Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0013121

Physical Location & Seq

Genomic Coordinates Forward (+)

67593933 .. 67595321

Gene Structure 1389 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G038330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTCTCCTGCAGCTAATTTTGCTGCTTCTTCATCCTCAAGATGGTGCCCAACCCCAGAGCAACTGATGATCCTTGAAGAGATGTACAGGGCTGGAGTCAGAACTCCAAATGCTTCCCAAATCCAACAAATCACTGCCCAGCTCTCTTTCTATGGAAAGATTGAGGGCAAGAATGTGTTCTACTGGTTCCAAAACCACAAGGCAAGGGACAGACAAAAGCTTAGGAGGAAGCTTTGCAAGCAACTTCAACTTCAACTTCAACAGCAACAACTCTATCATAATTATTACCATTGTCAACATCATCATCAACAGCAGCTAATGCTCAACCAGCAGAGCCTTCTAGGTTACCTTGATCAGTCCCCTTCTGCTTCTTCTGTTCTTCATCAGTCGCTTTGTTGTCATCATCATAACTTATCAGCTGGCTTTCTTCCTCAGGTGGGAGTTGAAGATGAAATGATGAACTACACGCGCAAGGTCCATGAAATCCCAGCAGCAGCAGAGAGATTGGAGATGGAGAAGTCGGTGCTGAACATGTATGGCCATGATTGGATGATGACGACGAAGAAGACGATGGATGTGGGCCCACCCGCATCACTTGCATGTTGTACCAGATCAGCTGCTGCTGCTGCTGCTGCTACTCCTAGACCCCTTAAAACACTCCAACTCTTCCCCATCAAGTCCCCTAATCTCAGAGCTGAAGATCATGAAGAAGAAGAATCTACATCTACACCATCCAACCCGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

248

Amino Acids

28.21

Weight (kDa)

8.44

Isoelectric Point (pI)

74.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	13 - 72	1.9e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28610
fragaria_vesca	FvH4_3g34410
malus_domestica	MD03G1106400.v1.1 MD11G1118500.v1.1
prunus_persica	Prupe.6G088900_v2.0.a1 Prupe.6G088900_v2.0.a1
pyrus_communis	pycom03g08570 pycom11g09980
rosa_chinensis	RchiOBHm_Chr5g0062001
rosa_laevigata	RLG00000035525
rosa_multiflora	Rmu_sc0002296.1_g000004
rosa_roxburghii	Rroxscaffold_1G00018700
rosa_rugosa	Rorug05G0345400
rosa_samantha	Rh5AG406700 Rh5BG420100 Rh5CG444200 Rh5DG435500
rosa_wichuraiana	Rw5G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	45
AccII	CGCG	1 cut(s)	469
AciI	CCGC	1 cut(s)	588
AclWI	GGATC	1 cut(s)	64
AcoI	YGGCCR	1 cut(s)	538
AcuI	CTGAAG	1 cut(s)	717
AfaI	GTAC	2 cut(s)	86, 607
AfiI	CCNNNNNNNGG	2 cut(s)	42, 437
AflIII	ACRYGT	1 cut(s)	531
AgsI	TTSAA	5 cut(s)	77, 248, 254, 260, 446
AluBI	AGCT	8 cut(s)	14, 142, 220, 232, 316, 419, 617, 695
AluI	AGCT	8 cut(s)	14, 142, 220, 232, 316, 419, 617, 695
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	64
AlwNI	CAGNNNCTG	1 cut(s)	620
AoxI	GGCC	3 cut(s)	538, 580, 741
ApaI	GGGCCC	1 cut(s)	584
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	471
AspS9I	GGNCC	3 cut(s)	475, 580, 581
AsuC2I	CCSGG	1 cut(s)	740
AvaII	GGWCC	1 cut(s)	475
AxyI	CCTNAGG	1 cut(s)	432
BaeGI	GKGCMC	2 cut(s)	50, 584
BalI	TGGCCA	1 cut(s)	540
BanI	GGYRCC	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	584
BbsI	GAAGAC	1 cut(s)	572
BccI	CCATC	5 cut(s)	36, 505, 565, 680, 739
BclI	TGATCA	1 cut(s)	352
BcnI	CCSGG	1 cut(s)	740
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	3 cut(s)	341, 642, 745
BfmI	CTRYAG	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	740
Bme18I	GGWCC	1 cut(s)	475
BmgT120I	GGNCC	3 cut(s)	475, 580, 581
BmiI	GGNNCC	3 cut(s)	47, 188, 582
BmrFI	CCNGG	1 cut(s)	740
BmsI	GCATC	1 cut(s)	599
BpiI	GAAGAC	1 cut(s)	572
BpmI	CTGGAG	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	22
BpuMI	CCSGG	1 cut(s)	740
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 437
Bse1I	ACTGG	1 cut(s)	188
Bse21I	CCTNAGG	1 cut(s)	432
BseGI	GGATG	4 cut(s)	32, 555, 580, 731
BseLI	CCNNNNNNNGG	2 cut(s)	42, 437
BseMII	CTCAG	2 cut(s)	446, 703
BseNI	ACTGG	1 cut(s)	188
BseSI	GKGCMC	2 cut(s)	50, 584
BseYI	CCCAGC	2 cut(s)	138, 487
Bsh1236I	CGCG	1 cut(s)	469
BshFI	GGCC	3 cut(s)	540, 582, 743
BshNI	GGYRCC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	740
BslFI	GGGAC	3 cut(s)	221, 343, 664
BslI	CCNNNNNNNGG	2 cut(s)	42, 437
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	221, 343, 664
BsnI	GGCC	3 cut(s)	540, 582, 743
Bsp120I	GGGCCC	1 cut(s)	580
Bsp1286I	GDGCHC	2 cut(s)	50, 584
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	4 cut(s)	69, 352, 611, 700
BspACI	CCGC	1 cut(s)	588
BspANI	GGCC	3 cut(s)	540, 582, 743
BspCNI	CTCAG	2 cut(s)	445, 702
BspFNI	CGCG	1 cut(s)	469
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	3 cut(s)	47, 188, 582
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	45
BsrGI	TGTACA	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	188
BssMI	GATC	4 cut(s)	69, 352, 611, 700
Bst6I	CTCTTC	2 cut(s)	72, 671
BstAPI	GCANNNNNTGC	2 cut(s)	319, 596
BstAUI	TGTACA	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	239, 421
BstDEI	CTNAG	3 cut(s)	221, 432, 689
BstEII	GGTNACC	1 cut(s)	344
BstF5I	GGATG	4 cut(s)	32, 555, 580, 731
BstFNI	CGCG	1 cut(s)	469
BstHHI	GCGC	1 cut(s)	471
BstKTI	GATC	4 cut(s)	72, 355, 614, 703
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	69, 352, 611, 700
BstMWI	GCNNNNNNNGC	9 cut(s)	20, 238, 319, 328, 596, 623, 626, 629, 632
BstNSI	RCATGY	2 cut(s)	535, 603
BstPI	GGTNACC	1 cut(s)	344
BstSCI	CCNGG	1 cut(s)	738
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	2 cut(s)	50, 584
BstUI	CGCG	1 cut(s)	469
BstV2I	GAAGAC	1 cut(s)	572
Bsu36I	CCTNAGG	1 cut(s)	432
BsuRI	GGCC	3 cut(s)	540, 582, 743
BtsCI	GGATG	4 cut(s)	32, 555, 580, 731
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
Cac8I	GCNNGC	2 cut(s)	239, 421
CaiI	CAGNNNCTG	1 cut(s)	620
CciI	TCATGA	1 cut(s)	703
CfoI	GCGC	1 cut(s)	471
Cfr13I	GGNCC	3 cut(s)	475, 580, 581
Csp6I	GTAC	2 cut(s)	85, 606
CviAII	CATG	5 cut(s)	479, 532, 542, 600, 704
CviQI	GTAC	2 cut(s)	85, 606
DdeI	CTNAG	3 cut(s)	221, 432, 689
DpnI	GATC	4 cut(s)	71, 354, 613, 702
DpnII	GATC	4 cut(s)	69, 352, 611, 700
EaeI	YGGCCR	1 cut(s)	538
Eam1104I	CTCTTC	2 cut(s)	72, 671
EarI	CTCTTC	2 cut(s)	72, 671
Eco24I	GRGCYC	1 cut(s)	584
Eco47I	GGWCC	1 cut(s)	475
Eco57I	CTGAAG	1 cut(s)	717
Eco81I	CCTNAGG	1 cut(s)	432
Eco91I	GGTNACC	1 cut(s)	344
EcoO65I	GGTNACC	1 cut(s)	344
EcoT38I	GRGCYC	1 cut(s)	584
FaeI	CATG	5 cut(s)	482, 535, 545, 603, 707
FaiI	YATR	9 cut(s)	153, 279, 408, 480, 533, 537, 543, 601, 705
FaqI	GGGAC	3 cut(s)	221, 343, 664
FatI	CATG	5 cut(s)	478, 531, 541, 599, 703
FauI	CCCGC	1 cut(s)	595
FbaI	TGATCA	1 cut(s)	352
FokI	GGATG	4 cut(s)	19, 562, 587, 718
FriOI	GRGCYC	1 cut(s)	584
FspBI	CTAG	3 cut(s)	341, 642, 745
GlaI	GCGC	1 cut(s)	470
GsaI	CCCAGC	2 cut(s)	142, 491
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	540, 582, 743
HapII	CCGG	1 cut(s)	740
HhaI	GCGC	1 cut(s)	471
Hin1II	CATG	5 cut(s)	482, 535, 545, 603, 707
Hin6I	GCGC	1 cut(s)	469
HinP1I	GCGC	1 cut(s)	469
HincII	GTYRAC	1 cut(s)	296
HindII	GTYRAC	1 cut(s)	296
HindIII	AAGCTT	2 cut(s)	218, 230
HinfI	GANTC	2 cut(s)	96, 716
HpaII	CCGG	1 cut(s)	740
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	2 cut(s)	101, 692
Hpy188III	TCNNGA	2 cut(s)	39, 704
Hpy8I	GTNNAC	1 cut(s)	296
Hpy99I	CGWCG	1 cut(s)	562
HpyAV	CCTTC	2 cut(s)	347, 372
HpyCH4V	TGCA	3 cut(s)	11, 237, 599
HpyF10VI	GCNNNNNNNGC	9 cut(s)	20, 238, 319, 328, 596, 623, 626, 629, 632
HpyF3I	CTNAG	3 cut(s)	221, 432, 689
Hsp92II	CATG	5 cut(s)	482, 535, 545, 603, 707
HspAI	GCGC	1 cut(s)	469
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	4 cut(s)	69, 352, 611, 700
LweI	GCATC	1 cut(s)	599
MaeI	CTAG	3 cut(s)	341, 642, 745
MaeIII	GTNAC	1 cut(s)	344
MalI	GATC	4 cut(s)	71, 354, 613, 702
MboI	GATC	4 cut(s)	69, 352, 611, 700
MhlI	GDGCHC	2 cut(s)	50, 584
MlsI	TGGCCA	1 cut(s)	540
MluCI	AATT	2 cut(s)	16, 280
MluNI	TGGCCA	1 cut(s)	540
MlyI	GAGTC	1 cut(s)	105
MmeI	TCCRAC	2 cut(s)	148, 685
MnlI	CCTC	4 cut(s)	46, 157, 219, 441
Mox20I	TGGCCA	1 cut(s)	540
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	540
MseI	TTAA	1 cut(s)	651
MslI	CAYNNNNRTG	1 cut(s)	598
Msp20I	TGGCCA	1 cut(s)	540
MspA1I	CMGCKG	2 cut(s)	419, 617
MspI	CCGG	1 cut(s)	740
MspR9I	CCNGG	1 cut(s)	740
MvnI	CGCG	1 cut(s)	469
MwoI	GCNNNNNNNGC	9 cut(s)	20, 238, 319, 328, 596, 623, 626, 629, 632
NciI	CCSGG	1 cut(s)	740
NdeII	GATC	4 cut(s)	69, 352, 611, 700
NlaIII	CATG	5 cut(s)	482, 535, 545, 603, 707
NlaIV	GGNNCC	3 cut(s)	47, 188, 582
NspI	RCATGY	2 cut(s)	535, 603
PagI	TCATGA	1 cut(s)	703
PciI	ACATGT	1 cut(s)	531
PcsI	WCGNNNNNNNCGW	1 cut(s)	566
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	716
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PscI	ACATGT	1 cut(s)	531
PspEI	GGTNACC	1 cut(s)	344
PspFI	CCCAGC	2 cut(s)	138, 487
PspN4I	GGNNCC	3 cut(s)	47, 188, 582
PspOMI	GGGCCC	1 cut(s)	580
PspPI	GGNCC	3 cut(s)	475, 580, 581
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	620
PvuII	CAGCTG	2 cut(s)	419, 617
RsaI	GTAC	2 cut(s)	86, 607
RsaNI	GTAC	2 cut(s)	85, 606
RseI	CAYNNNNRTG	1 cut(s)	598
SaqAI	TTAA	1 cut(s)	651
Sau3AI	GATC	4 cut(s)	69, 352, 611, 700
Sau96I	GGNCC	3 cut(s)	475, 580, 581
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	740
SduI	GDGCHC	2 cut(s)	50, 584
SfaNI	GCATC	1 cut(s)	599
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	475
SmiMI	CAYNNNNRTG	1 cut(s)	598
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	2 cut(s)	16, 280
SsiI	CCGC	1 cut(s)	588
SspMI	CTAG	3 cut(s)	341, 642, 745
StyD4I	CCNGG	1 cut(s)	738
TasI	AATT	2 cut(s)	16, 280
TatI	WGTACW	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	716
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	1 cut(s)	139
TspDTI	ATGAA	6 cut(s)	21, 371, 465, 473, 495, 720
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	475
XceI	RCATGY	2 cut(s)	535, 603
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	3 cut(s)	341, 642, 745

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.