Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0003720

Physical Location & Seq

Genomic Coordinates Reverse (-)

8249625 .. 8252956

Gene Structure 3332 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1099000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3102 bp

ATGGATCATCCAACTGTCAATGGAAGTCCTGATTACTTGAATGGTTTCAGTATTGATGATCTAGCCTTCTCACCTGATTCAACTCAATTCTCAAATCTCACAAATGAATACCAATTTAACCAGTTCTCTCCGGATCTTAACTTTGTGGACAATCATTTTTCCCTTCCGCCCGATTTCGAACAGGGTAATATTGTTCCTAAAGTCAGTTTGACCACAAGTGGAGAGTCATTTGTTCCATCTAAAAGTTTGAGTCCACCTGATGGAGGCTCATTGTCTCTGCCTACGACTGTGAGCGTCGGAGGAGCAGACAGTTCCTCCGATGACAGTGATTTTTCTGAAGCTATTTTCAAATACGTAAACCAGATTCTTTTGGAAGAGAACATAGAGAAAAAGCCTTGCATGTTCTTTGATCCGTTGGGTCTTCGTGTGACTGAGAAATCGTTCTATGATGTTCTTGGTCAACGGTACCCCTTTTCACCCAATCAGCAACCACTTCATATCAATCCGAATGTTGAGAGTCCTGGTGGTAATAATTCTGGGAGTTGTAGTGATTGTAGTGGTAGTAATAATAGTCCTAGTCCTGGTACTAGCAATTCCAATGATCCTCAACGGGTTGGCGATTCGGGAGATCCAAAATCTTCTTTTCCACAAACTACCCTTCCCAGTGACAACCCTTTCCAGTTCAATTCACATTCGAGTTCACAGTTGTCTGTTCCTCTGGAAAATCGCATGACTAGTGTTGGTGATAGGCGGCATGTTGGTGGTGGGCAGCGCCTTGATGATATGCTACAGGGCTCCTCTGTAGAAGAGTTTGTGGCTCAGAATATATATACAGATAGTGATTCTATCTTGCAATTCCAGAGAGGGTTAGAGGAAGCTAGTAAATTCCTTCCGAAAAGCACTCAGCTGCTTGTTGATCTGGAAAGCAACACAGTGTCTCCAGAAGTGAAAGCAAGTGTGCCGATGGTTACTGTCAAGAAAGAAAAGAGTGAGCGGAAGAACTCACCTAATGGGTCAAAGGGAAGAAAGAATCGCGAGCGGGAAGATGTTGATCTTGAAGAAGGGAGGAGTAGCAAGCAGTCTGCAGTTTATATAGAAAAGACTGAAGAGAGTGAATTGTCTGAGATGTTTGACAAGGTGTTGCTGTCTACTGGCGGAAATAATGAATCTCAGTGTGGCAATGTTGCTTTTAAGAATGAAGCAAGCAAGACCTTGCAGCCTGGACAGCCACAAGGATCTAATGGTAATGGCGGGAAGGCTCGTGGTAAGAAACAAGGAAAGAAGAAGGAAACTGTGGATTTGCAGAATCTCCTGATTTTGTGTGCACAAGCCGTGTCTACCAATGATTTTAGGACCACTAGTGAACTGTTAAAGCAGGTTAGGCAGCACGCTTCTCCTAACGGTGATGGATCTCAAAGGTTGGCTCACTTCTTTGCGAATGGTCTTGAGGCTCGTATGGGTGGTACTGACACCGGAACCCAAAAGTTTTATACGTCCCTTGCCAAAAGGTCATCAGCCGTTGATGTGTTGAAATCTTACCACGTTCATCTTTCAGCTTGCCCTTTCAAGAGAATGTGTATGCTCTTCAAAAACAAGATGATTTTGAAGATGGCTGAGAAAGCAACAACCCTTCATATTGTCGATTTTGGTATCCTGTATGGTTTCCAGTGGCCATTCCTCATCCAGCATCTTTCAAAGAGACGTGGTGGACCTCCGAAGCTACGCATTACCGGGATAGAGGTTCCCCAACCTGGGTTTCGTCCAGCAGAGTGGATTGAAGAGACTGGACGTCGCTTGGCAAGATATTGTGAGCGTTTTAATGTACCTTTTGAGTACAATGCTATAGCTTCACAAGATTGGGAATCCATCCAACTGGAGGACCTTAAGACTGAAAGGAATGAGGTGCTTGCTGTGAACTGTATGTTACGGTTCAAGAACCTACTTGATGAGACCGTTGAAGTGAACTGTCCAAGGGATGGTGTTCTACAACTAATCAGAAGGATGAAACCAGATATTTTTGTCCACTCTATTATCAATGGTTCCTACAATGCCCCTTTCTTTGTCACTCGATTTCGGGAGGCTCTCTTCCACTACTCTTCCTTGTATGATGCATTTGATATTAATATACCCCGTGACAATGAAGAGAGGTTGAGGTTTGAGAGTGAGTTCTATGGCAGGGAAGCTATGAATGTAATAGCATGTGAGGGCGTAGAGCGGGTTGAGAGGCCTGAGACATATAAGCAGTGGCAGGTTCGATGCATGAGGGCTGGTTTACAGCCGTTGCAATTGGACCAAGATTTAGTGAAGATTCTTAAGGATAAGGTGAAGGCATGGTACCACAAAGATTTTGTAGTTGATCAAGATAGTGATTGGATGCTTCAAGGATGGAAGGGCCGAATTGTGTATGCTTCTTCTTGTTGGACAGGCCACCGTTTGGCAAAGTATTGTGAGTGGTATAATGTTCCTTTCGAGTACAATGGCATCGCAAAGAAATGGGAAGCTATCCAATATGAGGAACTCAATGTCAAGAGAGATGAAGTGCTTGCTGTGAATTGTCTGTTCCGGTTTAAAAACCTACTTGACGAGACAGTTGTGGTAAACAGCCCAAGGGATGCTGTTCTAAATTTCATTAGGAGCATGAATCCTGATATCTTTATCCATAGTGTCATTAATGGATCTTACAATGCCCCATTCTACGTCACACCCTTCAGGGAGGCTCTATCCCACTTCTCTGCATTGTTTGATATGTTTGATACCAATTTATCTCGTGAAGATCCGATGAGATTGATGTTTGAGGAAGAATTCCTTGGACGAGAGGTTGTGAACACAATAGCTTGCGAGGGCTCTGAGAGAGTTGTGAGGCCTGAGACATATAAGCAGTGGCAGGTTCGGAACATGAGGGCCGGGTTCAAACAGTTGCCATTGAACCGTGAACTCATGAACAAATTAAGGGCGAACGTGAAGCTGGGGTACCACCGTGATTTCGTGGTTGATGAAGATGGAAACTGGATGCTACAAGGATGGAAGGGCAGGATTATCTACAATTCCTCGCGTTGGGTACCGTCTAGGTCTTGCAATGCATGCTTGTTAGAACAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

1034

Amino Acids

117.15

Weight (kDa)

5.91

Isoelectric Point (pI)

51.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	434 - 808	6.8e-114	GRAS domain family
GRAS	PF03514	808 - 1019	1.2e-59	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07520 AT1G07520 AT1G07520 AT1G07520 AT2G29065
fragaria_vesca	FvH4_3g36662 FvH4_3g36662 FvH4_3g36662 FvH4_3g36670 FvH4_3g36680 FvH4_3g36680
malus_domestica	MD03G1089700.v1.1 MD11G1099000.v1.1
prunus_persica	Prupe.6G073900_v2.0.a1
pyrus_communis	pycom03g07130 pycom11g08320
rosa_chinensis	RchiOBHm_Chr5g0065571 RchiOBHm_Chr5g0065581
rosa_laevigata	RLG00000035798 RLG00000035799
rosa_multiflora	Rmu_sc0001010.1_g000052 Rmu_sc0035977.1_g000002
rosa_roxburghii	Rroxscaffold_1G00015640
rosa_rugosa	Rorug05G0372600 Rorug05G0372700
rosa_samantha	Rh5AG430700 Rh5AG430800 Rh5BG446800 Rh5BG446900 Rh5CG468700 Rh5CG468800 Rh5DG459300 Rh5DG459400
rosa_wichuraiana	Rw5G040410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1792
Acc36I	ACCTGC	3 cut(s)	1366, 2239, 2875
Acc65I	GGTACC	4 cut(s)	465, 2334, 2970, 3058
AccB1I	GGYRCC	4 cut(s)	465, 2334, 2970, 3058
AccB7I	CCANNNNNTGG	3 cut(s)	260, 1976, 2434
AccBSI	CCGCTC	3 cut(s)	994, 1039, 2215
AccI	GTMKAC	2 cut(s)	1148, 1337
AccII	CGCG	2 cut(s)	1035, 3052
AccIII	TCCGGA	1 cut(s)	130
AciI	CCGC	7 cut(s)	167, 751, 994, 1039, 1155, 1251, 2215
AclWI	GGATC	9 cut(s)	12, 141, 404, 596, 623, 1243, 1417, 2683, 2768
AcoI	YGGCCR	1 cut(s)	1670
AcsI	RAATTY	3 cut(s)	884, 2623, 2801
AcuI	CTGAAG	3 cut(s)	357, 1125, 2692
AcyI	GRCGYC	1 cut(s)	1789
AfaI	GTAC	9 cut(s)	467, 586, 1465, 1824, 1835, 2336, 2474, 2972, 3060
AflII	CTTAAG	2 cut(s)	1883, 2312
AhdI	GACNNNNNGTC	1 cut(s)	1788
AhlI	ACTAGT	2 cut(s)	734, 1358
AjiI	CACGTC	1 cut(s)	1703
AjnI	CCWGG	4 cut(s)	520, 580, 1219, 1750
AjuI	GAANNNNNNNTTGG	4 cut(s)	1740, 1772, 2790, 2822
Alw21I	GWGCWC	1 cut(s)	1327
Alw26I	GTCTC	8 cut(s)	279, 942, 1693, 1775, 1943, 2225, 2579, 2861
Alw44I	GTGCAC	1 cut(s)	1323
AlwI	GGATC	9 cut(s)	12, 141, 404, 596, 623, 1243, 1417, 2683, 2768
Aor13HI	TCCGGA	1 cut(s)	130
AoxI	GGCC	6 cut(s)	1670, 2225, 2392, 2425, 2861, 2901
ApaLI	GTGCAC	1 cut(s)	1323
ApeKI	GCWGC	4 cut(s)	769, 907, 1216, 1384
ApoI	RAATTY	3 cut(s)	884, 2623, 2801
AseI	ATTAAT	2 cut(s)	2121, 2670
Asp700I	GAANNNNTTC	2 cut(s)	44, 440
Asp718I	GGTACC	4 cut(s)	465, 2334, 2970, 3058
AspLEI	GCGC	1 cut(s)	774
AspS9I	GGNCC	6 cut(s)	1353, 1709, 1879, 2290, 2392, 2901
AsuC2I	CCSGG	2 cut(s)	1732, 2905
AsuHPI	GGTGA	6 cut(s)	63, 468, 755, 996, 1415, 2335
AsuII	TTCGAA	1 cut(s)	177
AvaII	GGWCC	4 cut(s)	1353, 1709, 1879, 2290
BaeGI	GKGCMC	1 cut(s)	1327
BaeI	ACNNNNGTAYC	2 cut(s)	2962, 2995
BalI	TGGCCA	1 cut(s)	1672
BanI	GGYRCC	4 cut(s)	465, 2334, 2970, 3058
BanII	GRGCYC	2 cut(s)	797, 2846
BarI	GAAGNNNNNNTAC	4 cut(s)	2318, 2350, 2954, 2986
BauI	CACGAG	2 cut(s)	1260, 2766
BbsI	GAAGAC	1 cut(s)	413
Bbv12I	GWGCWC	1 cut(s)	1327
BbvI	GCAGC	4 cut(s)	781, 894, 1228, 1396
BceAI	ACGGC	3 cut(s)	1316, 1502, 2263
BciT130I	CCWGG	4 cut(s)	522, 582, 1221, 1752
BciVI	GTATCC	1 cut(s)	1661
BclI	TGATCA	1 cut(s)	2356
BcnI	CCSGG	2 cut(s)	1732, 2905
BcoDI	GTCTC	8 cut(s)	279, 942, 1693, 1775, 1943, 2225, 2579, 2861
BcuI	ACTAGT	2 cut(s)	734, 1358
BfaI	CTAG	7 cut(s)	62, 576, 588, 735, 879, 1359, 3066
BfmI	CTRYAG	4 cut(s)	788, 801, 1083, 1842
BfoI	RGCGCY	1 cut(s)	775
BfrI	CTTAAG	2 cut(s)	1883, 2312
BfuAI	ACCTGC	3 cut(s)	1366, 2239, 2875
BfuI	GTATCC	1 cut(s)	1661
BisI	GCNGC	5 cut(s)	752, 770, 908, 1217, 1385
BlsI	GCNGC	5 cut(s)	753, 771, 909, 1218, 1386
Bme1390I	CCNGG	6 cut(s)	522, 582, 1221, 1732, 1752, 2905
Bme18I	GGWCC	4 cut(s)	1353, 1709, 1879, 2290
BmeRI	GACNNNNNGTC	1 cut(s)	1788
BmgBI	CACGTC	1 cut(s)	1703
BmgT120I	GGNCC	6 cut(s)	1353, 1709, 1879, 2290, 2392, 2901
BmiI	GGNNCC	8 cut(s)	467, 796, 1477, 1743, 2041, 2336, 2972, 3060
BmrFI	CCNGG	6 cut(s)	522, 582, 1221, 1732, 1752, 2905
BmrI	ACTGGG	1 cut(s)	657
BmsI	GCATC	7 cut(s)	1696, 2098, 2246, 2364, 2490, 2602, 3000
BmuI	ACTGGG	1 cut(s)	657
BpiI	GAAGAC	1 cut(s)	413
BpmI	CTGGAG	2 cut(s)	924, 1895
Bpu14I	TTCGAA	1 cut(s)	177
BpuEI	CTTGAG	1 cut(s)	1466
BpuMI	CCSGG	2 cut(s)	1732, 2905
BsaAI	YACGTR	1 cut(s)	355
BsaBI	GATNNNNATC	1 cut(s)	1050
BsaHI	GRCGYC	1 cut(s)	1789
BsaI	GGTCTC	1 cut(s)	1943
BsaJI	CCNNGG	4 cut(s)	1751, 1970, 2606, 2806
BsaWI	WCCGGW	3 cut(s)	130, 1472, 2562
BsaXI	ACNNNNNCTCC	6 cut(s)	299, 329, 532, 562, 922, 952
Bse1I	ACTGG	8 cut(s)	121, 663, 679, 1156, 1666, 1789, 1878, 3011
Bse3DI	GCAATG	2 cut(s)	1186, 3082
Bse8I	GATNNNNATC	1 cut(s)	1050
BseAI	TCCGGA	1 cut(s)	130
BseBI	CCWGG	4 cut(s)	522, 582, 1221, 1752
BseDI	CCNNGG	4 cut(s)	1751, 1970, 2606, 2806
BseJI	GATNNNNATC	1 cut(s)	1050
BseMI	GCAATG	2 cut(s)	1186, 3082
BseMII	CTCAG	9 cut(s)	423, 833, 917, 1113, 1184, 1605, 2220, 2838, 2856
BseNI	ACTGG	8 cut(s)	121, 663, 679, 1156, 1666, 1789, 1878, 3011
BseRI	GAGGAG	3 cut(s)	315, 787, 1081
BseSI	GKGCMC	1 cut(s)	1327
BseXI	GCAGC	4 cut(s)	781, 894, 1228, 1396
BseYI	CCCAGC	1 cut(s)	2965
Bsh1236I	CGCG	2 cut(s)	1035, 3052
BshFI	GGCC	6 cut(s)	1672, 2227, 2394, 2427, 2863, 2903
BshNI	GGYRCC	4 cut(s)	465, 2334, 2970, 3058
BsiHKAI	GWGCWC	1 cut(s)	1327
BsiSI	CCGG	5 cut(s)	131, 1473, 1731, 2563, 2904
BslFI	GGGAC	1 cut(s)	1480
BsmAI	GTCTC	8 cut(s)	279, 942, 1693, 1775, 1943, 2225, 2579, 2861
BsmBI	CGTCTC	1 cut(s)	1693
BsmFI	GGGAC	1 cut(s)	1480
BsnI	GGCC	6 cut(s)	1672, 2227, 2394, 2427, 2863, 2903
Bso31I	GGTCTC	1 cut(s)	1943
Bsp119I	TTCGAA	1 cut(s)	177
Bsp1286I	GDGCHC	3 cut(s)	797, 1327, 2846
Bsp13I	TCCGGA	1 cut(s)	130
Bsp68I	TCGCGA	1 cut(s)	1035
BspACI	CCGC	7 cut(s)	167, 751, 994, 1039, 1155, 1251, 2215
BspANI	GGCC	6 cut(s)	1672, 2227, 2394, 2427, 2863, 2903
BspCNI	CTCAG	9 cut(s)	424, 832, 916, 1114, 1183, 1606, 2221, 2839, 2857
BspEI	TCCGGA	1 cut(s)	130
BspFNI	CGCG	2 cut(s)	1035, 3052
BspHI	TCATGA	1 cut(s)	2937
BspLI	GGNNCC	8 cut(s)	467, 796, 1477, 1743, 2041, 2336, 2972, 3060
BspMAI	CTGCAG	1 cut(s)	1087
BspMI	ACCTGC	3 cut(s)	1366, 2239, 2875
BspPI	GGATC	9 cut(s)	12, 141, 404, 596, 623, 1243, 1417, 2683, 2768
BspQI	GCTCTTC	1 cut(s)	1589
BspT104I	TTCGAA	1 cut(s)	177
BspT107I	GGYRCC	4 cut(s)	465, 2334, 2970, 3058
BspTI	CTTAAG	2 cut(s)	1883, 2312
BspTNI	GGTCTC	1 cut(s)	1943
BsrBI	CCGCTC	3 cut(s)	994, 1039, 2215
BsrDI	GCAATG	2 cut(s)	1186, 3082
BsrI	ACTGG	8 cut(s)	121, 663, 679, 1156, 1666, 1789, 1878, 3011
BssECI	CCNNGG	4 cut(s)	1751, 1970, 2606, 2806
BssNI	GRCGYC	1 cut(s)	1789
BssSI	CACGAG	2 cut(s)	1260, 2766
BssT1I	CCWWGG	3 cut(s)	1970, 2606, 2806
Bst2BI	CACGAG	2 cut(s)	1260, 2766
Bst2UI	CCWGG	4 cut(s)	522, 582, 1221, 1752
Bst6I	CTCTTC	8 cut(s)	369, 801, 1101, 1589, 1773, 2090, 2101, 2136
BstACI	GRCGYC	1 cut(s)	1789
BstAFI	CTTAAG	2 cut(s)	1883, 2312
BstAPI	GCANNNNNTGC	1 cut(s)	3081
BstBAI	YACGTR	1 cut(s)	355
BstBI	TTCGAA	1 cut(s)	177
BstC8I	GCNNGC	9 cut(s)	1037, 1076, 1204, 1389, 1558, 1908, 2544, 2836, 3082
BstDEI	CTNAG	9 cut(s)	432, 819, 903, 1122, 1170, 1614, 2229, 2847, 2865
BstENI	CCTNNNNNAGG	1 cut(s)	261
BstFNI	CGCG	2 cut(s)	1035, 3052
BstH2I	RGCGCY	1 cut(s)	775
BstHHI	GCGC	1 cut(s)	774
BstMAI	GTCTC	8 cut(s)	279, 942, 1693, 1775, 1943, 2225, 2579, 2861
BstMWI	GCNNNNNNNGC	4 cut(s)	1225, 1381, 1619, 3081
BstNI	CCWGG	4 cut(s)	522, 582, 1221, 1752
BstNSI	RCATGY	4 cut(s)	403, 758, 2202, 3084
BstSCI	CCNGG	6 cut(s)	520, 580, 1219, 1730, 1750, 2903
BstSFI	CTRYAG	4 cut(s)	788, 801, 1083, 1842
BstSLI	GKGCMC	1 cut(s)	1327
BstSNI	TACGTA	1 cut(s)	355
BstUI	CGCG	2 cut(s)	1035, 3052
BstV1I	GCAGC	4 cut(s)	781, 894, 1228, 1396
BstV2I	GAAGAC	1 cut(s)	413
BstX2I	RGATCY	6 cut(s)	133, 628, 1235, 1409, 2675, 2773
BstXI	CCANNNNNNTGG	2 cut(s)	1770, 1873
BstYI	RGATCY	6 cut(s)	133, 628, 1235, 1409, 2675, 2773
BsuI	GTATCC	1 cut(s)	1661
BsuRI	GGCC	6 cut(s)	1672, 2227, 2394, 2427, 2863, 2903
BtgZI	GCGATG	1 cut(s)	2467
BtrI	CACGTC	1 cut(s)	1703
BtsI	GCAGTG	2 cut(s)	2249, 2885
BtsIMutI	CAGTG	7 cut(s)	331, 670, 939, 1178, 1673, 2249, 2885
BtuMI	TCGCGA	1 cut(s)	1035
BveI	ACCTGC	3 cut(s)	1366, 2239, 2875
Cac8I	GCNNGC	9 cut(s)	1037, 1076, 1204, 1389, 1558, 1908, 2544, 2836, 3082
CciI	TCATGA	1 cut(s)	2937
CfoI	GCGC	1 cut(s)	774
Cfr13I	GGNCC	6 cut(s)	1353, 1709, 1879, 2290, 2392, 2901
CseI	GACGC	1 cut(s)	283
Csp6I	GTAC	9 cut(s)	466, 585, 1464, 1823, 1834, 2335, 2473, 2971, 3059
CviQI	GTAC	9 cut(s)	466, 585, 1464, 1823, 1834, 2335, 2473, 2971, 3059
DdeI	CTNAG	9 cut(s)	432, 819, 903, 1122, 1170, 1614, 2229, 2847, 2865
DraI	TTTAAA	1 cut(s)	2569
DriI	GACNNNNNGTC	1 cut(s)	1788
EaeI	YGGCCR	1 cut(s)	1670
Eam1104I	CTCTTC	8 cut(s)	369, 801, 1101, 1589, 1773, 2090, 2101, 2136
Eam1105I	GACNNNNNGTC	1 cut(s)	1788
EarI	CTCTTC	8 cut(s)	369, 801, 1101, 1589, 1773, 2090, 2101, 2136
EciI	GGCGGA	2 cut(s)	156, 1170
Eco105I	TACGTA	1 cut(s)	355
Eco130I	CCWWGG	3 cut(s)	1970, 2606, 2806
Eco147I	AGGCCT	2 cut(s)	2227, 2863
Eco24I	GRGCYC	2 cut(s)	797, 2846
Eco31I	GGTCTC	1 cut(s)	1943
Eco32I	GATATC	1 cut(s)	2650
Eco47I	GGWCC	4 cut(s)	1353, 1709, 1879, 2290
Eco57I	CTGAAG	3 cut(s)	357, 1125, 2692
EcoNI	CCTNNNNNAGG	1 cut(s)	261
EcoO109I	RGGNCCY	1 cut(s)	1879
EcoRI	GAATTC	1 cut(s)	2801
EcoRII	CCWGG	4 cut(s)	520, 580, 1219, 1750
EcoRV	GATATC	1 cut(s)	2650
EcoT14I	CCWWGG	3 cut(s)	1970, 2606, 2806
EcoT22I	ATGCAT	3 cut(s)	2113, 2261, 3082
EcoT38I	GRGCYC	2 cut(s)	797, 2846
ErhI	CCWWGG	3 cut(s)	1970, 2606, 2806
Esp3I	CGTCTC	1 cut(s)	1693
FalI	AAGNNNNNCTT	2 cut(s)	2790, 2822
FaqI	GGGAC	1 cut(s)	1480
FauI	CCCGC	3 cut(s)	1032, 1244, 2208
FbaI	TGATCA	1 cut(s)	2356
FblI	GTMKAC	2 cut(s)	1148, 1337
Fnu4HI	GCNGC	5 cut(s)	752, 770, 908, 1217, 1385
FokI	GGATG	9 cut(s)	1667, 1853, 1988, 2014, 2386, 2397, 2624, 3022, 3033
FriOI	GRGCYC	2 cut(s)	797, 2846
Fsp4HI	GCNGC	5 cut(s)	752, 770, 908, 1217, 1385
FspBI	CTAG	7 cut(s)	62, 576, 588, 735, 879, 1359, 3066
GlaI	GCGC	1 cut(s)	773
GluI	GCNGC	5 cut(s)	752, 770, 908, 1217, 1385
GsaI	CCCAGC	1 cut(s)	2969
GsuI	CTGGAG	2 cut(s)	924, 1895
HaeII	RGCGCY	1 cut(s)	775
HaeIII	GGCC	6 cut(s)	1672, 2227, 2394, 2427, 2863, 2903
HapII	CCGG	5 cut(s)	131, 1473, 1731, 2563, 2904
HgaI	GACGC	1 cut(s)	283
HhaI	GCGC	1 cut(s)	774
Hin1I	GRCGYC	1 cut(s)	1789
Hin6I	GCGC	1 cut(s)	772
HinP1I	GCGC	1 cut(s)	772
HincII	GTYRAC	1 cut(s)	461
HindII	GTYRAC	1 cut(s)	461
HpaII	CCGG	5 cut(s)	131, 1473, 1731, 2563, 2904
HphI	GGTGA	6 cut(s)	63, 468, 755, 996, 1415, 2335
Hpy99I	CGWCG	2 cut(s)	299, 1794
HpyCH4IV	ACGT	7 cut(s)	354, 1493, 1542, 1702, 1789, 2697, 2958
HpyF10VI	GCNNNNNNNGC	4 cut(s)	1225, 1381, 1619, 3081
HpyF3I	CTNAG	9 cut(s)	432, 819, 903, 1122, 1170, 1614, 2229, 2847, 2865
HpySE526I	ACGT	7 cut(s)	354, 1493, 1542, 1702, 1789, 2697, 2958
Hsp92I	GRCGYC	1 cut(s)	1789
HspAI	GCGC	1 cut(s)	772
Kpn2I	TCCGGA	1 cut(s)	130
KpnI	GGTACC	4 cut(s)	469, 2338, 2974, 3062
Ksp22I	TGATCA	1 cut(s)	2356
LguI	GCTCTTC	1 cut(s)	1589
LmnI	GCTCC	3 cut(s)	302, 800, 2634
Lsp1109I	GCAGC	4 cut(s)	781, 894, 1228, 1396
LweI	GCATC	7 cut(s)	1696, 2098, 2246, 2364, 2490, 2602, 3000
MaeI	CTAG	7 cut(s)	62, 576, 588, 735, 879, 1359, 3066
MaeII	ACGT	7 cut(s)	354, 1493, 1542, 1702, 1789, 2697, 2958
MaeIII	GTNAC	7 cut(s)	427, 665, 967, 1923, 2062, 2132, 2698
MbiI	CCGCTC	3 cut(s)	994, 1039, 2215
MfeI	CAATTG	1 cut(s)	2285
MflI	RGATCY	6 cut(s)	133, 628, 1235, 1409, 2675, 2773
MhlI	GDGCHC	3 cut(s)	797, 1327, 2846
MlsI	TGGCCA	1 cut(s)	1672
MluNI	TGGCCA	1 cut(s)	1672
MlyI	GAGTC	3 cut(s)	233, 259, 526
MmeI	TCCRAC	4 cut(s)	35, 277, 1894, 2399
Mox20I	TGGCCA	1 cut(s)	1672
Mph1103I	ATGCAT	3 cut(s)	2113, 2261, 3082
MroI	TCCGGA	1 cut(s)	130
MroXI	GAANNNNTTC	2 cut(s)	44, 440
MscI	TGGCCA	1 cut(s)	1672
MslI	CAYNNNNRTG	1 cut(s)	759
Msp20I	TGGCCA	1 cut(s)	1672
MspA1I	CMGCKG	1 cut(s)	907
MspCI	CTTAAG	2 cut(s)	1883, 2312
MspI	CCGG	5 cut(s)	131, 1473, 1731, 2563, 2904
MspR9I	CCNGG	6 cut(s)	522, 582, 1221, 1732, 1752, 2905
MunI	CAATTG	1 cut(s)	2285
MvaI	CCWGG	4 cut(s)	522, 582, 1221, 1752
MvnI	CGCG	2 cut(s)	1035, 3052
MwoI	GCNNNNNNNGC	4 cut(s)	1225, 1381, 1619, 3081
NciI	CCSGG	2 cut(s)	1732, 2905
NlaIV	GGNNCC	8 cut(s)	467, 796, 1477, 1743, 2041, 2336, 2972, 3060
NmuCI	GTSAC	5 cut(s)	427, 665, 2062, 2132, 2698
NruI	TCGCGA	1 cut(s)	1035
NsiI	ATGCAT	3 cut(s)	2113, 2261, 3082
NspI	RCATGY	4 cut(s)	403, 758, 2202, 3084
NspV	TTCGAA	1 cut(s)	177
PaeI	GCATGC	1 cut(s)	3084
PagI	TCATGA	1 cut(s)	2937
PceI	AGGCCT	2 cut(s)	2227, 2863
PciSI	GCTCTTC	1 cut(s)	1589
PdmI	GAANNNNTTC	2 cut(s)	44, 440
PflMI	CCANNNNNTGG	3 cut(s)	260, 1976, 2434
PkrI	GCNGC	5 cut(s)	753, 771, 909, 1218, 1386
PleI	GAGTC	3 cut(s)	232, 258, 525
PpsI	GAGTC	3 cut(s)	232, 258, 525
Ppu21I	YACGTR	1 cut(s)	355
PpuMI	RGGWCCY	1 cut(s)	1879
PshBI	ATTAAT	2 cut(s)	2121, 2670
Psp5II	RGGWCCY	1 cut(s)	1879
Psp6I	CCWGG	4 cut(s)	520, 580, 1219, 1750
PspFI	CCCAGC	1 cut(s)	2965
PspGI	CCWGG	4 cut(s)	520, 580, 1219, 1750
PspN4I	GGNNCC	8 cut(s)	467, 796, 1477, 1743, 2041, 2336, 2972, 3060
PspPI	GGNCC	6 cut(s)	1353, 1709, 1879, 2290, 2392, 2901
PspPPI	RGGWCCY	1 cut(s)	1879
PstI	CTGCAG	1 cut(s)	1087
PsuI	RGATCY	6 cut(s)	133, 628, 1235, 1409, 2675, 2773
PvuII	CAGCTG	1 cut(s)	907
RruI	TCGCGA	1 cut(s)	1035
RsaI	GTAC	9 cut(s)	467, 586, 1465, 1824, 1835, 2336, 2474, 2972, 3060
RsaNI	GTAC	9 cut(s)	466, 585, 1464, 1823, 1834, 2335, 2473, 2971, 3059
RseI	CAYNNNNRTG	1 cut(s)	759
SapI	GCTCTTC	1 cut(s)	1589
SatI	GCNGC	5 cut(s)	752, 770, 908, 1217, 1385
Sau96I	GGNCC	6 cut(s)	1353, 1709, 1879, 2290, 2392, 2901
SchI	GAGTC	3 cut(s)	233, 259, 526
ScrFI	CCNGG	6 cut(s)	522, 582, 1221, 1732, 1752, 2905
SduI	GDGCHC	3 cut(s)	797, 1327, 2846
SfaNI	GCATC	7 cut(s)	1696, 2098, 2246, 2364, 2490, 2602, 3000
SfcI	CTRYAG	4 cut(s)	788, 801, 1083, 1842
SfuI	TTCGAA	1 cut(s)	177
SinI	GGWCC	4 cut(s)	1353, 1709, 1879, 2290
SmiMI	CAYNNNNRTG	1 cut(s)	759
SmlI	CTYRAG	3 cut(s)	1445, 1883, 2312
SmoI	CTYRAG	3 cut(s)	1445, 1883, 2312
SnaBI	TACGTA	1 cut(s)	355
SpeI	ACTAGT	2 cut(s)	734, 1358
SphI	GCATGC	1 cut(s)	3084
SseBI	AGGCCT	2 cut(s)	2227, 2863
SsiI	CCGC	7 cut(s)	167, 751, 994, 1039, 1155, 1251, 2215
SspI	AATATT	1 cut(s)	190
SspMI	CTAG	7 cut(s)	62, 576, 588, 735, 879, 1359, 3066
StuI	AGGCCT	2 cut(s)	2227, 2863
StyD4I	CCNGG	6 cut(s)	520, 580, 1219, 1730, 1750, 2903
StyI	CCWWGG	3 cut(s)	1970, 2606, 2806
TaiI	ACGT	7 cut(s)	357, 1496, 1545, 1705, 1792, 2700, 2961
TaqI	TCGA	6 cut(s)	177, 695, 1641, 2068, 2254, 2469
TatI	WGTACW	2 cut(s)	1833, 2472
TauI	GCSGC	1 cut(s)	754
TscAI	CASTG	7 cut(s)	331, 670, 939, 1178, 1673, 2249, 2885
TseFI	GTSAC	5 cut(s)	427, 665, 2062, 2132, 2698
TseI	GCWGC	4 cut(s)	769, 907, 1216, 1384
Tsp45I	GTSAC	5 cut(s)	427, 665, 2062, 2132, 2698
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	7 cut(s)	331, 670, 939, 1178, 1673, 2249, 2885
Van91I	CCANNNNNTGG	3 cut(s)	260, 1976, 2434
Vha464I	CTTAAG	2 cut(s)	1883, 2312
VneI	GTGCAC	1 cut(s)	1323
VpaK11BI	GGWCC	4 cut(s)	1353, 1709, 1879, 2290
VspI	ATTAAT	2 cut(s)	2121, 2670
XagI	CCTNNNNNAGG	1 cut(s)	261
XapI	RAATTY	3 cut(s)	884, 2623, 2801
XceI	RCATGY	4 cut(s)	403, 758, 2202, 3084
XmiI	GTMKAC	2 cut(s)	1148, 1337
XmnI	GAANNNNTTC	2 cut(s)	44, 440
XspI	CTAG	7 cut(s)	62, 576, 588, 735, 879, 1359, 3066
ZraI	GACGTC	1 cut(s)	1790
Zsp2I	ATGCAT	3 cut(s)	2113, 2261, 3082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.