Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0013121

Physical Location & Seq

Genomic Coordinates Forward (+)

67588663 .. 67590534

Gene Structure 1872 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33833

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGTCTCCTGCAGCTAATTTTTCTGCTTCTTTTTCTTCTTCTTCATCCTCAAGATGGTGCCCAACCCCAGAGCAACTGATGATCCTTGAAGAGATGTACAGGGCTGGAGTCAGAACTCCAAATGCTTCCCAAATCCAACAAATCACTGCCCAGCTCTCTTTCTATGGAAAGATTGAGGGCAAGAATGTGTTCTACTGGTTCCAAAACCACAAGGCAAGGGACAGACAAAAGCTTAGGAGGAAGCTTTGCAAGCAACTTCAACTTCAACAGCAACAACTCTATCATAATTATTACCATTGTCAACATCATCATCAACAGCAGCTAATGCTCAACCAGCAGAGCCTTCTAGGTTACCTTGATCAGTCCCCTTCTGCTTCTTCTGTTCTTCATCAGCCGCTTTGTTGTCATCATCATAACTTATCAGCTGGCTTTCTTCCTCAGGTGGGAGTTGAAGATGCATTGATGAACTACACGCGCAAGGTCCATGAAATCCCAGCGGCAGCAGAGAGATTGGAGATGGAGAAGTCGGTGCTGAACATGTATGGCCATGATTGGATGATGACGACGAAGAAGACGATGGATGTGGGCCCACCCGCATCACCTGCATGTTGTACCAGATCAGCTGCTGCTGCTACTCCTAGACCCCTTAAAACACTCCAACTCTTCCCCATCAAGTCCCCTAATCTCAGATCTGAAGATCATGAAGAAGAAGAATCTACATCTACACCATCCAACCCGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

247

Amino Acids

28.11

Weight (kDa)

8.65

Isoelectric Point (pI)

79.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	17 - 76	1.8e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28610
fragaria_vesca	FvH4_3g34410
malus_domestica	MD03G1106400.v1.1 MD11G1118500.v1.1
prunus_persica	Prupe.6G088900_v2.0.a1 Prupe.6G088900_v2.0.a1
pyrus_communis	pycom03g08570 pycom11g09980
rosa_chinensis	RchiOBHm_Chr5g0062001
rosa_laevigata	RLG00000035525
rosa_multiflora	Rmu_sc0002296.1_g000004
rosa_roxburghii	Rroxscaffold_1G00018700
rosa_rugosa	Rorug05G0345400
rosa_samantha	Rh5AG406700 Rh5BG420100 Rh5CG444200 Rh5DG435500
rosa_wichuraiana	Rw5G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	610
Acc36I	ACCTGC	1 cut(s)	610
AccB1I	GGYRCC	1 cut(s)	57
AccII	CGCG	1 cut(s)	475
AciI	CCGC	3 cut(s)	395, 497, 594
AclWI	GGATC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	544
AcuI	CTGAAG	1 cut(s)	714
AfaI	GTAC	2 cut(s)	98, 613
AfiI	CCNNNNNNNGG	2 cut(s)	54, 443
AflIII	ACRYGT	1 cut(s)	537
AgsI	TTSAA	4 cut(s)	89, 260, 266, 452
AluBI	AGCT	7 cut(s)	14, 154, 232, 244, 322, 425, 623
AluI	AGCT	7 cut(s)	14, 154, 232, 244, 322, 425, 623
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	76
AlwNI	CAGNNNCTG	1 cut(s)	626
AoxI	GGCC	3 cut(s)	544, 586, 738
ApaI	GGGCCC	1 cut(s)	590
ApeKI	GCWGC	6 cut(s)	11, 319, 500, 623, 626, 629
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	477
AspS9I	GGNCC	3 cut(s)	481, 586, 587
AsuC2I	CCSGG	1 cut(s)	737
AsuHPI	GGTGA	1 cut(s)	591
AvaII	GGWCC	1 cut(s)	481
AxyI	CCTNAGG	1 cut(s)	438
BaeGI	GKGCMC	2 cut(s)	62, 590
BalI	TGGCCA	1 cut(s)	546
BanI	GGYRCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	590
BbsI	GAAGAC	1 cut(s)	578
BbvI	GCAGC	6 cut(s)	23, 331, 512, 610, 613, 616
BccI	CCATC	5 cut(s)	48, 511, 571, 677, 736
BclI	TGATCA	1 cut(s)	358
BcnI	CCSGG	1 cut(s)	737
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	3 cut(s)	347, 639, 742
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	610
BglII	AGATCT	1 cut(s)	689
BisI	GCNGC	8 cut(s)	12, 320, 395, 498, 501, 624, 627, 630
BlsI	GCNGC	8 cut(s)	13, 321, 396, 499, 502, 625, 628, 631
Bme1390I	CCNGG	1 cut(s)	737
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	3 cut(s)	481, 586, 587
BmiI	GGNNCC	3 cut(s)	59, 200, 588
BmrFI	CCNGG	1 cut(s)	737
BmsI	GCATC	2 cut(s)	445, 605
BpiI	GAAGAC	1 cut(s)	578
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	1 cut(s)	737
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 443
Bse1I	ACTGG	1 cut(s)	200
Bse21I	CCTNAGG	1 cut(s)	438
BseGI	GGATG	4 cut(s)	44, 561, 586, 728
BseLI	CCNNNNNNNGG	2 cut(s)	54, 443
BseMII	CTCAG	2 cut(s)	452, 700
BseNI	ACTGG	1 cut(s)	200
BseSI	GKGCMC	2 cut(s)	62, 590
BseXI	GCAGC	6 cut(s)	23, 331, 512, 610, 613, 616
BseYI	CCCAGC	2 cut(s)	150, 493
Bsh1236I	CGCG	1 cut(s)	475
BshFI	GGCC	3 cut(s)	546, 588, 740
BshNI	GGYRCC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	737
BslFI	GGGAC	3 cut(s)	233, 349, 661
BslI	CCNNNNNNNGG	2 cut(s)	54, 443
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	233, 349, 661
BsnI	GGCC	3 cut(s)	546, 588, 740
Bsp120I	GGGCCC	1 cut(s)	586
Bsp1286I	GDGCHC	2 cut(s)	62, 590
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	5 cut(s)	81, 358, 617, 689, 697
BspACI	CCGC	3 cut(s)	395, 497, 594
BspANI	GGCC	3 cut(s)	546, 588, 740
BspCNI	CTCAG	2 cut(s)	451, 699
BspFNI	CGCG	1 cut(s)	475
BspHI	TCATGA	1 cut(s)	700
BspLI	GGNNCC	3 cut(s)	59, 200, 588
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	610
BspPI	GGATC	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	57
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	5 cut(s)	81, 358, 617, 689, 697
Bst6I	CTCTTC	2 cut(s)	84, 668
BstAPI	GCANNNNNTGC	2 cut(s)	325, 602
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	251, 427
BstDEI	CTNAG	3 cut(s)	233, 438, 686
BstEII	GGTNACC	1 cut(s)	350
BstF5I	GGATG	4 cut(s)	44, 561, 586, 728
BstFNI	CGCG	1 cut(s)	475
BstHHI	GCGC	1 cut(s)	477
BstKTI	GATC	5 cut(s)	84, 361, 620, 692, 700
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	5 cut(s)	81, 358, 617, 689, 697
BstMWI	GCNNNNNNNGC	5 cut(s)	250, 325, 334, 602, 629
BstNSI	RCATGY	2 cut(s)	541, 609
BstPI	GGTNACC	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	735
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	2 cut(s)	62, 590
BstUI	CGCG	1 cut(s)	475
BstV1I	GCAGC	6 cut(s)	23, 331, 512, 610, 613, 616
BstV2I	GAAGAC	1 cut(s)	578
BstX2I	RGATCY	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	689
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	3 cut(s)	546, 588, 740
BtsCI	GGATG	4 cut(s)	44, 561, 586, 728
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	610
Cac8I	GCNNGC	2 cut(s)	251, 427
CaiI	CAGNNNCTG	1 cut(s)	626
CciI	TCATGA	1 cut(s)	700
CfoI	GCGC	1 cut(s)	477
Cfr13I	GGNCC	3 cut(s)	481, 586, 587
Csp6I	GTAC	2 cut(s)	97, 612
CviAII	CATG	5 cut(s)	485, 538, 548, 606, 701
CviQI	GTAC	2 cut(s)	97, 612
DdeI	CTNAG	3 cut(s)	233, 438, 686
DpnI	GATC	5 cut(s)	83, 360, 619, 691, 699
DpnII	GATC	5 cut(s)	81, 358, 617, 689, 697
EaeI	YGGCCR	1 cut(s)	544
Eam1104I	CTCTTC	2 cut(s)	84, 668
EarI	CTCTTC	2 cut(s)	84, 668
Eco24I	GRGCYC	1 cut(s)	590
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	714
Eco81I	CCTNAGG	1 cut(s)	438
Eco91I	GGTNACC	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	350
EcoT22I	ATGCAT	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	590
FaeI	CATG	5 cut(s)	488, 541, 551, 609, 704
FaiI	YATR	9 cut(s)	165, 285, 414, 486, 539, 543, 549, 607, 702
FaqI	GGGAC	3 cut(s)	233, 349, 661
FatI	CATG	5 cut(s)	484, 537, 547, 605, 700
FauI	CCCGC	1 cut(s)	601
FbaI	TGATCA	1 cut(s)	358
Fnu4HI	GCNGC	8 cut(s)	12, 320, 395, 498, 501, 624, 627, 630
FokI	GGATG	4 cut(s)	31, 568, 593, 715
FriOI	GRGCYC	1 cut(s)	590
Fsp4HI	GCNGC	8 cut(s)	12, 320, 395, 498, 501, 624, 627, 630
FspBI	CTAG	3 cut(s)	347, 639, 742
GlaI	GCGC	1 cut(s)	476
GluI	GCNGC	8 cut(s)	12, 320, 395, 498, 501, 624, 627, 630
GsaI	CCCAGC	2 cut(s)	154, 497
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	3 cut(s)	546, 588, 740
HapII	CCGG	1 cut(s)	737
HhaI	GCGC	1 cut(s)	477
Hin1II	CATG	5 cut(s)	488, 541, 551, 609, 704
Hin6I	GCGC	1 cut(s)	475
HinP1I	GCGC	1 cut(s)	475
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HindIII	AAGCTT	2 cut(s)	230, 242
HinfI	GANTC	2 cut(s)	108, 713
HpaII	CCGG	1 cut(s)	737
HphI	GGTGA	1 cut(s)	591
Hpy166II	GTNNAC	1 cut(s)	302
Hpy188I	TCNGA	3 cut(s)	113, 689, 694
Hpy188III	TCNNGA	2 cut(s)	51, 701
Hpy8I	GTNNAC	1 cut(s)	302
Hpy99I	CGWCG	1 cut(s)	568
HpyAV	CCTTC	2 cut(s)	353, 378
HpyCH4V	TGCA	4 cut(s)	11, 249, 458, 605
HpyF10VI	GCNNNNNNNGC	5 cut(s)	250, 325, 334, 602, 629
HpyF3I	CTNAG	3 cut(s)	233, 438, 686
Hsp92II	CATG	5 cut(s)	488, 541, 551, 609, 704
HspAI	GCGC	1 cut(s)	475
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	5 cut(s)	81, 358, 617, 689, 697
Lsp1109I	GCAGC	6 cut(s)	23, 331, 512, 610, 613, 616
LweI	GCATC	2 cut(s)	445, 605
MaeI	CTAG	3 cut(s)	347, 639, 742
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	5 cut(s)	83, 360, 619, 691, 699
MboI	GATC	5 cut(s)	81, 358, 617, 689, 697
MflI	RGATCY	1 cut(s)	689
MhlI	GDGCHC	2 cut(s)	62, 590
MlsI	TGGCCA	1 cut(s)	546
MluCI	AATT	2 cut(s)	16, 286
MluNI	TGGCCA	1 cut(s)	546
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	2 cut(s)	160, 682
MnlI	CCTC	4 cut(s)	58, 169, 231, 447
Mox20I	TGGCCA	1 cut(s)	546
Mph1103I	ATGCAT	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	546
MseI	TTAA	1 cut(s)	648
MslI	CAYNNNNRTG	1 cut(s)	604
Msp20I	TGGCCA	1 cut(s)	546
MspA1I	CMGCKG	3 cut(s)	425, 497, 623
MspI	CCGG	1 cut(s)	737
MspR9I	CCNGG	1 cut(s)	737
MvnI	CGCG	1 cut(s)	475
MwoI	GCNNNNNNNGC	5 cut(s)	250, 325, 334, 602, 629
NciI	CCSGG	1 cut(s)	737
NdeII	GATC	5 cut(s)	81, 358, 617, 689, 697
NlaIII	CATG	5 cut(s)	488, 541, 551, 609, 704
NlaIV	GGNNCC	3 cut(s)	59, 200, 588
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	2 cut(s)	541, 609
PagI	TCATGA	1 cut(s)	700
PaqCI	CACCTGC	1 cut(s)	610
PciI	ACATGT	1 cut(s)	537
PcsI	WCGNNNNNNNCGW	1 cut(s)	572
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	713
PkrI	GCNGC	8 cut(s)	13, 321, 396, 499, 502, 625, 628, 631
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PscI	ACATGT	1 cut(s)	537
PspEI	GGTNACC	1 cut(s)	350
PspFI	CCCAGC	2 cut(s)	150, 493
PspN4I	GGNNCC	3 cut(s)	59, 200, 588
PspOMI	GGGCCC	1 cut(s)	586
PspPI	GGNCC	3 cut(s)	481, 586, 587
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	626
PsuI	RGATCY	1 cut(s)	689
PvuII	CAGCTG	2 cut(s)	425, 623
RsaI	GTAC	2 cut(s)	98, 613
RsaNI	GTAC	2 cut(s)	97, 612
RseI	CAYNNNNRTG	1 cut(s)	604
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	8 cut(s)	12, 320, 395, 498, 501, 624, 627, 630
Sau3AI	GATC	5 cut(s)	81, 358, 617, 689, 697
Sau96I	GGNCC	3 cut(s)	481, 586, 587
SchI	GAGTC	1 cut(s)	117
ScrFI	CCNGG	1 cut(s)	737
SduI	GDGCHC	2 cut(s)	62, 590
SfaNI	GCATC	2 cut(s)	445, 605
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	604
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	2 cut(s)	16, 286
SsiI	CCGC	3 cut(s)	395, 497, 594
SspMI	CTAG	3 cut(s)	347, 639, 742
StyD4I	CCNGG	1 cut(s)	735
TasI	AATT	2 cut(s)	16, 286
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	2 cut(s)	397, 500
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	6 cut(s)	11, 319, 500, 623, 626, 629
TspDTI	ATGAA	5 cut(s)	33, 377, 479, 501, 717
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	481
XceI	RCATGY	2 cut(s)	541, 609
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	3 cut(s)	347, 639, 742
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.