AT2G29065

Belongs to the GRAS family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
Physical Location & Seq
Forward (+)
12484658 .. 12487110
2453 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G29065.1

Sequence Viewer

Length: 1893 bp
ATGGATCCAAACTTCTCTGAATCTCTAAACGGCTTTGAGTATTTTGATGGTAACCCTAATTTGCTTACTGATCCAATGGAAGATCAGTATCCACCACCATCTGATACTCTGTTGAAATACGTGAGTGAGATTCTTATGGAAGAGAGTAATGGAGATTATAAGCAATCTATGTTCTATGATTCATTGGCTTTACGAAAAACTGAAGAAATGTTGCAGCAAGTCATTACTGATTCTCAAAATCAGTCCTTTAGTCCTGCTGATTCATTGATTACTAATTCTTGGGATGCAAGCGGAAGCATCGATGAATCGGCTTATTCGGCTGATCCGCAACCTGTGAATGAAATTATGGTTAAGAGTATGTTTAGTGATGCAGAATCAGCTTTACAGTTTAAGAAAGGGGTTGAAGAAGCTAGTAAATTCCTTCCCAATAGTGATCAATGGGTTATCAATCTGGATATCGAGAGATCCGAAAGGCGCGATTCGGTTAAAGAAGAGATGGGATTGGATCAGTTGAGAGTTAAGAAGAATCATGAAAGGGATTTTGAGGAAGTTAGGAGTAGTAAGCAATTTGCTAGTAATGTAGAAGATAGTAAGGTTACAGATATGTTTGATAAGGTTTTGCTTCTTGACGGTGAATGCGATCCGCAAACATTGTTAGACAGCGAGATTCAAGCGATTCGGAGTAGTAAGAACATAGGAGAGAAAGGGAAGAAGAAGAAGAAGAAGAAGAGTCAAGTGGTTGATTTTCGTACACTTCTCACTCATTGTGCACAAGCCATTTCCACAGGAGATAAAACCACGGCTCTTGAGTTTCTGTTACAGATAAGGCAACAGTCTTCGCCTCTCGGTGACGCGGGGCAAAGACTAGCTCATTGTTTCGCTAACGCGCTTGAAGCTCGTCTACAGGGAAGTACCGGTCCTATGATCCAGACTTATTACAATGCTTTAACCTCGTCGTTGAAGGATACTGCTGCGGATACAATTAGAGCGTATCGAGTTTATCTTTCTTCGTCTCCGTTTGTTACCTTGATGTATTTCTTCTCCATCTGGATGATTCTTGATGTGGCTAAAGATGCTCCTGTTCTTCATATAGTTGATTTTGGGATTCTATACGGGTTTCAATGGCCGATGTTTATTCAGTCTATATCAGATCGAAAAGATGTACCGCGGAAGCTGCGGATTACTGGTATCGAGCTTCCTCAGTGCGGGTTTCGGCCCGCGGAGCGAATAGAGGAGACAGGACGGAGATTGGCTGAGTATTGTAAACGGTTTAATGTTCCGTTTGAGTACAAAGCCATTGCGTCTCAGAACTGGGAAACAATCCGGATAGAAGATCTCGATATACGACCAAACGAAGTCTTAGCGGTTAATGCTGGACTTAGACTCAAGAACCTTCAAGATGAAACAGGAAGCGAAGAGAATTGCCCGAGAGATGCTGTCTTGAAGCTAATAAGAAACATGAACCCGGACGTTTTCATCCACGCGATTGTCAACGGTTCATTCAACGCACCCTTCTTTATCTCGCGGTTTAAAGAAGCGGTTTACCATTACTCCGCTCTCTTCGACATGTTTGATTCGACGTTGCCTCGGGATAACAAAGAGAGGATTAGGTTCGAGAGGGAGTTTTACGGGAGAGAGGCTATGAACGTGATAGCGTGCGAGGAAGCTGATCGAGTGGAGAGGCCTGAGACTTACAGGCAATGGCAGGTTAGAATGGTTAGAGCCGGGTTTAAGCAGAAAACGATTAAGCCTGAGCTGGTAGAGTTGTTTAGAGGAAAGCTGAAGAAATGGCGTTACCATAAAGACTTTGTGGTTGATGAAAATAGTAAATGGTTGTTACAAGGCTGGAAAGGTCGAACTCTCTATGCTTCTTCTTGTTGGGTTCCTGCCTAG

Protein Analysis

630

Amino Acids

72.53

Weight (kDa)

5.43

Isoelectric Point (pI)

50.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAS PF03514 250 - 627 1.9e-110 GRAS domain family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 159
Acc36I ACCTGC 1 cut(s) 1696
AccBSI CCGCTC 1 cut(s) 1556
AccI GTMKAC 1 cut(s) 901
AccII CGCG 7 cut(s) 477, 854, 887, 1168, 1220, 1484, 1525
AccIII TCCGGA 1 cut(s) 1323
AclWI GGATC 7 cut(s) 12, 65, 317, 459, 513, 635, 919
AcoI YGGCCR 1 cut(s) 1124
AcsI RAATTY 1 cut(s) 416
AcuI CTGAAG 2 cut(s) 222, 1802
AfaI GTAC 4 cut(s) 751, 913, 1164, 1289
AfiI CCNNNNNNNGG 1 cut(s) 1205
AflIII ACRYGT 1 cut(s) 1566
AgeI ACCGGT 1 cut(s) 914
AgsI TTSAA 9 cut(s) 115, 404, 671, 893, 961, 1121, 1397, 1444, 1504
Alw21I GWGCWC 1 cut(s) 772
Alw26I GTCTC 4 cut(s) 1017, 1229, 1308, 1682
Alw44I GTGCAC 1 cut(s) 768
AlwI GGATC 7 cut(s) 12, 65, 317, 459, 513, 635, 919
Ama87I CYCGRG 2 cut(s) 1426, 1587
Aor13HI TCCGGA 1 cut(s) 1323
AoxI GGCC 3 cut(s) 1124, 1214, 1682
ApaLI GTGCAC 1 cut(s) 768
ApeKI GCWGC 3 cut(s) 214, 971, 1174
ApoI RAATTY 1 cut(s) 416
AsiGI ACCGGT 1 cut(s) 914
AspLEI GCGC 2 cut(s) 477, 889
AspS9I GGNCC 2 cut(s) 917, 1215
AsuC2I CCSGG 2 cut(s) 1466, 1726
AsuHPI GGTGA 2 cut(s) 644, 860
AvaI CYCGRG 2 cut(s) 1426, 1587
AvaII GGWCC 1 cut(s) 917
BaeGI GKGCMC 1 cut(s) 772
BamHI GGATCC 1 cut(s) 4
BarI GAAGNNNNNNTAC 2 cut(s) 885, 917
BbsI GAAGAC 1 cut(s) 828
Bbv12I GWGCWC 1 cut(s) 772
BbvI GCAGC 3 cut(s) 226, 958, 1161
BccI CCATC 4 cut(s) 41, 106, 490, 1052
BceAI ACGGC 2 cut(s) 46, 816
BciVI GTATCC 3 cut(s) 99, 958, 970
BclI TGATCA 1 cut(s) 433
BcnI CCSGG 2 cut(s) 1466, 1726
BcoDI GTCTC 4 cut(s) 1017, 1229, 1308, 1682
BfaI CTAG 4 cut(s) 411, 573, 866, 1891
BfmI CTRYAG 1 cut(s) 902
BfuAI ACCTGC 1 cut(s) 1696
BfuI GTATCC 3 cut(s) 99, 958, 970
BglII AGATCT 1 cut(s) 1333
BisI GCNGC 3 cut(s) 215, 972, 1175
BlsI GCNGC 3 cut(s) 216, 973, 1176
Bme1390I CCNGG 2 cut(s) 1466, 1726
Bme18I GGWCC 1 cut(s) 917
BmeT110I CYCGRG 2 cut(s) 1426, 1587
BmgT120I GGNCC 2 cut(s) 917, 1215
BmiI GGNNCC 2 cut(s) 6, 1884
BmrFI CCNGG 2 cut(s) 1466, 1726
BmrI ACTGGG 1 cut(s) 1321
BmsI GCATC 5 cut(s) 274, 306, 358, 1063, 1423
BmuI ACTGGG 1 cut(s) 1321
BpiI GAAGAC 1 cut(s) 828
Bpu10I CCTNAGC 1 cut(s) 1752
BpuEI CTTGAG 2 cut(s) 827, 1370
BpuMI CCSGG 2 cut(s) 1466, 1726
Bsa29I ATCGAT 1 cut(s) 300
BsaAI YACGTR 1 cut(s) 121
BsaBI GATNNNNATC 1 cut(s) 87
BsaJI CCNNGG 4 cut(s) 798, 1166, 1218, 1586
BsaWI WCCGGW 2 cut(s) 914, 1323
BsaXI ACNNNNNCTCC 2 cut(s) 1535, 1565
Bsc4I CCNNNNNNNGG 1 cut(s) 1205
Bse118I RCCGGY 1 cut(s) 914
Bse1I ACTGG 2 cut(s) 1189, 1316
Bse3DI GCAATG 2 cut(s) 1296, 1706
Bse8I GATNNNNATC 1 cut(s) 87
BseAI TCCGGA 1 cut(s) 1323
BseCI ATCGAT 1 cut(s) 300
BseDI CCNNGG 4 cut(s) 798, 1166, 1218, 1586
BseGI GGATG 3 cut(s) 289, 1056, 1476
BseJI GATNNNNATC 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 1205
BseMI GCAATG 2 cut(s) 1296, 1706
BseMII CTCAG 5 cut(s) 1214, 1245, 1319, 1677, 1743
BseNI ACTGG 2 cut(s) 1189, 1316
BseRI GAGGAG 1 cut(s) 1247
BseSI GKGCMC 1 cut(s) 772
BseXI GCAGC 3 cut(s) 226, 958, 1161
Bsh1236I CGCG 7 cut(s) 477, 854, 887, 1168, 1220, 1484, 1525
BshFI GGCC 3 cut(s) 1126, 1216, 1684
BshTI ACCGGT 1 cut(s) 914
BshVI ATCGAT 1 cut(s) 300
BsiHKAI GWGCWC 1 cut(s) 772
BsiHKCI CYCGRG 2 cut(s) 1426, 1587
BsiSI CCGG 4 cut(s) 915, 1324, 1466, 1725
BslI CCNNNNNNNGG 1 cut(s) 1205
BsmAI GTCTC 4 cut(s) 1017, 1229, 1308, 1682
BsmBI CGTCTC 2 cut(s) 1017, 1308
BsmI GAATGC 1 cut(s) 641
BsnI GGCC 3 cut(s) 1126, 1216, 1684
BsoBI CYCGRG 2 cut(s) 1426, 1587
Bsp1286I GDGCHC 1 cut(s) 772
Bsp13I TCCGGA 1 cut(s) 1323
BspANI GGCC 3 cut(s) 1126, 1216, 1684
BspCNI CTCAG 5 cut(s) 1213, 1246, 1318, 1678, 1744
BspDI ATCGAT 1 cut(s) 300
BspEI TCCGGA 1 cut(s) 1323
BspFNI CGCG 7 cut(s) 477, 854, 887, 1168, 1220, 1484, 1525
BspHI TCATGA 1 cut(s) 529
BspLI GGNNCC 2 cut(s) 6, 1884
BspMI ACCTGC 1 cut(s) 1696
BspPI GGATC 7 cut(s) 12, 65, 317, 459, 513, 635, 919
BsrBI CCGCTC 1 cut(s) 1556
BsrDI GCAATG 2 cut(s) 1296, 1706
BsrFI RCCGGY 1 cut(s) 914
BsrI ACTGG 2 cut(s) 1189, 1316
BssAI RCCGGY 1 cut(s) 914
BssECI CCNNGG 4 cut(s) 798, 1166, 1218, 1586
Bst4CI ACNGT 5 cut(s) 387, 632, 834, 1269, 1496
Bst6I CTCTTC 5 cut(s) 135, 486, 722, 1410, 1565
BstBAI YACGTR 1 cut(s) 121
BstC8I GCNNGC 3 cut(s) 289, 1218, 1657
BstDEI CTNAG 7 cut(s) 1200, 1254, 1305, 1360, 1379, 1686, 1752
BstDSI CCRYGG 3 cut(s) 798, 1166, 1218
BstEII GGTNACC 1 cut(s) 50
BstF5I GGATG 3 cut(s) 289, 1056, 1476
BstFNI CGCG 7 cut(s) 477, 854, 887, 1168, 1220, 1484, 1525
BstHHI GCGC 2 cut(s) 477, 889
BstMAI GTCTC 4 cut(s) 1017, 1229, 1308, 1682
BstMWI GCNNNNNNNGC 7 cut(s) 317, 377, 893, 1073, 1174, 1222, 1370
BstNSI RCATGY 1 cut(s) 1570
BstPI GGTNACC 1 cut(s) 50
BstSCI CCNGG 2 cut(s) 1464, 1724
BstSFI CTRYAG 1 cut(s) 902
BstSLI GKGCMC 1 cut(s) 772
BstUI CGCG 7 cut(s) 477, 854, 887, 1168, 1220, 1484, 1525
BstV1I GCAGC 3 cut(s) 226, 958, 1161
BstV2I GAAGAC 1 cut(s) 828
BstX2I RGATCY 3 cut(s) 4, 464, 1333
BstYI RGATCY 3 cut(s) 4, 464, 1333
Bsu15I ATCGAT 1 cut(s) 300
BsuI GTATCC 3 cut(s) 99, 958, 970
BsuRI GGCC 3 cut(s) 1126, 1216, 1684
BsuTUI ATCGAT 1 cut(s) 300
BtgI CCRYGG 3 cut(s) 798, 1166, 1218
BtsCI GGATG 3 cut(s) 289, 1056, 1476
BtsIMutI CAGTG 1 cut(s) 1208
BveI ACCTGC 1 cut(s) 1696
Cac8I GCNNGC 3 cut(s) 289, 1218, 1657
CciI TCATGA 1 cut(s) 529
CfoI GCGC 2 cut(s) 477, 889
Cfr10I RCCGGY 1 cut(s) 914
Cfr13I GGNCC 2 cut(s) 917, 1215
Cfr42I CCGCGG 2 cut(s) 1169, 1221
ClaI ATCGAT 1 cut(s) 300
CseI GACGC 2 cut(s) 860, 1290
Csp6I GTAC 4 cut(s) 750, 912, 1163, 1288
CspAI ACCGGT 1 cut(s) 914
CspCI CAANNNNNGTGG 2 cut(s) 787, 822
CviAII CATG 3 cut(s) 530, 1459, 1567
CviQI GTAC 4 cut(s) 750, 912, 1163, 1288
DdeI CTNAG 7 cut(s) 1200, 1254, 1305, 1360, 1379, 1686, 1752
DraI TTTAAA 1 cut(s) 1531
EaeI YGGCCR 1 cut(s) 1124
Eam1104I CTCTTC 5 cut(s) 135, 486, 722, 1410, 1565
EarI CTCTTC 5 cut(s) 135, 486, 722, 1410, 1565
Eco147I AGGCCT 1 cut(s) 1684
Eco32I GATATC 1 cut(s) 457
Eco47I GGWCC 1 cut(s) 917
Eco57I CTGAAG 2 cut(s) 222, 1802
Eco88I CYCGRG 2 cut(s) 1426, 1587
Eco91I GGTNACC 1 cut(s) 50
EcoO65I GGTNACC 1 cut(s) 50
EcoRV GATATC 1 cut(s) 457
Esp3I CGTCTC 2 cut(s) 1017, 1308
FaeI CATG 3 cut(s) 533, 1462, 1570
FatI CATG 3 cut(s) 529, 1458, 1566
FauI CCCGC 3 cut(s) 847, 1199, 1225
FbaI TGATCA 1 cut(s) 433
FblI GTMKAC 1 cut(s) 901
Fnu4HI GCNGC 3 cut(s) 215, 972, 1175
FokI GGATG 3 cut(s) 296, 1063, 1463
Fsp4HI GCNGC 3 cut(s) 215, 972, 1175
FspBI CTAG 4 cut(s) 411, 573, 866, 1891
GlaI GCGC 2 cut(s) 476, 888
GluI GCNGC 3 cut(s) 215, 972, 1175
HaeIII GGCC 3 cut(s) 1126, 1216, 1684
HapII CCGG 4 cut(s) 915, 1324, 1466, 1725
HgaI GACGC 2 cut(s) 860, 1290
HhaI GCGC 2 cut(s) 477, 889
Hin1II CATG 3 cut(s) 533, 1462, 1570
Hin6I GCGC 2 cut(s) 475, 887
HinP1I GCGC 2 cut(s) 475, 887
HincII GTYRAC 1 cut(s) 1492
HindII GTYRAC 1 cut(s) 1492
HpaII CCGG 4 cut(s) 915, 1324, 1466, 1725
HphI GGTGA 2 cut(s) 644, 860
Hpy166II GTNNAC 6 cut(s) 752, 770, 902, 1265, 1492, 1543
Hpy188I TCNGA 6 cut(s) 19, 103, 469, 681, 1150, 1308
Hpy8I GTNNAC 6 cut(s) 752, 770, 902, 1265, 1492, 1543
Hpy99I CGWCG 2 cut(s) 958, 1582
HpyAV CCTTC 4 cut(s) 431, 955, 1403, 1522
HpyCH4III ACNGT 5 cut(s) 387, 632, 834, 1269, 1496
HpyCH4IV ACGT 4 cut(s) 120, 1470, 1580, 1647
HpyCH4V TGCA 4 cut(s) 214, 287, 371, 770
HpyF10VI GCNNNNNNNGC 7 cut(s) 317, 377, 893, 1073, 1174, 1222, 1370
HpyF3I CTNAG 7 cut(s) 1200, 1254, 1305, 1360, 1379, 1686, 1752
HpySE526I ACGT 4 cut(s) 120, 1470, 1580, 1647
Hsp92II CATG 3 cut(s) 533, 1462, 1570
HspAI GCGC 2 cut(s) 475, 887
Kpn2I TCCGGA 1 cut(s) 1323
Ksp22I TGATCA 1 cut(s) 433
KspI CCGCGG 2 cut(s) 1169, 1221
LmnI GCTCC 2 cut(s) 1081, 1222
Lsp1109I GCAGC 3 cut(s) 226, 958, 1161
LweI GCATC 5 cut(s) 274, 306, 358, 1063, 1423
MaeI CTAG 4 cut(s) 411, 573, 866, 1891
MaeII ACGT 4 cut(s) 120, 1470, 1580, 1647
MaeIII GTNAC 7 cut(s) 50, 595, 816, 848, 1021, 1793, 1836
MbiI CCGCTC 1 cut(s) 1556
MflI RGATCY 3 cut(s) 4, 464, 1333
MhlI GDGCHC 1 cut(s) 772
MluCI AATT 7 cut(s) 58, 274, 342, 416, 566, 981, 1420
MlyI GAGTC 2 cut(s) 739, 1377
MroI TCCGGA 1 cut(s) 1323
MslI CAYNNNNRTG 1 cut(s) 1049
MspA1I CMGCKG 2 cut(s) 1168, 1220
MspI CCGG 4 cut(s) 915, 1324, 1466, 1725
MspR9I CCNGG 2 cut(s) 1466, 1726
Mva1269I GAATGC 1 cut(s) 641
MvnI CGCG 7 cut(s) 477, 854, 887, 1168, 1220, 1484, 1525
MwoI GCNNNNNNNGC 7 cut(s) 317, 377, 893, 1073, 1174, 1222, 1370
NciI CCSGG 2 cut(s) 1466, 1726
NlaIII CATG 3 cut(s) 533, 1462, 1570
NlaIV GGNNCC 2 cut(s) 6, 1884
NmuCI GTSAC 1 cut(s) 848
NspI RCATGY 1 cut(s) 1570
PagI TCATGA 1 cut(s) 529
PceI AGGCCT 1 cut(s) 1684
PciI ACATGT 1 cut(s) 1566
PcsI WCGNNNNNNNCGW 2 cut(s) 465, 636
PctI GAATGC 1 cut(s) 641
PinAI ACCGGT 1 cut(s) 914
PkrI GCNGC 3 cut(s) 216, 973, 1176
PleI GAGTC 2 cut(s) 738, 1377
PpsI GAGTC 2 cut(s) 738, 1377
Ppu21I YACGTR 1 cut(s) 121
PscI ACATGT 1 cut(s) 1566
PsiI TTATAA 1 cut(s) 159
PspEI GGTNACC 1 cut(s) 50
PspN4I GGNNCC 2 cut(s) 6, 1884
PspPI GGNCC 2 cut(s) 917, 1215
PsuI RGATCY 3 cut(s) 4, 464, 1333
RsaI GTAC 4 cut(s) 751, 913, 1164, 1289
RsaNI GTAC 4 cut(s) 750, 912, 1163, 1288
RseI CAYNNNNRTG 1 cut(s) 1049
SacII CCGCGG 2 cut(s) 1169, 1221
SatI GCNGC 3 cut(s) 215, 972, 1175
Sau96I GGNCC 2 cut(s) 917, 1215
SchI GAGTC 2 cut(s) 739, 1377
ScrFI CCNGG 2 cut(s) 1466, 1726
SduI GDGCHC 1 cut(s) 772
SfaNI GCATC 5 cut(s) 274, 306, 358, 1063, 1423
SfcI CTRYAG 1 cut(s) 902
Sfr303I CCGCGG 2 cut(s) 1169, 1221
SgrBI CCGCGG 2 cut(s) 1169, 1221
SinI GGWCC 1 cut(s) 917
SmiMI CAYNNNNRTG 1 cut(s) 1049
SmlI CTYRAG 2 cut(s) 806, 1385
SmoI CTYRAG 2 cut(s) 806, 1385
Sse9I AATT 7 cut(s) 58, 274, 342, 416, 566, 981, 1420
SseBI AGGCCT 1 cut(s) 1684
SspMI CTAG 4 cut(s) 411, 573, 866, 1891
StuI AGGCCT 1 cut(s) 1684
StyD4I CCNGG 2 cut(s) 1464, 1724
TaaI ACNGT 5 cut(s) 387, 632, 834, 1269, 1496
TaiI ACGT 4 cut(s) 123, 1473, 1583, 1650
TasI AATT 7 cut(s) 58, 274, 342, 416, 566, 981, 1420
TatI WGTACW 1 cut(s) 1287
TscAI CASTG 1 cut(s) 1208
TseFI GTSAC 1 cut(s) 848
TseI GCWGC 3 cut(s) 214, 971, 1174
Tsp45I GTSAC 1 cut(s) 848
TspGWI ACGGA 3 cut(s) 1005, 1258, 1269
TspRI CASTG 1 cut(s) 1208
VneI GTGCAC 1 cut(s) 768
VpaK11BI GGWCC 1 cut(s) 917
XapI RAATTY 1 cut(s) 416
XceI RCATGY 1 cut(s) 1570
XmiI GTMKAC 1 cut(s) 901
XspI CTAG 4 cut(s) 411, 573, 866, 1891
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.