Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0003720

Physical Location & Seq

Genomic Coordinates Reverse (-)

50223894 .. 50225195

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0372600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGACCCGAAACCCTCCAACATCGCCGGACCTTCCATGCACGCTCCGGTTCTTCATCTTCATCCTCACCTTCGTTCTCAATACTGCTCGCCGCTCCAACGGCACAGTAAACCGCCCTTTTCTGAAAGTTTTCGACTCCAAGGCCTCTCCTTCAAACAAACGCGACGTCAAAACCACTGATGTAATGGTTGACCCCTCCCGCAATCTATGGTTCCGCCTCTTCGTCCCCACCACCACCACCACCACCACCACCACCACCACCAAACTCCCTGTGATAATATACTTCCATGGCGGCGGTTTCGTCTTCTTCTCTGCCAACTCAACCCTCTTCGAAGGCATCTGCAGACGACTCGCCCTGAACCTCCCTGCCATCGTCATCTCCGTCAACTACCGTCTCGCGCCGGAGTATCGTTACCCGTCAGCTTTCGAAGACGGATTCGACGTGCTGAAGTTTGTTGATACAGCAAACTTCGAGGGGTTTCCGAGTAACGCTGACCTCGGTAGGTGTTTCCTCGCCGGAGACAGCGCCGGCGGCAACATAGCGCACCACGTGGCTGTCATGGCGGGTGAGCACGAGTTTTTGAAGATGAAAGTGATTGGCATCATAGGGATACAACCGTTTTTTGGCGGGGAAGAAAGGACTGAATCGGATACCAAGCTTAAAAACGCGTTGATACTCTCTCTGGAGATAACTGACTGGTACTGGAAGGCGTTTTTGCCGGTCGGGGAGGACAGAGACCACCCTTTGGTTAATGTATTCGGTCCCCGATCGGATGCTGTTCTTGGGATAAACTTTCCGGCATCGATTGTTTTCGTTGCTGGGTTTGATCCATTGAAAGACTGGCAAAAGAGATACTGCGAGGGGTTGAAGAAAGCTGGAAAAGAAGTTTACATGGTCGAGTACCCGAATGCATTTCATGGATTTTACTGTTTTCCTCAGCTAAAGGAGTGGTCGTTATTAGTTGAGGAGGTGAAGGATTTCATTGAGAAGCAATCAGCTGCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

335

Amino Acids

37.69

Weight (kDa)

7.01

Isoelectric Point (pI)

42.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	73 - 133	4.7e-07	Carboxylesterase family
BD-FAE	PF20434	84 - 193	6.3e-11	BD-FAE
Abhydrolase_3	PF07859	92 - 309	1.9e-60	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003720)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07520 AT1G07520 AT1G07520 AT1G07520 AT2G29065
fragaria_vesca	FvH4_3g36662 FvH4_3g36662 FvH4_3g36662 FvH4_3g36670 FvH4_3g36680 FvH4_3g36680
malus_domestica	MD03G1089700.v1.1 MD11G1099000.v1.1
prunus_persica	Prupe.6G073900_v2.0.a1
pyrus_communis	pycom03g07130 pycom11g08320
rosa_chinensis	RchiOBHm_Chr5g0065571 RchiOBHm_Chr5g0065581
rosa_laevigata	RLG00000035798 RLG00000035799
rosa_multiflora	Rmu_sc0001010.1_g000052 Rmu_sc0035977.1_g000002
rosa_roxburghii	Rroxscaffold_1G00015640
rosa_rugosa	Rorug05G0372600 Rorug05G0372700
rosa_samantha	Rh5AG430700 Rh5AG430800 Rh5BG446800 Rh5BG446900 Rh5CG468700 Rh5CG468800 Rh5DG459300 Rh5DG459400
rosa_wichuraiana	Rw5G040410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	168
AccB7I	CCANNNNNTGG	1 cut(s)	745
AccBSI	CCGCTC	1 cut(s)	93
AccII	CGCG	3 cut(s)	162, 398, 668
AciI	CCGC	9 cut(s)	91, 112, 199, 214, 291, 294, 531, 563, 627
AclWI	GGATC	1 cut(s)	821
AcuI	CTGAAG	1 cut(s)	467
AcvI	CACGTG	1 cut(s)	550
AcyI	GRCGYC	1 cut(s)	165
AdeI	CACNNNGTG	1 cut(s)	550
AfaI	GTAC	2 cut(s)	701, 902
AfiI	CCNNNNNNNGG	2 cut(s)	623, 745
AflIII	ACRYGT	1 cut(s)	666
AgsI	TTSAA	4 cut(s)	153, 583, 835, 868
AjiI	CACGTC	1 cut(s)	442
AluBI	AGCT	5 cut(s)	422, 658, 875, 940, 998
AluI	AGCT	5 cut(s)	422, 658, 875, 940, 998
Alw21I	GWGCWC	1 cut(s)	573
Alw26I	GTCTC	3 cut(s)	398, 513, 729
AlwI	GGATC	1 cut(s)	821
AoxI	GGCC	1 cut(s)	141
ApeKI	GCWGC	1 cut(s)	998
ArsI	GACNNNNNNTTYG	2 cut(s)	150, 182
Asp700I	GAANNNNTTC	2 cut(s)	128, 977
AspLEI	GCGC	3 cut(s)	400, 527, 544
AspS9I	GGNCC	2 cut(s)	28, 761
AsuHPI	GGTGA	3 cut(s)	58, 578, 982
AsuII	TTCGAA	2 cut(s)	330, 426
AvaII	GGWCC	2 cut(s)	28, 761
BaeI	ACNNNNGTAYC	2 cut(s)	602, 635
BauI	CACGAG	1 cut(s)	572
BbrPI	CACGTG	1 cut(s)	550
BbsI	GAAGAC	2 cut(s)	295, 435
Bbv12I	GWGCWC	1 cut(s)	573
BbvCI	CCTCAGC	1 cut(s)	936
BbvI	GCAGC	1 cut(s)	985
BccI	CCATC	1 cut(s)	377
BceAI	ACGGC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	331, 365
BciVI	GTATCC	2 cut(s)	603, 643
BcoDI	GTCTC	3 cut(s)	398, 513, 729
BfmI	CTRYAG	1 cut(s)	340
BfoI	RGCGCY	1 cut(s)	528
BfuI	GTATCC	2 cut(s)	603, 643
BisI	GCNGC	4 cut(s)	91, 292, 532, 999
BlsI	GCNGC	4 cut(s)	92, 293, 533, 1000
Bme18I	GGWCC	2 cut(s)	28, 761
BmgBI	CACGTC	1 cut(s)	442
BmgT120I	GGNCC	2 cut(s)	28, 761
BmiI	GGNNCC	2 cut(s)	212, 763
BmsI	GCATC	4 cut(s)	345, 609, 763, 809
BpiI	GAAGAC	2 cut(s)	295, 435
BpmI	CTGGAG	1 cut(s)	704
Bpu10I	CCTNAGC	1 cut(s)	936
Bpu14I	TTCGAA	2 cut(s)	330, 426
Bsa29I	ATCGAT	1 cut(s)	803
BsaAI	YACGTR	1 cut(s)	550
BsaBI	GATNNNNATC	1 cut(s)	599
BsaHI	GRCGYC	1 cut(s)	165
BsaI	GGTCTC	1 cut(s)	729
BsaJI	CCNNGG	3 cut(s)	138, 286, 496
BsaWI	WCCGGW	1 cut(s)	45
BsaXI	ACNNNNNCTCC	2 cut(s)	938, 968
Bsc4I	CCNNNNNNNGG	2 cut(s)	623, 745
Bse118I	RCCGGY	2 cut(s)	527, 718
Bse1I	ACTGG	3 cut(s)	701, 707, 845
Bse8I	GATNNNNATC	1 cut(s)	599
BseCI	ATCGAT	1 cut(s)	803
BseDI	CCNNGG	3 cut(s)	138, 286, 496
BseGI	GGATG	2 cut(s)	60, 778
BseJI	GATNNNNATC	1 cut(s)	599
BseLI	CCNNNNNNNGG	2 cut(s)	623, 745
BseMII	CTCAG	1 cut(s)	950
BseNI	ACTGG	3 cut(s)	701, 707, 845
BseRI	GAGGAG	1 cut(s)	980
BseXI	GCAGC	1 cut(s)	985
BseYI	CCCAGC	1 cut(s)	818
Bsh1236I	CGCG	3 cut(s)	162, 398, 668
Bsh1285I	CGRYCG	2 cut(s)	723, 770
BshFI	GGCC	1 cut(s)	143
BshVI	ATCGAT	1 cut(s)	803
BsiEI	CGRYCG	2 cut(s)	723, 770
BsiHKAI	GWGCWC	1 cut(s)	573
BsiSI	CCGG	7 cut(s)	26, 46, 401, 516, 528, 719, 797
BslFI	GGGAC	2 cut(s)	209, 747
BslI	CCNNNNNNNGG	2 cut(s)	623, 745
BsmAI	GTCTC	3 cut(s)	398, 513, 729
BsmBI	CGTCTC	1 cut(s)	398
BsmFI	GGGAC	2 cut(s)	209, 747
BsmI	GAATGC	1 cut(s)	913
BsnI	GGCC	1 cut(s)	143
Bso31I	GGTCTC	1 cut(s)	729
Bsp119I	TTCGAA	2 cut(s)	330, 426
Bsp1286I	GDGCHC	1 cut(s)	573
Bsp143I	GATC	2 cut(s)	767, 826
Bsp19I	CCATGG	1 cut(s)	286
BspACI	CCGC	9 cut(s)	91, 112, 199, 214, 291, 294, 531, 563, 627
BspANI	GGCC	1 cut(s)	143
BspCNI	CTCAG	1 cut(s)	949
BspDI	ATCGAT	1 cut(s)	803
BspFNI	CGCG	3 cut(s)	162, 398, 668
BspLI	GGNNCC	2 cut(s)	212, 763
BspMAI	CTGCAG	1 cut(s)	344
BspPI	GGATC	1 cut(s)	821
BspT104I	TTCGAA	2 cut(s)	330, 426
BspTNI	GGTCTC	1 cut(s)	729
BsrBI	CCGCTC	1 cut(s)	93
BsrFI	RCCGGY	2 cut(s)	527, 718
BsrI	ACTGG	3 cut(s)	701, 707, 845
BssAI	RCCGGY	2 cut(s)	527, 718
BssECI	CCNNGG	3 cut(s)	138, 286, 496
BssMI	GATC	2 cut(s)	767, 826
BssNI	GRCGYC	1 cut(s)	165
BssSI	CACGAG	1 cut(s)	572
BssT1I	CCWWGG	2 cut(s)	138, 286
Bst2BI	CACGAG	1 cut(s)	572
Bst4CI	ACNGT	4 cut(s)	106, 392, 618, 929
Bst6I	CTCTTC	2 cut(s)	224, 332
BstACI	GRCGYC	1 cut(s)	165
BstBAI	YACGTR	1 cut(s)	550
BstBI	TTCGAA	2 cut(s)	330, 426
BstC8I	GCNNGC	3 cut(s)	41, 88, 529
BstDEI	CTNAG	2 cut(s)	936, 1002
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	2 cut(s)	60, 778
BstFNI	CGCG	3 cut(s)	162, 398, 668
BstH2I	RGCGCY	1 cut(s)	528
BstHHI	GCGC	3 cut(s)	400, 527, 544
BstKTI	GATC	2 cut(s)	770, 829
BstMAI	GTCTC	3 cut(s)	398, 513, 729
BstMBI	GATC	2 cut(s)	767, 826
BstMCI	CGRYCG	2 cut(s)	723, 770
BstMWI	GCNNNNNNNGC	3 cut(s)	99, 531, 560
BstSFI	CTRYAG	1 cut(s)	340
BstUI	CGCG	3 cut(s)	162, 398, 668
BstV1I	GCAGC	1 cut(s)	985
BstV2I	GAAGAC	2 cut(s)	295, 435
Bsu15I	ATCGAT	1 cut(s)	803
BsuI	GTATCC	2 cut(s)	603, 643
BsuRI	GGCC	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	803
BtgI	CCRYGG	1 cut(s)	286
BtgZI	GCGATG	1 cut(s)	6
BtrI	CACGTC	1 cut(s)	442
BtsCI	GGATG	2 cut(s)	60, 778
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	3 cut(s)	41, 88, 529
CfoI	GCGC	3 cut(s)	400, 527, 544
Cfr10I	RCCGGY	2 cut(s)	527, 718
Cfr13I	GGNCC	2 cut(s)	28, 761
ClaI	ATCGAT	1 cut(s)	803
Csp6I	GTAC	2 cut(s)	700, 901
CviAII	CATG	5 cut(s)	36, 287, 559, 892, 917
CviJI	RGCY	7 cut(s)	143, 422, 554, 658, 875, 940, 998
CviKI_1	RGCY	7 cut(s)	143, 422, 554, 658, 875, 940, 998
CviQI	GTAC	2 cut(s)	700, 901
DdeI	CTNAG	2 cut(s)	936, 1002
DpnI	GATC	2 cut(s)	769, 828
DpnII	GATC	2 cut(s)	767, 826
DraIII	CACNNNGTG	1 cut(s)	550
Eam1104I	CTCTTC	2 cut(s)	224, 332
EarI	CTCTTC	2 cut(s)	224, 332
EciI	GGCGGA	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	138, 286
Eco147I	AGGCCT	1 cut(s)	143
Eco31I	GGTCTC	1 cut(s)	729
Eco47I	GGWCC	2 cut(s)	28, 761
Eco57I	CTGAAG	1 cut(s)	467
Eco72I	CACGTG	1 cut(s)	550
EcoT14I	CCWWGG	2 cut(s)	138, 286
EcoT22I	ATGCAT	1 cut(s)	913
ErhI	CCWWGG	2 cut(s)	138, 286
Esp3I	CGTCTC	1 cut(s)	398
FaeI	CATG	5 cut(s)	39, 290, 562, 895, 920
FaiI	YATR	9 cut(s)	37, 208, 280, 288, 539, 560, 605, 893, 918
FaqI	GGGAC	2 cut(s)	209, 747
FatI	CATG	5 cut(s)	35, 286, 558, 891, 916
FauI	CCCGC	3 cut(s)	206, 556, 620
Fnu4HI	GCNGC	4 cut(s)	91, 292, 532, 999
FokI	GGATG	2 cut(s)	47, 785
Fsp4HI	GCNGC	4 cut(s)	91, 292, 532, 999
GlaI	GCGC	3 cut(s)	399, 526, 543
GluI	GCNGC	4 cut(s)	91, 292, 532, 999
GsaI	CCCAGC	1 cut(s)	822
GsuI	CTGGAG	1 cut(s)	704
HaeII	RGCGCY	1 cut(s)	528
HaeIII	GGCC	1 cut(s)	143
HapII	CCGG	7 cut(s)	26, 46, 401, 516, 528, 719, 797
HhaI	GCGC	3 cut(s)	400, 527, 544
Hin1I	GRCGYC	1 cut(s)	165
Hin1II	CATG	5 cut(s)	39, 290, 562, 895, 920
Hin6I	GCGC	3 cut(s)	398, 525, 542
HinP1I	GCGC	3 cut(s)	398, 525, 542
HincII	GTYRAC	2 cut(s)	190, 385
HindII	GTYRAC	2 cut(s)	190, 385
HindIII	AAGCTT	1 cut(s)	656
HinfI	GANTC	4 cut(s)	134, 348, 435, 644
HpaII	CCGG	7 cut(s)	26, 46, 401, 516, 528, 719, 797
HphI	GGTGA	3 cut(s)	58, 578, 982
Hpy166II	GTNNAC	4 cut(s)	109, 190, 385, 889
Hpy188I	TCNGA	4 cut(s)	123, 483, 649, 772
Hpy188III	TCNNGA	1 cut(s)	683
Hpy8I	GTNNAC	4 cut(s)	109, 190, 385, 889
Hpy99I	CGWCG	2 cut(s)	167, 443
HpyAV	CCTTC	6 cut(s)	41, 79, 159, 326, 700, 967
HpyCH4III	ACNGT	4 cut(s)	106, 392, 618, 929
HpyCH4IV	ACGT	3 cut(s)	165, 441, 549
HpyCH4V	TGCA	3 cut(s)	39, 342, 911
HpyF10VI	GCNNNNNNNGC	3 cut(s)	99, 531, 560
HpyF3I	CTNAG	2 cut(s)	936, 1002
HpySE526I	ACGT	3 cut(s)	165, 441, 549
Hsp92I	GRCGYC	1 cut(s)	165
Hsp92II	CATG	5 cut(s)	39, 290, 562, 895, 920
HspAI	GCGC	3 cut(s)	398, 525, 542
KroI	GCCGGC	1 cut(s)	527
KroNI	GCCGGC	1 cut(s)	529
Kzo9I	GATC	2 cut(s)	767, 826
LmnI	GCTCC	2 cut(s)	48, 98
Lsp1109I	GCAGC	1 cut(s)	985
LweI	GCATC	4 cut(s)	345, 609, 763, 809
MaeII	ACGT	3 cut(s)	165, 441, 549
MaeIII	GTNAC	2 cut(s)	410, 485
MalI	GATC	2 cut(s)	769, 828
MbiI	CCGCTC	1 cut(s)	93
MboI	GATC	2 cut(s)	767, 826
MhlI	GDGCHC	1 cut(s)	573
MluI	ACGCGT	1 cut(s)	666
MlyI	GAGTC	2 cut(s)	128, 342
MmeI	TCCRAC	2 cut(s)	41, 120
Mph1103I	ATGCAT	1 cut(s)	913
MreI	CGCCGGCG	1 cut(s)	527
MroNI	GCCGGC	1 cut(s)	527
MroXI	GAANNNNTTC	2 cut(s)	128, 977
MseI	TTAA	2 cut(s)	660, 750
MspA1I	CMGCKG	1 cut(s)	998
MspI	CCGG	7 cut(s)	26, 46, 401, 516, 528, 719, 797
Mva1269I	GAATGC	1 cut(s)	913
MvnI	CGCG	3 cut(s)	162, 398, 668
MwoI	GCNNNNNNNGC	3 cut(s)	99, 531, 560
NaeI	GCCGGC	1 cut(s)	529
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	2 cut(s)	767, 826
NgoMIV	GCCGGC	1 cut(s)	527
NlaIII	CATG	5 cut(s)	39, 290, 562, 895, 920
NlaIV	GGNNCC	2 cut(s)	212, 763
NsiI	ATGCAT	1 cut(s)	913
NspV	TTCGAA	2 cut(s)	330, 426
PceI	AGGCCT	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	2 cut(s)	378, 438
PctI	GAATGC	1 cut(s)	913
PdiI	GCCGGC	1 cut(s)	529
PdmI	GAANNNNTTC	2 cut(s)	128, 977
PfeI	GAWTC	2 cut(s)	435, 644
PflMI	CCANNNNNTGG	1 cut(s)	745
PkrI	GCNGC	4 cut(s)	92, 293, 533, 1000
Ple19I	CGATCG	1 cut(s)	770
PleI	GAGTC	2 cut(s)	128, 342
PmaCI	CACGTG	1 cut(s)	550
PmlI	CACGTG	1 cut(s)	550
PpsI	GAGTC	2 cut(s)	128, 342
Ppu21I	YACGTR	1 cut(s)	550
PspCI	CACGTG	1 cut(s)	550
PspFI	CCCAGC	1 cut(s)	818
PspN4I	GGNNCC	2 cut(s)	212, 763
PspPI	GGNCC	2 cut(s)	28, 761
PstI	CTGCAG	1 cut(s)	344
PvuI	CGATCG	1 cut(s)	770
PvuII	CAGCTG	1 cut(s)	998
RsaI	GTAC	2 cut(s)	701, 902
RsaNI	GTAC	2 cut(s)	700, 901
SaqAI	TTAA	2 cut(s)	660, 750
SatI	GCNGC	4 cut(s)	91, 292, 532, 999
Sau3AI	GATC	2 cut(s)	767, 826
Sau96I	GGNCC	2 cut(s)	28, 761
SchI	GAGTC	2 cut(s)	128, 342
SduI	GDGCHC	1 cut(s)	573
SfaNI	GCATC	4 cut(s)	345, 609, 763, 809
SfcI	CTRYAG	1 cut(s)	340
SfuI	TTCGAA	2 cut(s)	330, 426
SgrAI	CRCCGGYG	1 cut(s)	527
SinI	GGWCC	2 cut(s)	28, 761
SseBI	AGGCCT	1 cut(s)	143
SsiI	CCGC	9 cut(s)	91, 112, 199, 214, 291, 294, 531, 563, 627
StuI	AGGCCT	1 cut(s)	143
StyI	CCWWGG	2 cut(s)	138, 286
TaaI	ACNGT	4 cut(s)	106, 392, 618, 929
TaiI	ACGT	3 cut(s)	168, 444, 552
TaqI	TCGA	7 cut(s)	132, 330, 426, 438, 471, 803, 897
TaqII	GACCGA	1 cut(s)	749
TauI	GCSGC	3 cut(s)	93, 294, 534
TfiI	GAWTC	2 cut(s)	435, 644
Tru1I	TTAA	2 cut(s)	660, 750
Tru9I	TTAA	2 cut(s)	660, 750
TscAI	CASTG	1 cut(s)	181
TseI	GCWGC	1 cut(s)	998
TspDTI	ATGAA	5 cut(s)	43, 49, 602, 905, 970
TspGWI	ACGGA	2 cut(s)	370, 447
TspRI	CASTG	1 cut(s)	181
Van91I	CCANNNNNTGG	1 cut(s)	745
VpaK11BI	GGWCC	2 cut(s)	28, 761
XcmI	CCANNNNNNNNNTGG	2 cut(s)	181, 837
XmnI	GAANNNNTTC	2 cut(s)	128, 977
ZraI	GACGTC	1 cut(s)	166
Zsp2I	ATGCAT	1 cut(s)	913

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.