Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0013121

Physical Location & Seq

Genomic Coordinates Forward (+)

68000267 .. 68002040

Gene Structure 1774 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG420100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGTCTCCTGCAGCAAATTTTTCTGCTTCTTCATCCTCAAGATGGTGCCCAACCCCAGAGCAACTGATGATCCTTGAAGAGATGTACAGGGCTGGAGTCAGAACTCCAAATGCTTCCCAAATTCAACAAATCACTGCCCAGCTCTCTTTCTATGGAAAGATTGAGGGCAAGAATGTGTTCTACTGGTTCCAAAACCACAAGGCAAGGGACAGACAAAAGCTTAGGAGGAAGCTTTGCAAGCAACTTCAACTTCAACAGCAACAACTCTATCATAATTATTACCATTGTCAACATCATCATCAACAGCAGCTAATGCTCAACCAGCAGAGCCTTCTAGGTTACCTTGATCAGTCCCCTTCTGCTTCTTCTGTTCTTCATCAGCCGCTTTGTTGTCATCATCATAACTTATCAGCTGGCTTTCTTCCTCAGGTGGGAGTTGAAGATGCAATGATGAACTACACGCGCAAGGTCCATGAAATCCCAGCAGCAGCAGAGAGATTGGAGATGGAGAAGTCGGTGCTGAACATGTATGGCCATGATTGGATGATGACGACGAAGAAGACGATGGATGTGGGCCCACCCGCATCACCTGCATGTTGTACCAGATCAGCTGCTGCTACTCCTAGACCCCTTAAAACACTCCAACTCTTCCCCATCAAGTCCCCTAATCTCAGAGCTGAAGATCATGAAGAAGAAGAATCTACATCTACACCATCCAACCCGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

242

Amino Acids

27.63

Weight (kDa)

8.65

Isoelectric Point (pI)

76.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	13 - 72	1.8e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28610
fragaria_vesca	FvH4_3g34410
malus_domestica	MD03G1106400.v1.1 MD11G1118500.v1.1
prunus_persica	Prupe.6G088900_v2.0.a1 Prupe.6G088900_v2.0.a1
pyrus_communis	pycom03g08570 pycom11g09980
rosa_chinensis	RchiOBHm_Chr5g0062001
rosa_laevigata	RLG00000035525
rosa_multiflora	Rmu_sc0002296.1_g000004
rosa_roxburghii	Rroxscaffold_1G00018700
rosa_rugosa	Rorug05G0345400
rosa_samantha	Rh5AG406700 Rh5BG420100 Rh5CG444200 Rh5DG435500
rosa_wichuraiana	Rw5G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	598
Acc36I	ACCTGC	1 cut(s)	598
AccB1I	GGYRCC	1 cut(s)	45
AccII	CGCG	1 cut(s)	463
AciI	CCGC	2 cut(s)	383, 582
AclWI	GGATC	1 cut(s)	64
AcoI	YGGCCR	1 cut(s)	532
AcsI	RAATTY	2 cut(s)	16, 120
AcuI	CTGAAG	1 cut(s)	699
AfaI	GTAC	2 cut(s)	86, 601
AfiI	CCNNNNNNNGG	2 cut(s)	42, 431
AflIII	ACRYGT	1 cut(s)	525
AgsI	TTSAA	5 cut(s)	77, 125, 248, 254, 440
AluBI	AGCT	7 cut(s)	142, 220, 232, 310, 413, 611, 677
AluI	AGCT	7 cut(s)	142, 220, 232, 310, 413, 611, 677
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	64
AlwNI	CAGNNNCTG	1 cut(s)	614
AoxI	GGCC	3 cut(s)	532, 574, 723
ApaI	GGGCCC	1 cut(s)	578
ApeKI	GCWGC	6 cut(s)	11, 307, 485, 488, 611, 614
ApoI	RAATTY	2 cut(s)	16, 120
Asp700I	GAANNNNTTC	1 cut(s)	176
AspLEI	GCGC	1 cut(s)	465
AspS9I	GGNCC	3 cut(s)	469, 574, 575
AsuC2I	CCSGG	1 cut(s)	722
AsuHPI	GGTGA	1 cut(s)	579
AvaII	GGWCC	1 cut(s)	469
AxyI	CCTNAGG	1 cut(s)	426
BaeGI	GKGCMC	2 cut(s)	50, 578
BalI	TGGCCA	1 cut(s)	534
BanI	GGYRCC	1 cut(s)	45
BanII	GRGCYC	1 cut(s)	578
BbsI	GAAGAC	1 cut(s)	566
BbvI	GCAGC	6 cut(s)	23, 319, 497, 500, 598, 601
BccI	CCATC	5 cut(s)	36, 499, 559, 662, 721
BclI	TGATCA	1 cut(s)	346
BcnI	CCSGG	1 cut(s)	722
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	3 cut(s)	335, 624, 727
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	598
BisI	GCNGC	7 cut(s)	12, 308, 383, 486, 489, 612, 615
BlsI	GCNGC	7 cut(s)	13, 309, 384, 487, 490, 613, 616
Bme1390I	CCNGG	1 cut(s)	722
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	3 cut(s)	469, 574, 575
BmiI	GGNNCC	3 cut(s)	47, 188, 576
BmrFI	CCNGG	1 cut(s)	722
BmsI	GCATC	2 cut(s)	433, 593
BpiI	GAAGAC	1 cut(s)	566
BpmI	CTGGAG	1 cut(s)	114
Bpu10I	CCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	22
BpuMI	CCSGG	1 cut(s)	722
Bsc4I	CCNNNNNNNGG	2 cut(s)	42, 431
Bse1I	ACTGG	1 cut(s)	188
Bse21I	CCTNAGG	1 cut(s)	426
Bse3DI	GCAATG	1 cut(s)	453
BseGI	GGATG	4 cut(s)	32, 549, 574, 713
BseLI	CCNNNNNNNGG	2 cut(s)	42, 431
BseMI	GCAATG	1 cut(s)	453
BseMII	CTCAG	2 cut(s)	440, 685
BseNI	ACTGG	1 cut(s)	188
BseSI	GKGCMC	2 cut(s)	50, 578
BseXI	GCAGC	6 cut(s)	23, 319, 497, 500, 598, 601
BseYI	CCCAGC	2 cut(s)	138, 481
Bsh1236I	CGCG	1 cut(s)	463
BshFI	GGCC	3 cut(s)	534, 576, 725
BshNI	GGYRCC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	722
BslFI	GGGAC	3 cut(s)	221, 337, 646
BslI	CCNNNNNNNGG	2 cut(s)	42, 431
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	221, 337, 646
BsnI	GGCC	3 cut(s)	534, 576, 725
Bsp120I	GGGCCC	1 cut(s)	574
Bsp1286I	GDGCHC	2 cut(s)	50, 578
Bsp1407I	TGTACA	1 cut(s)	84
Bsp143I	GATC	4 cut(s)	69, 346, 605, 682
BspACI	CCGC	2 cut(s)	383, 582
BspANI	GGCC	3 cut(s)	534, 576, 725
BspCNI	CTCAG	2 cut(s)	439, 684
BspFNI	CGCG	1 cut(s)	463
BspHI	TCATGA	1 cut(s)	685
BspLI	GGNNCC	3 cut(s)	47, 188, 576
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	598
BspPI	GGATC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	45
BsrDI	GCAATG	1 cut(s)	453
BsrGI	TGTACA	1 cut(s)	84
BsrI	ACTGG	1 cut(s)	188
BssMI	GATC	4 cut(s)	69, 346, 605, 682
Bst6I	CTCTTC	2 cut(s)	72, 653
BstAPI	GCANNNNNTGC	2 cut(s)	313, 590
BstAUI	TGTACA	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	239, 415
BstDEI	CTNAG	3 cut(s)	221, 426, 671
BstEII	GGTNACC	1 cut(s)	338
BstF5I	GGATG	4 cut(s)	32, 549, 574, 713
BstFNI	CGCG	1 cut(s)	463
BstHHI	GCGC	1 cut(s)	465
BstKTI	GATC	4 cut(s)	72, 349, 608, 685
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	69, 346, 605, 682
BstMWI	GCNNNNNNNGC	4 cut(s)	238, 313, 322, 590
BstNSI	RCATGY	2 cut(s)	529, 597
BstPI	GGTNACC	1 cut(s)	338
BstSCI	CCNGG	1 cut(s)	720
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	2 cut(s)	50, 578
BstUI	CGCG	1 cut(s)	463
BstV1I	GCAGC	6 cut(s)	23, 319, 497, 500, 598, 601
BstV2I	GAAGAC	1 cut(s)	566
Bsu36I	CCTNAGG	1 cut(s)	426
BsuRI	GGCC	3 cut(s)	534, 576, 725
BtsCI	GGATG	4 cut(s)	32, 549, 574, 713
BtsI	GCAGTG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	132
BveI	ACCTGC	1 cut(s)	598
Cac8I	GCNNGC	2 cut(s)	239, 415
CaiI	CAGNNNCTG	1 cut(s)	614
CciI	TCATGA	1 cut(s)	685
CfoI	GCGC	1 cut(s)	465
Cfr13I	GGNCC	3 cut(s)	469, 574, 575
Csp6I	GTAC	2 cut(s)	85, 600
CviAII	CATG	5 cut(s)	473, 526, 536, 594, 686
CviQI	GTAC	2 cut(s)	85, 600
DdeI	CTNAG	3 cut(s)	221, 426, 671
DpnI	GATC	4 cut(s)	71, 348, 607, 684
DpnII	GATC	4 cut(s)	69, 346, 605, 682
EaeI	YGGCCR	1 cut(s)	532
Eam1104I	CTCTTC	2 cut(s)	72, 653
EarI	CTCTTC	2 cut(s)	72, 653
Eco24I	GRGCYC	1 cut(s)	578
Eco47I	GGWCC	1 cut(s)	469
Eco57I	CTGAAG	1 cut(s)	699
Eco81I	CCTNAGG	1 cut(s)	426
Eco91I	GGTNACC	1 cut(s)	338
EcoO65I	GGTNACC	1 cut(s)	338
EcoT38I	GRGCYC	1 cut(s)	578
FaeI	CATG	5 cut(s)	476, 529, 539, 597, 689
FaiI	YATR	9 cut(s)	153, 273, 402, 474, 527, 531, 537, 595, 687
FaqI	GGGAC	3 cut(s)	221, 337, 646
FatI	CATG	5 cut(s)	472, 525, 535, 593, 685
FauI	CCCGC	1 cut(s)	589
FbaI	TGATCA	1 cut(s)	346
Fnu4HI	GCNGC	7 cut(s)	12, 308, 383, 486, 489, 612, 615
FokI	GGATG	4 cut(s)	19, 556, 581, 700
FriOI	GRGCYC	1 cut(s)	578
Fsp4HI	GCNGC	7 cut(s)	12, 308, 383, 486, 489, 612, 615
FspBI	CTAG	3 cut(s)	335, 624, 727
GlaI	GCGC	1 cut(s)	464
GluI	GCNGC	7 cut(s)	12, 308, 383, 486, 489, 612, 615
GsaI	CCCAGC	2 cut(s)	142, 485
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	3 cut(s)	534, 576, 725
HapII	CCGG	1 cut(s)	722
HhaI	GCGC	1 cut(s)	465
Hin1II	CATG	5 cut(s)	476, 529, 539, 597, 689
Hin6I	GCGC	1 cut(s)	463
HinP1I	GCGC	1 cut(s)	463
HincII	GTYRAC	1 cut(s)	290
HindII	GTYRAC	1 cut(s)	290
HindIII	AAGCTT	2 cut(s)	218, 230
HinfI	GANTC	2 cut(s)	96, 698
HpaII	CCGG	1 cut(s)	722
HphI	GGTGA	1 cut(s)	579
Hpy166II	GTNNAC	1 cut(s)	290
Hpy188I	TCNGA	2 cut(s)	101, 674
Hpy188III	TCNNGA	2 cut(s)	39, 686
Hpy8I	GTNNAC	1 cut(s)	290
Hpy99I	CGWCG	1 cut(s)	556
HpyAV	CCTTC	2 cut(s)	341, 366
HpyCH4V	TGCA	4 cut(s)	11, 237, 446, 593
HpyF10VI	GCNNNNNNNGC	4 cut(s)	238, 313, 322, 590
HpyF3I	CTNAG	3 cut(s)	221, 426, 671
Hsp92II	CATG	5 cut(s)	476, 529, 539, 597, 689
HspAI	GCGC	1 cut(s)	463
Ksp22I	TGATCA	1 cut(s)	346
Kzo9I	GATC	4 cut(s)	69, 346, 605, 682
Lsp1109I	GCAGC	6 cut(s)	23, 319, 497, 500, 598, 601
LweI	GCATC	2 cut(s)	433, 593
MaeI	CTAG	3 cut(s)	335, 624, 727
MaeIII	GTNAC	1 cut(s)	338
MalI	GATC	4 cut(s)	71, 348, 607, 684
MboI	GATC	4 cut(s)	69, 346, 605, 682
MhlI	GDGCHC	2 cut(s)	50, 578
MlsI	TGGCCA	1 cut(s)	534
MluCI	AATT	3 cut(s)	16, 120, 274
MluNI	TGGCCA	1 cut(s)	534
MlyI	GAGTC	1 cut(s)	105
MmeI	TCCRAC	1 cut(s)	667
MnlI	CCTC	4 cut(s)	46, 157, 219, 435
Mox20I	TGGCCA	1 cut(s)	534
MroXI	GAANNNNTTC	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	534
MseI	TTAA	1 cut(s)	633
MslI	CAYNNNNRTG	1 cut(s)	592
Msp20I	TGGCCA	1 cut(s)	534
MspA1I	CMGCKG	2 cut(s)	413, 611
MspI	CCGG	1 cut(s)	722
MspR9I	CCNGG	1 cut(s)	722
MvnI	CGCG	1 cut(s)	463
MwoI	GCNNNNNNNGC	4 cut(s)	238, 313, 322, 590
NciI	CCSGG	1 cut(s)	722
NdeII	GATC	4 cut(s)	69, 346, 605, 682
NlaIII	CATG	5 cut(s)	476, 529, 539, 597, 689
NlaIV	GGNNCC	3 cut(s)	47, 188, 576
NspI	RCATGY	2 cut(s)	529, 597
PagI	TCATGA	1 cut(s)	685
PaqCI	CACCTGC	1 cut(s)	598
PciI	ACATGT	1 cut(s)	525
PcsI	WCGNNNNNNNCGW	1 cut(s)	560
PdmI	GAANNNNTTC	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	698
PkrI	GCNGC	7 cut(s)	13, 309, 384, 487, 490, 613, 616
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
PscI	ACATGT	1 cut(s)	525
PspEI	GGTNACC	1 cut(s)	338
PspFI	CCCAGC	2 cut(s)	138, 481
PspN4I	GGNNCC	3 cut(s)	47, 188, 576
PspOMI	GGGCCC	1 cut(s)	574
PspPI	GGNCC	3 cut(s)	469, 574, 575
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	614
PvuII	CAGCTG	2 cut(s)	413, 611
RsaI	GTAC	2 cut(s)	86, 601
RsaNI	GTAC	2 cut(s)	85, 600
RseI	CAYNNNNRTG	1 cut(s)	592
SaqAI	TTAA	1 cut(s)	633
SatI	GCNGC	7 cut(s)	12, 308, 383, 486, 489, 612, 615
Sau3AI	GATC	4 cut(s)	69, 346, 605, 682
Sau96I	GGNCC	3 cut(s)	469, 574, 575
SchI	GAGTC	1 cut(s)	105
ScrFI	CCNGG	1 cut(s)	722
SduI	GDGCHC	2 cut(s)	50, 578
SfaNI	GCATC	2 cut(s)	433, 593
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	592
SmlI	CTYRAG	1 cut(s)	37
SmoI	CTYRAG	1 cut(s)	37
Sse9I	AATT	3 cut(s)	16, 120, 274
SsiI	CCGC	2 cut(s)	383, 582
SspMI	CTAG	3 cut(s)	335, 624, 727
StyD4I	CCNGG	1 cut(s)	720
TasI	AATT	3 cut(s)	16, 120, 274
TatI	WGTACW	1 cut(s)	84
TauI	GCSGC	1 cut(s)	385
TfiI	GAWTC	1 cut(s)	698
Tru1I	TTAA	1 cut(s)	633
Tru9I	TTAA	1 cut(s)	633
TscAI	CASTG	1 cut(s)	139
TseI	GCWGC	6 cut(s)	11, 307, 485, 488, 611, 614
TspDTI	ATGAA	5 cut(s)	21, 365, 467, 489, 702
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	469
XapI	RAATTY	2 cut(s)	16, 120
XceI	RCATGY	2 cut(s)	529, 597
XmnI	GAANNNNTTC	1 cut(s)	176
XspI	CTAG	3 cut(s)	335, 624, 727

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.