Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0013121

Physical Location & Seq

Genomic Coordinates Reverse (-)

22808872 .. 22810650

Gene Structure 1779 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00018700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCTCCTGCAGCTAATTTTTCTGCTTCTTTTTCTTCTTCTTCATCCTCAAGATGGTGCCCAACCCCAGAGCAACTGATGATCCTTGAAGAGATGTACAGGGCTGGAGTCAGAACTCCAAATGCTTCCCAAATCCAACAAATCACTGCCCAGCTCTCTTTCTATGGAAAGATTGAGGGCAAGAATGTGTTCTACTGGTTCCAAAACCACAAGGCAAGGGACAGACAAAAGCTTAGGAGGAAGCTTTGCAAGCAACTTCAACTTCAACAGCAACAACTCTATCATAATTATTACCATTGTCAACATCATCATCAACAGCAGCTAATGCTCAACCAGCAGAGCCTTCTAGGTTACCTTGATCAATCCCCTTCTGCTTCTTCTGTTCTTCATCAGCCGCTTTGTTGTCATCATCATAACTTATCAGCTGGCTTTCTTCCTCAGGTGGGAGTTGAAGATGCATTGATGAACTACACACGCAAGGTCCACGAAATCCCAGCAGCAGCAGCAGCAGCAGAGAGATTGGAGATGGAGAAGTCGGTGCTGAACATGTATGGCCATGATTGGATGATGACGACGAAGAAGACGATGGATGTGGGCCCACCATCATCACCTGCATGTTGTACCAGATCAGCTGCTGCTTCTGCTGCCACTCCTAGACCCCTTAAAACACTCCAACTCTTCCCCGTCAAGTCCCCTAATCTCAGAGCTGAAGATCATGAAGAAGAAGAATCTACATCTAGAAACTATAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003002 GO:0003006 GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0007389 GO:0008150 GO:0008283 GO:0009791 GO:0009798 GO:0009889 GO:0009908 GO:0009943 GO:0009947 GO:0009955 GO:0010468 GO:0010556 GO:0010865 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097353 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Homeobox

Protein Analysis

250

Amino Acids

28.45

Weight (kDa)

8.8

Isoelectric Point (pI)

77.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	17 - 76	1.9e-14	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013121)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G28610
fragaria_vesca	FvH4_3g34410
malus_domestica	MD03G1106400.v1.1 MD11G1118500.v1.1
prunus_persica	Prupe.6G088900_v2.0.a1 Prupe.6G088900_v2.0.a1
pyrus_communis	pycom03g08570 pycom11g09980
rosa_chinensis	RchiOBHm_Chr5g0062001
rosa_laevigata	RLG00000035525
rosa_multiflora	Rmu_sc0002296.1_g000004
rosa_roxburghii	Rroxscaffold_1G00018700
rosa_rugosa	Rorug05G0345400
rosa_samantha	Rh5AG406700 Rh5BG420100 Rh5CG444200 Rh5DG435500
rosa_wichuraiana	Rw5G038330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	619
Acc36I	ACCTGC	1 cut(s)	619
AccB1I	GGYRCC	1 cut(s)	57
AciI	CCGC	1 cut(s)	395
AclWI	GGATC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	553
AcuI	CTGAAG	1 cut(s)	729
AfaI	GTAC	2 cut(s)	98, 622
AfiI	CCNNNNNNNGG	2 cut(s)	54, 443
AflIII	ACRYGT	1 cut(s)	546
AgsI	TTSAA	4 cut(s)	89, 260, 266, 452
AluBI	AGCT	8 cut(s)	14, 154, 232, 244, 322, 425, 632, 707
AluI	AGCT	8 cut(s)	14, 154, 232, 244, 322, 425, 632, 707
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	76
AlwNI	CAGNNNCTG	1 cut(s)	635
AoxI	GGCC	2 cut(s)	553, 595
ApaI	GGGCCC	1 cut(s)	599
Asp700I	GAANNNNTTC	1 cut(s)	188
AspS9I	GGNCC	3 cut(s)	481, 595, 596
AsuHPI	GGTGA	1 cut(s)	600
AvaII	GGWCC	1 cut(s)	481
AxyI	CCTNAGG	1 cut(s)	438
BaeGI	GKGCMC	2 cut(s)	62, 599
BalI	TGGCCA	1 cut(s)	555
BanI	GGYRCC	1 cut(s)	57
BanII	GRGCYC	1 cut(s)	599
BbsI	GAAGAC	1 cut(s)	587
BccI	CCATC	4 cut(s)	48, 520, 580, 610
BclI	TGATCA	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	3 cut(s)	347, 654, 738
BfmI	CTRYAG	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	619
Bme18I	GGWCC	1 cut(s)	481
BmgT120I	GGNCC	3 cut(s)	481, 595, 596
BmiI	GGNNCC	3 cut(s)	59, 200, 597
BmsI	GCATC	1 cut(s)	445
BpiI	GAAGAC	1 cut(s)	587
BpmI	CTGGAG	1 cut(s)	126
Bpu10I	CCTNAGC	1 cut(s)	233
BpuEI	CTTGAG	1 cut(s)	34
Bsc4I	CCNNNNNNNGG	2 cut(s)	54, 443
Bse1I	ACTGG	1 cut(s)	200
Bse21I	CCTNAGG	1 cut(s)	438
BseGI	GGATG	3 cut(s)	44, 570, 595
BseLI	CCNNNNNNNGG	2 cut(s)	54, 443
BseMII	CTCAG	2 cut(s)	452, 715
BseNI	ACTGG	1 cut(s)	200
BseSI	GKGCMC	2 cut(s)	62, 599
BseYI	CCCAGC	2 cut(s)	150, 493
BshFI	GGCC	2 cut(s)	555, 597
BshNI	GGYRCC	1 cut(s)	57
BslFI	GGGAC	2 cut(s)	233, 676
BslI	CCNNNNNNNGG	2 cut(s)	54, 443
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	2 cut(s)	233, 676
BsnI	GGCC	2 cut(s)	555, 597
Bsp120I	GGGCCC	1 cut(s)	595
Bsp1286I	GDGCHC	2 cut(s)	62, 599
Bsp1407I	TGTACA	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	81, 358, 626, 712
BspACI	CCGC	1 cut(s)	395
BspANI	GGCC	2 cut(s)	555, 597
BspCNI	CTCAG	2 cut(s)	451, 714
BspHI	TCATGA	1 cut(s)	715
BspLI	GGNNCC	3 cut(s)	59, 200, 597
BspMAI	CTGCAG	1 cut(s)	13
BspMI	ACCTGC	1 cut(s)	619
BspPI	GGATC	1 cut(s)	76
BspT107I	GGYRCC	1 cut(s)	57
BsrGI	TGTACA	1 cut(s)	96
BsrI	ACTGG	1 cut(s)	200
BssMI	GATC	4 cut(s)	81, 358, 626, 712
Bst6I	CTCTTC	2 cut(s)	84, 683
BstAPI	GCANNNNNTGC	1 cut(s)	325
BstAUI	TGTACA	1 cut(s)	96
BstC8I	GCNNGC	2 cut(s)	251, 427
BstDEI	CTNAG	3 cut(s)	233, 438, 701
BstEII	GGTNACC	1 cut(s)	350
BstF5I	GGATG	3 cut(s)	44, 570, 595
BstKTI	GATC	4 cut(s)	84, 361, 629, 715
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	4 cut(s)	81, 358, 626, 712
BstMWI	GCNNNNNNNGC	8 cut(s)	250, 325, 334, 503, 506, 509, 641, 644
BstNSI	RCATGY	2 cut(s)	550, 618
BstPI	GGTNACC	1 cut(s)	350
BstSFI	CTRYAG	1 cut(s)	9
BstSLI	GKGCMC	2 cut(s)	62, 599
BstV2I	GAAGAC	1 cut(s)	587
Bsu36I	CCTNAGG	1 cut(s)	438
BsuRI	GGCC	2 cut(s)	555, 597
BtsCI	GGATG	3 cut(s)	44, 570, 595
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
BveI	ACCTGC	1 cut(s)	619
Cac8I	GCNNGC	2 cut(s)	251, 427
CaiI	CAGNNNCTG	1 cut(s)	635
CciI	TCATGA	1 cut(s)	715
Cfr13I	GGNCC	3 cut(s)	481, 595, 596
Csp6I	GTAC	2 cut(s)	97, 621
CviAII	CATG	4 cut(s)	547, 557, 615, 716
CviQI	GTAC	2 cut(s)	97, 621
DdeI	CTNAG	3 cut(s)	233, 438, 701
DpnI	GATC	4 cut(s)	83, 360, 628, 714
DpnII	GATC	4 cut(s)	81, 358, 626, 712
EaeI	YGGCCR	1 cut(s)	553
Eam1104I	CTCTTC	2 cut(s)	84, 683
EarI	CTCTTC	2 cut(s)	84, 683
Eco24I	GRGCYC	1 cut(s)	599
Eco47I	GGWCC	1 cut(s)	481
Eco57I	CTGAAG	1 cut(s)	729
Eco81I	CCTNAGG	1 cut(s)	438
Eco91I	GGTNACC	1 cut(s)	350
EcoO65I	GGTNACC	1 cut(s)	350
EcoT22I	ATGCAT	1 cut(s)	460
EcoT38I	GRGCYC	1 cut(s)	599
FaeI	CATG	4 cut(s)	550, 560, 618, 719
FaiI	YATR	9 cut(s)	165, 285, 414, 548, 552, 558, 616, 717, 747
FaqI	GGGAC	2 cut(s)	233, 676
FatI	CATG	4 cut(s)	546, 556, 614, 715
FbaI	TGATCA	1 cut(s)	358
FokI	GGATG	3 cut(s)	31, 577, 602
FriOI	GRGCYC	1 cut(s)	599
FspBI	CTAG	3 cut(s)	347, 654, 738
GsaI	CCCAGC	2 cut(s)	154, 497
GsuI	CTGGAG	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	555, 597
Hin1II	CATG	4 cut(s)	550, 560, 618, 719
HincII	GTYRAC	1 cut(s)	302
HindII	GTYRAC	1 cut(s)	302
HindIII	AAGCTT	2 cut(s)	230, 242
HinfI	GANTC	2 cut(s)	108, 728
HphI	GGTGA	1 cut(s)	600
Hpy166II	GTNNAC	2 cut(s)	302, 484
Hpy188I	TCNGA	2 cut(s)	113, 704
Hpy188III	TCNNGA	3 cut(s)	51, 716, 738
Hpy8I	GTNNAC	2 cut(s)	302, 484
Hpy99I	CGWCG	1 cut(s)	577
HpyAV	CCTTC	2 cut(s)	353, 378
HpyCH4V	TGCA	4 cut(s)	11, 249, 458, 614
HpyF10VI	GCNNNNNNNGC	8 cut(s)	250, 325, 334, 503, 506, 509, 641, 644
HpyF3I	CTNAG	3 cut(s)	233, 438, 701
Hsp92II	CATG	4 cut(s)	550, 560, 618, 719
Ksp22I	TGATCA	1 cut(s)	358
Kzo9I	GATC	4 cut(s)	81, 358, 626, 712
LweI	GCATC	1 cut(s)	445
MaeI	CTAG	3 cut(s)	347, 654, 738
MaeIII	GTNAC	1 cut(s)	350
MalI	GATC	4 cut(s)	83, 360, 628, 714
MboI	GATC	4 cut(s)	81, 358, 626, 712
MhlI	GDGCHC	2 cut(s)	62, 599
MlsI	TGGCCA	1 cut(s)	555
MluCI	AATT	3 cut(s)	16, 286, 748
MluNI	TGGCCA	1 cut(s)	555
MlyI	GAGTC	1 cut(s)	117
MmeI	TCCRAC	2 cut(s)	160, 697
MnlI	CCTC	4 cut(s)	58, 169, 231, 447
Mox20I	TGGCCA	1 cut(s)	555
Mph1103I	ATGCAT	1 cut(s)	460
MroXI	GAANNNNTTC	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	555
MseI	TTAA	2 cut(s)	663, 751
MslI	CAYNNNNRTG	1 cut(s)	613
Msp20I	TGGCCA	1 cut(s)	555
MspA1I	CMGCKG	2 cut(s)	425, 632
MwoI	GCNNNNNNNGC	8 cut(s)	250, 325, 334, 503, 506, 509, 641, 644
NdeII	GATC	4 cut(s)	81, 358, 626, 712
NlaIII	CATG	4 cut(s)	550, 560, 618, 719
NlaIV	GGNNCC	3 cut(s)	59, 200, 597
NsiI	ATGCAT	1 cut(s)	460
NspI	RCATGY	2 cut(s)	550, 618
PagI	TCATGA	1 cut(s)	715
PaqCI	CACCTGC	1 cut(s)	619
PciI	ACATGT	1 cut(s)	546
PcsI	WCGNNNNNNNCGW	1 cut(s)	581
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	728
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
PscI	ACATGT	1 cut(s)	546
PspEI	GGTNACC	1 cut(s)	350
PspFI	CCCAGC	2 cut(s)	150, 493
PspN4I	GGNNCC	3 cut(s)	59, 200, 597
PspOMI	GGGCCC	1 cut(s)	595
PspPI	GGNCC	3 cut(s)	481, 595, 596
PstI	CTGCAG	1 cut(s)	13
PstNI	CAGNNNCTG	1 cut(s)	635
PvuII	CAGCTG	2 cut(s)	425, 632
RsaI	GTAC	2 cut(s)	98, 622
RsaNI	GTAC	2 cut(s)	97, 621
RseI	CAYNNNNRTG	1 cut(s)	613
SaqAI	TTAA	2 cut(s)	663, 751
Sau3AI	GATC	4 cut(s)	81, 358, 626, 712
Sau96I	GGNCC	3 cut(s)	481, 595, 596
SchI	GAGTC	1 cut(s)	117
SduI	GDGCHC	2 cut(s)	62, 599
SfaNI	GCATC	1 cut(s)	445
SfcI	CTRYAG	1 cut(s)	9
SinI	GGWCC	1 cut(s)	481
SmiMI	CAYNNNNRTG	1 cut(s)	613
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	3 cut(s)	16, 286, 748
SsiI	CCGC	1 cut(s)	395
SspMI	CTAG	3 cut(s)	347, 654, 738
TasI	AATT	3 cut(s)	16, 286, 748
TatI	WGTACW	1 cut(s)	96
TauI	GCSGC	1 cut(s)	397
TfiI	GAWTC	1 cut(s)	728
Tru1I	TTAA	2 cut(s)	663, 751
Tru9I	TTAA	2 cut(s)	663, 751
TscAI	CASTG	1 cut(s)	151
TspDTI	ATGAA	4 cut(s)	33, 377, 479, 732
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	481
XbaI	TCTAGA	1 cut(s)	737
XceI	RCATGY	2 cut(s)	550, 618
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	3 cut(s)	347, 654, 738
Zsp2I	ATGCAT	1 cut(s)	460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.