
Eco105I	TACGTA	1 cut(s)	139
Eco31I	GGTCTC	1 cut(s)	518
Eco81I	CCTNAGG	1 cut(s)	618
Eco91I	GGTNACC	1 cut(s)	515
EcoO65I	GGTNACC	1 cut(s)	515
EcoRII	CCWGG	1 cut(s)	653
FaeI	CATG	2 cut(s)	643, 765
FaqI	GGGAC	3 cut(s)	172, 398, 524
FatI	CATG	2 cut(s)	639, 761
FblI	GTMKAC	1 cut(s)	42
Fnu4HI	GCNGC	7 cut(s)	195, 425, 428, 431, 488, 491, 781
FokI	GGATG	3 cut(s)	736, 742, 755
Fsp4HI	GCNGC	7 cut(s)	195, 425, 428, 431, 488, 491, 781
FspBI	CTAG	1 cut(s)	771
GluI	GCNGC	7 cut(s)	195, 425, 428, 431, 488, 491, 781
GsaI	CCCAGC	1 cut(s)	319
Hin1II	CATG	2 cut(s)	643, 765
HindIII	AAGCTT	2 cut(s)	395, 407
HinfI	GANTC	3 cut(s)	273, 496, 884
HphI	GGTGA	1 cut(s)	437
Hpy166II	GTNNAC	3 cut(s)	43, 136, 162
Hpy188I	TCNGA	1 cut(s)	278
Hpy188III	TCNNGA	5 cut(s)	170, 216, 367, 716, 838
Hpy8I	GTNNAC	3 cut(s)	43, 136, 162
HpyAV	CCTTC	4 cut(s)	98, 552, 670, 854
HpyCH4III	ACNGT	4 cut(s)	40, 470, 713, 902
HpyCH4IV	ACGT	1 cut(s)	138
HpyCH4V	TGCA	3 cut(s)	194, 424, 768
HpyF10VI	GCNNNNNNNGC	5 cut(s)	244, 415, 424, 430, 499
HpyF3I	CTNAG	2 cut(s)	398, 618
HpySE526I	ACGT	1 cut(s)	138
Hsp92II	CATG	2 cut(s)	643, 765
Kzo9I	GATC	2 cut(s)	666, 871
LguI	GCTCTTC	1 cut(s)	555
LmnI	GCTCC	1 cut(s)	252
Lsp1109I	GCAGC	7 cut(s)	206, 436, 439, 442, 499, 502, 792
LweI	GCATC	2 cut(s)	234, 625
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	1 cut(s)	138
MaeIII	GTNAC	2 cut(s)	470, 515
MalI	GATC	2 cut(s)	668, 873
MbiI	CCGCTC	1 cut(s)	548
MboI	GATC	2 cut(s)	666, 871
MboII	GAAGA	8 cut(s)	266, 542, 602, 644, 670, 844, 893, 903
MflI	RGATCY	1 cut(s)	666
MhlI	GDGCHC	2 cut(s)	227, 907
MluCI	AATT	3 cut(s)	165, 454, 463
MmeI	TCCRAC	1 cut(s)	325
MslI	CAYNNNNRTG	2 cut(s)	217, 760
MspA1I	CMGCKG	1 cut(s)	493
MspR9I	CCNGG	1 cut(s)	655
MvaI	CCWGG	1 cut(s)	655
MwoI	GCNNNNNNNGC	5 cut(s)	244, 415, 424, 430, 499
NdeII	GATC	2 cut(s)	666, 871
NlaIII	CATG	2 cut(s)	643, 765
NlaIV	GGNNCC	2 cut(s)	224, 365
PciSI	GCTCTTC	1 cut(s)	555
PfeI	GAWTC	3 cut(s)	273, 496, 884
PkrI	GCNGC	7 cut(s)	196, 426, 429, 432, 489, 492, 782
Ppu21I	YACGTR	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	653
PspEI	GGTNACC	1 cut(s)	515
PspFI	CCCAGC	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	653
PspN4I	GGNNCC	2 cut(s)	224, 365
PstI	CTGCAG	2 cut(s)	196, 426
PstNI	CAGNNNCTG	1 cut(s)	493
PsuI	RGATCY	1 cut(s)	666
PvuII	CAGCTG	1 cut(s)	493
RsaI	GTAC	5 cut(s)	137, 141, 263, 710, 787
RsaNI	GTAC	5 cut(s)	136, 140, 262, 709, 786
RseI	CAYNNNNRTG	2 cut(s)	217, 760
SapI	GCTCTTC	1 cut(s)	555
SatI	GCNGC	7 cut(s)	195, 425, 428, 431, 488, 491, 781
Sau3AI	GATC	2 cut(s)	666, 871
ScaI	AGTACT	1 cut(s)	787
ScrFI	CCNGG	1 cut(s)	655
SduI	GDGCHC	2 cut(s)	227, 907
SfaNI	GCATC	2 cut(s)	234, 625
SfcI	CTRYAG	2 cut(s)	192, 422
SmiMI	CAYNNNNRTG	2 cut(s)	217, 760
SmlI	CTYRAG	2 cut(s)	521, 836
SmoI	CTYRAG	2 cut(s)	521, 836
SnaBI	TACGTA	1 cut(s)	139
SpeI	ACTAGT	1 cut(s)	770
Sse9I	AATT	3 cut(s)	165, 454, 463
SsiI	CCGC	1 cut(s)	546
SspMI	CTAG	1 cut(s)	771
StyD4I	CCNGG	1 cut(s)	653
TaaI	ACNGT	4 cut(s)	40, 470, 713, 902
TaiI	ACGT	1 cut(s)	141
TasI	AATT	3 cut(s)	165, 454, 463
TatI	WGTACW	2 cut(s)	261, 785
TfiI	GAWTC	3 cut(s)	273, 496, 884
TscAI	CASTG	5 cut(s)	43, 316, 868, 874, 907
TseI	GCWGC	7 cut(s)	194, 424, 427, 430, 487, 490, 780
TspDTI	ATGAA	2 cut(s)	17, 542
TspRI	CASTG	5 cut(s)	43, 316, 868, 874, 907
XmiI	GTMKAC	1 cut(s)	42
XspI	CTAG	1 cut(s)	771
ZrmI	AGTACT	1 cut(s)	787

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.