Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0013121

Physical Location & Seq

Genomic Coordinates Forward (+)

70330487 .. 70331542

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG406700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCTCAACCAGCAGAGCCTTCTAGGTTGCCTTGATCAGTCCCCTTCTGCTTCTTCTGTTCTTCATCAGCCGCTTTGTTGTCATCATCATAACTTATCAGCTGGCTTTCTTCCTCAGGTGGGAGTTGAAGATGCATTGATGAACTACACGCGCAAGGTCCATGAAATCCCAGCAGCAGCAGAGAGATTGGAGATGGAGAAGTCGGTGCTGAACATGTATGGCCATGATTGGATGATGACGACGAAGAAGACGATGGATGTGGGCCCACCCGCATCACCTGCATGTTGTACCAGATCAGCTGCTGCTGCTGCTGCTACTCCTAGACCCCTTAAAACACTCCAACTCTTCCCCATCAAGTCCCCTAATCTCAGAGCTGAAGATCATGAAGAAGAAGAATCTACATCTACACCATCCAACCCGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

141

Amino Acids

15.33

Weight (kDa)

5.93

Isoelectric Point (pI)

71.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28610
fragaria_vesca	FvH4_3g34410
malus_domestica	MD03G1106400.v1.1 MD11G1118500.v1.1
prunus_persica	Prupe.6G088900_v2.0.a1 Prupe.6G088900_v2.0.a1
pyrus_communis	pycom03g08570 pycom11g09980
rosa_chinensis	RchiOBHm_Chr5g0062001
rosa_laevigata	RLG00000035525
rosa_multiflora	Rmu_sc0002296.1_g000004
rosa_roxburghii	Rroxscaffold_1G00018700
rosa_rugosa	Rorug05G0345400
rosa_samantha	Rh5AG406700 Rh5BG420100 Rh5CG444200 Rh5DG435500
rosa_wichuraiana	Rw5G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	286
Acc36I	ACCTGC	1 cut(s)	286
AccII	CGCG	1 cut(s)	151
AciI	CCGC	2 cut(s)	71, 270
AcoI	YGGCCR	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	396
AfaI	GTAC	1 cut(s)	289
AfiI	CCNNNNNNNGG	1 cut(s)	119
AflIII	ACRYGT	1 cut(s)	213
AgsI	TTSAA	1 cut(s)	128
AluBI	AGCT	3 cut(s)	101, 299, 374
AluI	AGCT	3 cut(s)	101, 299, 374
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	3 cut(s)	220, 262, 420
ApaI	GGGCCC	1 cut(s)	266
ApeKI	GCWGC	7 cut(s)	173, 176, 299, 302, 305, 308, 311
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	3 cut(s)	157, 262, 263
AsuC2I	CCSGG	1 cut(s)	419
AsuHPI	GGTGA	1 cut(s)	267
AvaII	GGWCC	1 cut(s)	157
AxyI	CCTNAGG	1 cut(s)	114
BaeGI	GKGCMC	1 cut(s)	266
BalI	TGGCCA	1 cut(s)	222
BanII	GRGCYC	1 cut(s)	266
BbsI	GAAGAC	1 cut(s)	254
BbvI	GCAGC	7 cut(s)	185, 188, 286, 289, 292, 295, 298
BccI	CCATC	4 cut(s)	187, 247, 359, 418
BclI	TGATCA	1 cut(s)	34
BcnI	CCSGG	1 cut(s)	419
BfaI	CTAG	3 cut(s)	23, 321, 424
BfuAI	ACCTGC	1 cut(s)	286
BisI	GCNGC	8 cut(s)	71, 174, 177, 300, 303, 306, 309, 312
BlsI	GCNGC	8 cut(s)	72, 175, 178, 301, 304, 307, 310, 313
Bme1390I	CCNGG	1 cut(s)	419
Bme18I	GGWCC	1 cut(s)	157
BmgT120I	GGNCC	3 cut(s)	157, 262, 263
BmiI	GGNNCC	1 cut(s)	264
BmrFI	CCNGG	1 cut(s)	419
BmsI	GCATC	2 cut(s)	121, 281
BpiI	GAAGAC	1 cut(s)	254
BpuMI	CCSGG	1 cut(s)	419
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse21I	CCTNAGG	1 cut(s)	114
BseGI	GGATG	3 cut(s)	237, 262, 410
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	2 cut(s)	128, 382
BseSI	GKGCMC	1 cut(s)	266
BseXI	GCAGC	7 cut(s)	185, 188, 286, 289, 292, 295, 298
BseYI	CCCAGC	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	151
BshFI	GGCC	3 cut(s)	222, 264, 422
BsiSI	CCGG	1 cut(s)	419
BslFI	GGGAC	2 cut(s)	25, 343
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmFI	GGGAC	2 cut(s)	25, 343
BsnI	GGCC	3 cut(s)	222, 264, 422
Bsp120I	GGGCCC	1 cut(s)	262
Bsp1286I	GDGCHC	1 cut(s)	266
Bsp143I	GATC	3 cut(s)	34, 293, 379
BspACI	CCGC	2 cut(s)	71, 270
BspANI	GGCC	3 cut(s)	222, 264, 422
BspCNI	CTCAG	2 cut(s)	127, 381
BspFNI	CGCG	1 cut(s)	151
BspHI	TCATGA	1 cut(s)	382
BspLI	GGNNCC	1 cut(s)	264
BspMI	ACCTGC	1 cut(s)	286
BssMI	GATC	3 cut(s)	34, 293, 379
Bst6I	CTCTTC	1 cut(s)	350
BstAPI	GCANNNNNTGC	1 cut(s)	278
BstC8I	GCNNGC	1 cut(s)	103
BstDEI	CTNAG	2 cut(s)	114, 368
BstF5I	GGATG	3 cut(s)	237, 262, 410
BstFNI	CGCG	1 cut(s)	151
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	3 cut(s)	37, 296, 382
BstMBI	GATC	3 cut(s)	34, 293, 379
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 278, 305, 308, 311
BstNSI	RCATGY	2 cut(s)	217, 285
BstSCI	CCNGG	1 cut(s)	417
BstSLI	GKGCMC	1 cut(s)	266
BstUI	CGCG	1 cut(s)	151
BstV1I	GCAGC	7 cut(s)	185, 188, 286, 289, 292, 295, 298
BstV2I	GAAGAC	1 cut(s)	254
Bsu36I	CCTNAGG	1 cut(s)	114
BsuRI	GGCC	3 cut(s)	222, 264, 422
BtsCI	GGATG	3 cut(s)	237, 262, 410
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	1 cut(s)	103
CaiI	CAGNNNCTG	1 cut(s)	302
CciI	TCATGA	1 cut(s)	382
CfoI	GCGC	1 cut(s)	153
Cfr13I	GGNCC	3 cut(s)	157, 262, 263
Csp6I	GTAC	1 cut(s)	288
CviAII	CATG	5 cut(s)	161, 214, 224, 282, 383
CviJI	RGCY	9 cut(s)	18, 70, 101, 105, 222, 264, 299, 374, 422
CviKI_1	RGCY	9 cut(s)	18, 70, 101, 105, 222, 264, 299, 374, 422
CviQI	GTAC	1 cut(s)	288
DdeI	CTNAG	2 cut(s)	114, 368
DpnI	GATC	3 cut(s)	36, 295, 381
DpnII	GATC	3 cut(s)	34, 293, 379
EaeI	YGGCCR	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	350
EarI	CTCTTC	1 cut(s)	350
Eco24I	GRGCYC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	157
Eco57I	CTGAAG	1 cut(s)	396
Eco81I	CCTNAGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	136
EcoT38I	GRGCYC	1 cut(s)	266
FaeI	CATG	5 cut(s)	164, 217, 227, 285, 386
FaiI	YATR	7 cut(s)	90, 162, 215, 219, 225, 283, 384
FaqI	GGGAC	2 cut(s)	25, 343
FatI	CATG	5 cut(s)	160, 213, 223, 281, 382
FauI	CCCGC	1 cut(s)	277
FbaI	TGATCA	1 cut(s)	34
Fnu4HI	GCNGC	8 cut(s)	71, 174, 177, 300, 303, 306, 309, 312
FokI	GGATG	3 cut(s)	244, 269, 397
FriOI	GRGCYC	1 cut(s)	266
Fsp4HI	GCNGC	8 cut(s)	71, 174, 177, 300, 303, 306, 309, 312
FspBI	CTAG	3 cut(s)	23, 321, 424
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	8 cut(s)	71, 174, 177, 300, 303, 306, 309, 312
GsaI	CCCAGC	1 cut(s)	173
HaeIII	GGCC	3 cut(s)	222, 264, 422
HapII	CCGG	1 cut(s)	419
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	5 cut(s)	164, 217, 227, 285, 386
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HinfI	GANTC	1 cut(s)	395
HpaII	CCGG	1 cut(s)	419
HphI	GGTGA	1 cut(s)	267
Hpy188I	TCNGA	1 cut(s)	371
Hpy188III	TCNNGA	1 cut(s)	383
Hpy99I	CGWCG	1 cut(s)	244
HpyAV	CCTTC	2 cut(s)	29, 54
HpyCH4V	TGCA	2 cut(s)	134, 281
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 278, 305, 308, 311
HpyF3I	CTNAG	2 cut(s)	114, 368
Hsp92II	CATG	5 cut(s)	164, 217, 227, 285, 386
HspAI	GCGC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	34
Kzo9I	GATC	3 cut(s)	34, 293, 379
LpnPI	CCDG	6 cut(s)	23, 87, 101, 183, 291, 304
Lsp1109I	GCAGC	7 cut(s)	185, 188, 286, 289, 292, 295, 298
LweI	GCATC	2 cut(s)	121, 281
MaeI	CTAG	3 cut(s)	23, 321, 424
MalI	GATC	3 cut(s)	36, 295, 381
MboI	GATC	3 cut(s)	34, 293, 379
MhlI	GDGCHC	1 cut(s)	266
MlsI	TGGCCA	1 cut(s)	222
MluNI	TGGCCA	1 cut(s)	222
MmeI	TCCRAC	1 cut(s)	364
MnlI	CCTC	1 cut(s)	123
Mox20I	TGGCCA	1 cut(s)	222
Mph1103I	ATGCAT	1 cut(s)	136
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	1 cut(s)	330
MslI	CAYNNNNRTG	1 cut(s)	280
Msp20I	TGGCCA	1 cut(s)	222
MspA1I	CMGCKG	2 cut(s)	101, 299
MspI	CCGG	1 cut(s)	419
MspR9I	CCNGG	1 cut(s)	419
MvnI	CGCG	1 cut(s)	151
MwoI	GCNNNNNNNGC	5 cut(s)	10, 278, 305, 308, 311
NciI	CCSGG	1 cut(s)	419
NdeII	GATC	3 cut(s)	34, 293, 379
NlaIII	CATG	5 cut(s)	164, 217, 227, 285, 386
NlaIV	GGNNCC	1 cut(s)	264
NsiI	ATGCAT	1 cut(s)	136
NspI	RCATGY	2 cut(s)	217, 285
PagI	TCATGA	1 cut(s)	382
PaqCI	CACCTGC	1 cut(s)	286
PciI	ACATGT	1 cut(s)	213
PcsI	WCGNNNNNNNCGW	1 cut(s)	248
PfeI	GAWTC	1 cut(s)	395
PkrI	GCNGC	8 cut(s)	72, 175, 178, 301, 304, 307, 310, 313
PscI	ACATGT	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	169
PspN4I	GGNNCC	1 cut(s)	264
PspOMI	GGGCCC	1 cut(s)	262
PspPI	GGNCC	3 cut(s)	157, 262, 263
PstNI	CAGNNNCTG	1 cut(s)	302
PvuII	CAGCTG	2 cut(s)	101, 299
RsaI	GTAC	1 cut(s)	289
RsaNI	GTAC	1 cut(s)	288
RseI	CAYNNNNRTG	1 cut(s)	280
SaqAI	TTAA	1 cut(s)	330
SatI	GCNGC	8 cut(s)	71, 174, 177, 300, 303, 306, 309, 312
Sau3AI	GATC	3 cut(s)	34, 293, 379
Sau96I	GGNCC	3 cut(s)	157, 262, 263
ScrFI	CCNGG	1 cut(s)	419
SduI	GDGCHC	1 cut(s)	266
SetI	ASST	7 cut(s)	28, 103, 120, 159, 280, 301, 376
SfaNI	GCATC	2 cut(s)	121, 281
SinI	GGWCC	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	280
SsiI	CCGC	2 cut(s)	71, 270
SspMI	CTAG	3 cut(s)	23, 321, 424
StyD4I	CCNGG	1 cut(s)	417
TauI	GCSGC	1 cut(s)	73
TfiI	GAWTC	1 cut(s)	395
Tru1I	TTAA	1 cut(s)	330
Tru9I	TTAA	1 cut(s)	330
TseI	GCWGC	7 cut(s)	173, 176, 299, 302, 305, 308, 311
TspDTI	ATGAA	4 cut(s)	53, 155, 177, 399
VpaK11BI	GGWCC	1 cut(s)	157
XceI	RCATGY	2 cut(s)	217, 285
XspI	CTAG	3 cut(s)	23, 321, 424
Zsp2I	ATGCAT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.