Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013121

Physical Location & Seq

Genomic Coordinates Forward (+)

68018247 .. 68019535

Gene Structure 1289 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035525

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGTCTCCTGCAGCTAATTTTTCTGCTTCTTTTTCTTCTTCTTCATCCTCAAGATGGTGCCCAACCCCAGAGCAACTGATGATCCTTGAAGAGATGTACAGGGCTGGAGTCAGAACTCCAAATGCTTCCCAAATCCAACAGATCACTGCCCAGCTCTCTTTCTATGGAAAGATTGAGGGCAAGAATGTGTTCTACTGGTTCCAAAACCACAAGGCAAGGGACAGACAAAAGCTTAGGAGGAAGCTTTGCAAGCAACTTCAACTTCAACAGCAACAACTCTATCATAATTATTACCATTGTCAACAGCATCATCAACAGCAGCTAATGCTCAACCAGCAGAGCCTTCTAGGTTACCTTGATCAGTCCCCTGCTACTTCTTCTGTTCTTCATCAGCCGCTTTGTTGTCATCATCATAACTTATCAGCTGGCTTTCTTCCTCAGGTGGGAGTTGAAGATGTATTGATGAACTACACGCGCAAGGTCCATGAAATCCCAGCAGCAGCAGCAGCAGCAGAGAGATTGGAGATGGAGAAGTCGGTGCTGAACATGTATGGCCATGATTGGATGATGACGACAACGAAGACGACGATGGATGTGGGCCCACTCTCATCCCCTGCATGTTGTACCAGATCAGCTGCTGCTACTACTCCTAGACCCCTTAAAACACTCCAACTCTTCCCCATCAAGTCCCCTAATCTCAAAGCTGAAGATCATGAAGAAGAAGAATCTACATCTACACCATCGATCCAACCCGGCCTAGAAACTATAATTAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

259

Amino Acids

29.26

Weight (kDa)

8.43

Isoelectric Point (pI)

72.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	17 - 76	2e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28610
fragaria_vesca	FvH4_3g34410
malus_domestica	MD03G1106400.v1.1 MD11G1118500.v1.1
prunus_persica	Prupe.6G088900_v2.0.a1 Prupe.6G088900_v2.0.a1
pyrus_communis	pycom03g08570 pycom11g09980
rosa_chinensis	RchiOBHm_Chr5g0062001
rosa_laevigata	RLG00000035525
rosa_multiflora	Rmu_sc0002296.1_g000004
rosa_roxburghii	Rroxscaffold_1G00018700
rosa_rugosa	Rorug05G0345400
rosa_samantha	Rh5AG406700 Rh5BG420100 Rh5CG444200 Rh5DG435500
rosa_wichuraiana	Rw5G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	57
AccII	CGCG	1 cut(s)	475
AciI	CCGC	1 cut(s)	395
AclWI	GGATC	2 cut(s)	76, 739
AcoI	YGGCCR	1 cut(s)	553
AcuI	CTGAAG	1 cut(s)	726
AfaI	GTAC	2 cut(s)	98, 625
AfiI	CCNNNNNNNGG	2 cut(s)	54, 443
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	4 cut(s)	89, 260, 266, 452
AluBI	AGCT	8 cut(s)	14, 154, 232, 244, 322, 425, 635, 704
AluI	AGCT	8 cut(s)	14, 154, 232, 244, 322, 425, 635, 704
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	2 cut(s)	76, 739
AlwNI	CAGNNNCTG	1 cut(s)	638
AoxI	GGCC	3 cut(s)	553, 598, 754
ApaI	GGGCCC	1 cut(s)	602
ApeKI	GCWGC	9 cut(s)	11, 319, 497, 500, 503, 506, 509, 635, 638
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	477
AspS9I	GGNCC	3 cut(s)	481, 598, 599
AsuC2I	CCSGG	1 cut(s)	753
AvaII	GGWCC	1 cut(s)	481
AxyI	CCTNAGG	1 cut(s)	438
BaeGI	GKGCMC	2 cut(s)	62, 602
BalI	TGGCCA	1 cut(s)	555
BanI	GGYRCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	602
BbsI	GAAGAC	1 cut(s)	587
BbvI	GCAGC	9 cut(s)	23, 331, 509, 512, 515, 518, 521, 622, 625
BccI	CCATC	5 cut(s)	48, 520, 583, 689, 748
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	753
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	3 cut(s)	347, 651, 758
BfmI	CTRYAG	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	753
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	3 cut(s)	481, 598, 599
BmiI	GGNNCC	3 cut(s)	59, 200, 600
BmrFI	CCNGG	1 cut(s)	753
BmsI	GCATC	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	587
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	753
Bsa29I	ATCGAT	1 cut(s)	743
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 443
Bse1I	ACTGG	1 cut(s)	200
Bse21I	CCTNAGG	1 cut(s)	438
BseCI	ATCGAT	1 cut(s)	743
BseGI	GGATG	4 cut(s)	44, 570, 598, 608
BseLI	CCNNNNNNNGG	2 cut(s)	54, 443
BseMII	CTCAG	1 cut(s)	452
BseNI	ACTGG	1 cut(s)	200
BseSI	GKGCMC	2 cut(s)	62, 602
BseXI	GCAGC	9 cut(s)	23, 331, 509, 512, 515, 518, 521, 622, 625
BseYI	CCCAGC	2 cut(s)	150, 493
Bsh1236I	CGCG	1 cut(s)	475
BshFI	GGCC	3 cut(s)	555, 600, 756
BshNI	GGYRCC	1 cut(s)	57
BshVI	ATCGAT	1 cut(s)	743
BsiSI	CCGG	1 cut(s)	753
BslFI	GGGAC	3 cut(s)	233, 349, 673
BslI	CCNNNNNNNGG	2 cut(s)	54, 443
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	233, 349, 673
BsnI	GGCC	3 cut(s)	555, 600, 756
Bsp120I	GGGCCC	1 cut(s)	598
Bsp1286I	GDGCHC	2 cut(s)	62, 602
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	6 cut(s)	81, 141, 358, 629, 709, 744
BspACI	CCGC	1 cut(s)	395
BspANI	GGCC	3 cut(s)	555, 600, 756
BspCNI	CTCAG	1 cut(s)	451
BspDI	ATCGAT	1 cut(s)	743
BspFNI	CGCG	1 cut(s)	475
BspHI	TCATGA	1 cut(s)	712
BspLI	GGNNCC	3 cut(s)	59, 200, 600
BspMAI	CTGCAG	1 cut(s)	13
BspPI	GGATC	2 cut(s)	76, 739
BspT107I	GGYRCC	1 cut(s)	57
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	6 cut(s)	81, 141, 358, 629, 709, 744
Bst6I	CTCTTC	2 cut(s)	84, 680
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	251, 427
BstDEI	CTNAG	2 cut(s)	233, 438
BstEII	GGTNACC	1 cut(s)	350
BstF5I	GGATG	4 cut(s)	44, 570, 598, 608
BstFNI	CGCG	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	6 cut(s)	84, 144, 361, 632, 712, 747
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	6 cut(s)	81, 141, 358, 629, 709, 744
BstMWI	GCNNNNNNNGC	6 cut(s)	250, 325, 334, 503, 506, 509
BstNSI	RCATGY	2 cut(s)	550, 621
BstPI	GGTNACC	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	751
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	2 cut(s)	62, 602
BstUI	CGCG	1 cut(s)	475
BstV1I	GCAGC	9 cut(s)	23, 331, 509, 512, 515, 518, 521, 622, 625
BstV2I	GAAGAC	1 cut(s)	587
Bsu15I	ATCGAT	1 cut(s)	743
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	555, 600, 756
BsuTUI	ATCGAT	1 cut(s)	743
BtsCI	GGATG	4 cut(s)	44, 570, 598, 608
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	2 cut(s)	251, 427
CaiI	CAGNNNCTG	1 cut(s)	638
CciI	TCATGA	1 cut(s)	712
CfoI	GCGC	1 cut(s)	477
Cfr13I	GGNCC	3 cut(s)	481, 598, 599
ClaI	ATCGAT	1 cut(s)	743
Csp6I	GTAC	2 cut(s)	97, 624
CviAII	CATG	5 cut(s)	485, 547, 557, 618, 713
CviQI	GTAC	2 cut(s)	97, 624
DdeI	CTNAG	2 cut(s)	233, 438
DpnI	GATC	6 cut(s)	83, 143, 360, 631, 711, 746
DpnII	GATC	6 cut(s)	81, 141, 358, 629, 709, 744
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	2 cut(s)	84, 680
EarI	CTCTTC	2 cut(s)	84, 680
Eco24I	GRGCYC	1 cut(s)	602
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	726
Eco81I	CCTNAGG	1 cut(s)	438
Eco91I	GGTNACC	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	350
EcoT38I	GRGCYC	1 cut(s)	602
FaeI	CATG	5 cut(s)	488, 550, 560, 621, 716
FaqI	GGGAC	3 cut(s)	233, 349, 673
FatI	CATG	5 cut(s)	484, 546, 556, 617, 712
FbaI	TGATCA	1 cut(s)	358
FokI	GGATG	4 cut(s)	31, 577, 595, 605
FriOI	GRGCYC	1 cut(s)	602
FspBI	CTAG	3 cut(s)	347, 651, 758
GlaI	GCGC	1 cut(s)	476
GsaI	CCCAGC	2 cut(s)	154, 497
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	555, 600, 756
HapII	CCGG	1 cut(s)	753
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	5 cut(s)	488, 550, 560, 621, 716
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HindIII	AAGCTT	2 cut(s)	230, 242
HinfI	GANTC	2 cut(s)	108, 725
HpaII	CCGG	1 cut(s)	753
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	1 cut(s)	113
Hpy188III	TCNNGA	2 cut(s)	51, 713
Hpy8I	GTNNAC	1 cut(s)	302
Hpy99I	CGWCG	1 cut(s)	589
HpyAV	CCTTC	1 cut(s)	353
HpyCH4V	TGCA	3 cut(s)	11, 249, 617
HpyF10VI	GCNNNNNNNGC	6 cut(s)	250, 325, 334, 503, 506, 509
HpyF3I	CTNAG	2 cut(s)	233, 438
Hsp92II	CATG	5 cut(s)	488, 550, 560, 621, 716
HspAI	GCGC	1 cut(s)	475
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	6 cut(s)	81, 141, 358, 629, 709, 744
Lsp1109I	GCAGC	9 cut(s)	23, 331, 509, 512, 515, 518, 521, 622, 625
LweI	GCATC	1 cut(s)	316
MaeI	CTAG	3 cut(s)	347, 651, 758
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	6 cut(s)	83, 143, 360, 631, 711, 746
MboI	GATC	6 cut(s)	81, 141, 358, 629, 709, 744
MhlI	GDGCHC	2 cut(s)	62, 602
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	3 cut(s)	16, 286, 768
MluNI	TGGCCA	1 cut(s)	555
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	3 cut(s)	160, 694, 772
MnlI	CCTC	4 cut(s)	58, 169, 231, 447
Mox20I	TGGCCA	1 cut(s)	555
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	2 cut(s)	660, 771
Msp20I	TGGCCA	1 cut(s)	555
MspA1I	CMGCKG	2 cut(s)	425, 635
MspI	CCGG	1 cut(s)	753
MspR9I	CCNGG	1 cut(s)	753
MvnI	CGCG	1 cut(s)	475
MwoI	GCNNNNNNNGC	6 cut(s)	250, 325, 334, 503, 506, 509
NciI	CCSGG	1 cut(s)	753
NdeII	GATC	6 cut(s)	81, 141, 358, 629, 709, 744
NlaIII	CATG	5 cut(s)	488, 550, 560, 621, 716
NlaIV	GGNNCC	3 cut(s)	59, 200, 600
NspI	RCATGY	2 cut(s)	550, 621
PagI	TCATGA	1 cut(s)	712
PciI	ACATGT	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	1 cut(s)	584
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	725
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PscI	ACATGT	1 cut(s)	546
PspEI	GGTNACC	1 cut(s)	350
PspFI	CCCAGC	2 cut(s)	150, 493
PspN4I	GGNNCC	3 cut(s)	59, 200, 600
PspOMI	GGGCCC	1 cut(s)	598
PspPI	GGNCC	3 cut(s)	481, 598, 599
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	638
PvuII	CAGCTG	2 cut(s)	425, 635
RsaI	GTAC	2 cut(s)	98, 625
RsaNI	GTAC	2 cut(s)	97, 624
SaqAI	TTAA	2 cut(s)	660, 771
Sau3AI	GATC	6 cut(s)	81, 141, 358, 629, 709, 744
Sau96I	GGNCC	3 cut(s)	481, 598, 599
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	753
SduI	GDGCHC	2 cut(s)	62, 602
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	3 cut(s)	16, 286, 768
SsiI	CCGC	1 cut(s)	395
SspMI	CTAG	3 cut(s)	347, 651, 758
StyD4I	CCNGG	1 cut(s)	751
TaqI	TCGA	1 cut(s)	743
TasI	AATT	3 cut(s)	16, 286, 768
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	1 cut(s)	725
Tru1I	TTAA	2 cut(s)	660, 771
Tru9I	TTAA	2 cut(s)	660, 771
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	9 cut(s)	11, 319, 497, 500, 503, 506, 509, 635, 638
TspDTI	ATGAA	5 cut(s)	33, 377, 479, 501, 729
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	481
XceI	RCATGY	2 cut(s)	550, 621
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	3 cut(s)	347, 651, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.