Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008935

Physical Location & Seq

Genomic Coordinates Reverse (-)

12643917 .. 12646057

Gene Structure 2141 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G29550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1350 bp

ATGCGTGAGATTCTTCATATTCAAGGAGGTCAATGCGGAAACCAAATCGGTTCCAAGTTTTGGGAAGTGGTTAATCTCGAGCACGGGATTGATCAGACGGGACGGTATGTAGGAGATTCCGAGTTACAGCTTGAGAGGGTTAATGTATACTACAACGAGGCGAGTTGTGGAAGGTACGTTCCTCGCGCTGTTCTCATGGATTTGGAGCCTGGAACCATGGACAGTGTCAGATCTGGTCCGTACGGTCAGATCTTTCGACCGGATAACTTCGTCTTCGGTCAGTCCGGTGCTGGGAATAACTGGGCTAAAGGTCACTACACTGAAGGTGCTGAGCTTATTGATTCGGTCCTTGATGTTGTTCGCAAAGAGGCTGAGAACTGTGACTGCCTTCAAGGATTTCAGGTGTGCCATTCCTTGGGAGGAGGAACTGGTTCTGGAATGGGAACTTTGTTGATATCTAAGATCAGGGAGGAGTACCCAGACCGTATGATGATGACTTTCTCTGTGTTCCCATCGCCTAAGGTGTCTGACACTGTTGTGGAGCCTTACAACGCAACACTATCTGTGCACCAGCTTGTTGAGAACGCTGATGAGTGTATGGTTCTTGACAACGAAGCTTTGTATGACATTTGCTTCCGTACACTCAAGCTTAGCACTCCAAGTTTTGGTGATCTGAACCACTTGATCTCTGCAACCATGTCTGGTGTAACCTGCTGTCTTAGGTTCCCTGGTCAACTGAACTCTGATCTGCGAAAGCTAGCTGTGAATCTGATCCCATTCCCTCGTCTCCACTTCTTCATGGTGGGATTTGCTCCTCTCACCTCTCGTGGATCTCAGCAGTACCGTAACCTCACTGTCCCAGAGCTCACTCAGCAAATGTGGGATGCTAAGAACATGATGTGTGCTGCTGACCCAAGACACGGTCGCTACCTCACTGCTTCAGCCATGTTCCGTGGAAAGATGAGCACCAAGGAGGTCGATGAACAGATGCTGAACGTACAGAACAAGAACTCCTCCTACTTTGTGGAATGGATCCCTAACAACGTCAAATCAACCGTCTGTGACATTCCCCCTACTGGTCTGAAGATGGCTTCAACGTTCATTGGTAACTCAACTTCGATCCAAGAGATGTTCAGGCGTGTCAGTGAGCAATTCACTGCTATGTTCAGGAGAAAGGCTTTCTTGCATTGGTACACAGGTGAAGGTATGGATGAGATGGAGTTCACTGAAGCTGAAAGCAACATGAACGATCTTGTCTCTGAGTATCAGCAGTATCAAGATGCAACGGCTGATGAAGAAGGAGAATATGAAGAGGAAGAAGCTGAGTACGAGCAAGAAGAAACTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0005829 GO:0005856 GO:0005886 GO:0005911 GO:0006950 GO:0006970 GO:0006996 GO:0007010 GO:0007017 GO:0008150 GO:0009506 GO:0009628 GO:0009651 GO:0009987 GO:0010035 GO:0010038 GO:0012505 GO:0016020 GO:0016043 GO:0030054 GO:0030312 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045298 GO:0046686 GO:0050896 GO:0055044 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04145 ko04540 ko05130 map04145 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

449

Amino Acids

50.75

Weight (kDa)

4.74

Isoelectric Point (pI)

38.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tubulin	PF00091	3 - 211	5.2e-64	Tubulin/FtsZ family, GTPase domain
Tubulin_C	PF03953	261 - 382	8.9e-41	Tubulin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29550
fragaria_vesca	FvH4_3g37460
malus_domestica	MD03G1080000.v1.1 MD11G1084600.v1.1
prunus_persica	Prupe.1G039800_v2.0.a1 Prupe.6G064900_v2.0.a1
pyrus_communis	pycom03g06400
rosa_chinensis	RchiOBHm_Chr2g0121521 RchiOBHm_Chr5g0067351
rosa_laevigata	RLG00000035929
rosa_multiflora	Rmu_sc0000079.1_g000002 Rmu_sc0028950.1_g000001 Rmu_ssc0000354.1_g000004
rosa_roxburghii	Rroxscaffold_1G00013030 Rroxscaffold_1G00013730
rosa_rugosa	Rorug01G0335100 Rorug05G0268700 Rorug05G0268700 Rorug05G0384400 Rorug06G0249000
rosa_samantha	Rh5AG443900
rosa_wichuraiana	Rw5G041460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	719
AccB7I	CCANNNNNTGG	3 cut(s)	60, 415, 665
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	186
AciI	CCGC	1 cut(s)	36
AclI	AACGTT	1 cut(s)	1097
AclWI	GGATC	5 cut(s)	766, 838, 1027, 1040, 1114
AcuI	CTGAAG	4 cut(s)	342, 924, 1103, 1248
AfaI	GTAC	8 cut(s)	176, 242, 476, 640, 842, 999, 1193, 1328
AfiI	CCNNNNNNNGG	6 cut(s)	60, 291, 415, 665, 920, 1076
AgsI	TTSAA	3 cut(s)	23, 392, 1095
AjnI	CCWGG	2 cut(s)	208, 727
AleI	CACNNNNGTG	1 cut(s)	536
AloI	GAACNNNNNNTCC	4 cut(s)	162, 194, 995, 1027
Alw21I	GWGCWC	4 cut(s)	84, 570, 867, 968
Alw26I	GTCTC	2 cut(s)	791, 1261
Alw44I	GTGCAC	1 cut(s)	566
AlwI	GGATC	5 cut(s)	766, 838, 1027, 1040, 1114
AlwNI	CAGNNNCTG	1 cut(s)	991
Ama87I	CYCGRG	1 cut(s)	77
ApaLI	GTGCAC	1 cut(s)	566
ApeKI	GCWGC	1 cut(s)	905
ArsI	GACNNNNNNTTYG	2 cut(s)	1041, 1073
Asp700I	GAANNNNTTC	1 cut(s)	430
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	236, 346
AsuHPI	GGTGA	3 cut(s)	680, 811, 1211
AsuNHI	GCTAGC	1 cut(s)	757
AvaI	CYCGRG	1 cut(s)	77
AvaII	GGWCC	2 cut(s)	236, 346
AxyI	CCTNAGG	1 cut(s)	519
BaeGI	GKGCMC	1 cut(s)	570
BaeI	ACNNNNGTAYC	2 cut(s)	1183, 1216
BamHI	GGATCC	1 cut(s)	1032
BanII	GRGCYC	1 cut(s)	867
BarI	GAAGNNNNNNTAC	2 cut(s)	1099, 1131
BauI	CACGAG	1 cut(s)	825
BbsI	GAAGAC	1 cut(s)	265
Bbv12I	GWGCWC	4 cut(s)	84, 570, 867, 968
BbvI	GCAGC	1 cut(s)	892
BccI	CCATC	3 cut(s)	520, 1081, 1210
BceAI	ACGGC	1 cut(s)	1302
BciT130I	CCWGG	2 cut(s)	210, 729
BclI	TGATCA	1 cut(s)	91
BcoDI	GTCTC	2 cut(s)	791, 1261
BfaI	CTAG	1 cut(s)	758
BfuAI	ACCTGC	1 cut(s)	719
BglII	AGATCT	2 cut(s)	230, 249
BisI	GCNGC	1 cut(s)	906
BlpI	GCTNAGC	2 cut(s)	330, 650
BlsI	GCNGC	1 cut(s)	907
Bme1390I	CCNGG	2 cut(s)	210, 729
Bme18I	GGWCC	2 cut(s)	236, 346
BmeT110I	CYCGRG	1 cut(s)	77
BmgT120I	GGNCC	2 cut(s)	236, 346
BmiI	GGNNCC	6 cut(s)	52, 207, 214, 543, 725, 1034
BmrFI	CCNGG	2 cut(s)	210, 729
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	3 cut(s)	874, 978, 1270
BmtI	GCTAGC	1 cut(s)	761
BmuI	ACTGGG	1 cut(s)	310
BpiI	GAAGAC	1 cut(s)	265
Bpu1102I	GCTNAGC	2 cut(s)	330, 650
BpuEI	CTTGAG	2 cut(s)	152, 629
BsaJI	CCNNGG	5 cut(s)	216, 414, 727, 952, 969
BsaWI	WCCGGW	2 cut(s)	259, 284
BsaXI	ACNNNNNCTCC	2 cut(s)	995, 1025
Bsc4I	CCNNNNNNNGG	6 cut(s)	60, 291, 415, 665, 920, 1076
Bse1I	ACTGG	3 cut(s)	305, 433, 1081
Bse21I	CCTNAGG	1 cut(s)	519
BseBI	CCWGG	2 cut(s)	210, 729
BseDI	CCNNGG	5 cut(s)	216, 414, 727, 952, 969
BseGI	GGATG	2 cut(s)	889, 1216
BseLI	CCNNNNNNNGG	6 cut(s)	60, 291, 415, 665, 920, 1076
BseMII	CTCAG	6 cut(s)	321, 363, 848, 884, 1251, 1314
BseNI	ACTGG	3 cut(s)	305, 433, 1081
BseRI	GAGGAG	4 cut(s)	435, 485, 804, 1003
BseSI	GKGCMC	1 cut(s)	570
BseXI	GCAGC	1 cut(s)	892
BseYI	CCCAGC	1 cut(s)	290
Bsh1236I	CGCG	1 cut(s)	186
Bsh1285I	CGRYCG	2 cut(s)	260, 925
BsiEI	CGRYCG	2 cut(s)	260, 925
BsiHKAI	GWGCWC	4 cut(s)	84, 570, 867, 968
BsiHKCI	CYCGRG	1 cut(s)	77
BsiSI	CCGG	2 cut(s)	260, 285
BsiWI	CGTACG	1 cut(s)	240
BslFI	GGGAC	2 cut(s)	114, 842
BslI	CCNNNNNNNGG	6 cut(s)	60, 291, 415, 665, 920, 1076
BsmAI	GTCTC	2 cut(s)	791, 1261
BsmBI	CGTCTC	1 cut(s)	791
BsmFI	GGGAC	2 cut(s)	114, 842
BsoBI	CYCGRG	1 cut(s)	77
Bsp1286I	GDGCHC	4 cut(s)	84, 570, 867, 968
Bsp1720I	GCTNAGC	2 cut(s)	330, 650
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	1 cut(s)	36
BspCNI	CTCAG	6 cut(s)	322, 364, 847, 883, 1252, 1315
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	6 cut(s)	52, 207, 214, 543, 725, 1034
BspMI	ACCTGC	1 cut(s)	719
BspOI	GCTAGC	1 cut(s)	761
BspPI	GGATC	5 cut(s)	766, 838, 1027, 1040, 1114
BsrI	ACTGG	3 cut(s)	305, 433, 1081
BssECI	CCNNGG	5 cut(s)	216, 414, 727, 952, 969
BssNAI	GTATAC	1 cut(s)	148
BssSI	CACGAG	1 cut(s)	825
BssT1I	CCWWGG	3 cut(s)	216, 414, 969
Bst1107I	GTATAC	1 cut(s)	148
Bst2BI	CACGAG	1 cut(s)	825
Bst2UI	CCWGG	2 cut(s)	210, 729
Bst6I	CTCTTC	1 cut(s)	1305
BstC8I	GCNNGC	1 cut(s)	759
BstDSI	CCRYGG	2 cut(s)	216, 952
BstF5I	GGATG	2 cut(s)	889, 1216
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	188
BstMAI	GTCTC	2 cut(s)	791, 1261
BstMCI	CGRYCG	2 cut(s)	260, 925
BstMWI	GCNNNNNNNGC	1 cut(s)	871
BstNI	CCWGG	2 cut(s)	210, 729
BstSCI	CCNGG	2 cut(s)	208, 727
BstSLI	GKGCMC	1 cut(s)	570
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	1 cut(s)	892
BstV2I	GAAGAC	1 cut(s)	265
BstX2I	RGATCY	4 cut(s)	230, 249, 830, 1032
BstYI	RGATCY	4 cut(s)	230, 249, 830, 1032
BstZ17I	GTATAC	1 cut(s)	148
Bsu36I	CCTNAGG	1 cut(s)	519
BtgI	CCRYGG	2 cut(s)	216, 952
BtgZI	GCGATG	1 cut(s)	498
BtsCI	GGATG	2 cut(s)	889, 1216
BtsI	GCAGTG	2 cut(s)	933, 1155
BtsIMutI	CAGTG	8 cut(s)	229, 318, 531, 852, 933, 1150, 1155, 1224
BveI	ACCTGC	1 cut(s)	719
Cac8I	GCNNGC	1 cut(s)	759
CaiI	CAGNNNCTG	1 cut(s)	991
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	236, 346
Csp6I	GTAC	8 cut(s)	175, 241, 475, 639, 841, 998, 1192, 1327
CviAII	CATG	7 cut(s)	196, 217, 697, 799, 895, 946, 1243
CviQI	GTAC	8 cut(s)	175, 241, 475, 639, 841, 998, 1192, 1327
Eam1104I	CTCTTC	1 cut(s)	1305
EarI	CTCTTC	1 cut(s)	1305
Ecl136II	GAGCTC	1 cut(s)	865
Eco130I	CCWWGG	3 cut(s)	216, 414, 969
Eco24I	GRGCYC	1 cut(s)	867
Eco32I	GATATC	1 cut(s)	456
Eco47I	GGWCC	2 cut(s)	236, 346
Eco53kI	GAGCTC	1 cut(s)	865
Eco57I	CTGAAG	4 cut(s)	342, 924, 1103, 1248
Eco81I	CCTNAGG	1 cut(s)	519
Eco88I	CYCGRG	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	865
EcoRII	CCWGG	2 cut(s)	208, 727
EcoRV	GATATC	1 cut(s)	456
EcoT14I	CCWWGG	3 cut(s)	216, 414, 969
EcoT38I	GRGCYC	1 cut(s)	867
ErhI	CCWWGG	3 cut(s)	216, 414, 969
Esp3I	CGTCTC	1 cut(s)	791
FaeI	CATG	7 cut(s)	199, 220, 700, 802, 898, 949, 1246
FalI	AAGNNNNNCTT	2 cut(s)	1166, 1198
FaqI	GGGAC	2 cut(s)	114, 842
FatI	CATG	7 cut(s)	195, 216, 696, 798, 894, 945, 1242
FbaI	TGATCA	1 cut(s)	91
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	906
FokI	GGATG	2 cut(s)	896, 1223
FriOI	GRGCYC	1 cut(s)	867
Fsp4HI	GCNGC	1 cut(s)	906
FspBI	CTAG	1 cut(s)	758
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	1 cut(s)	906
GsaI	CCCAGC	1 cut(s)	294
HapII	CCGG	2 cut(s)	260, 285
HhaI	GCGC	1 cut(s)	188
Hin1II	CATG	7 cut(s)	199, 220, 700, 802, 898, 949, 1246
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HincII	GTYRAC	1 cut(s)	734
HindII	GTYRAC	1 cut(s)	734
HindIII	AAGCTT	2 cut(s)	615, 647
HinfI	GANTC	4 cut(s)	10, 116, 341, 766
HpaII	CCGG	2 cut(s)	260, 285
HphI	GGTGA	3 cut(s)	680, 811, 1211
Hpy166II	GTNNAC	6 cut(s)	148, 568, 641, 734, 1194, 1224
Hpy188III	TCNNGA	5 cut(s)	77, 435, 605, 1168, 1277
Hpy8I	GTNNAC	6 cut(s)	148, 568, 641, 734, 1194, 1224
HpyAV	CCTTC	5 cut(s)	165, 317, 398, 1196, 1292
HpyCH4IV	ACGT	4 cut(s)	177, 996, 1044, 1097
HpyCH4V	TGCA	4 cut(s)	568, 692, 1186, 1283
HpyF10VI	GCNNNNNNNGC	1 cut(s)	871
HpySE526I	ACGT	4 cut(s)	177, 996, 1044, 1097
Hsp92II	CATG	7 cut(s)	199, 220, 700, 802, 898, 949, 1246
HspAI	GCGC	1 cut(s)	186
Ksp22I	TGATCA	1 cut(s)	91
LmnI	GCTCC	3 cut(s)	205, 541, 817
Lsp1109I	GCAGC	1 cut(s)	892
LweI	GCATC	3 cut(s)	874, 978, 1270
MaeI	CTAG	1 cut(s)	758
MaeII	ACGT	4 cut(s)	177, 996, 1044, 1097
MaeIII	GTNAC	7 cut(s)	123, 311, 380, 706, 845, 1061, 1106
MboII	GAAGA	8 cut(s)	5, 265, 787, 1096, 1307, 1322, 1328, 1349
MflI	RGATCY	4 cut(s)	230, 249, 830, 1032
MhlI	GDGCHC	4 cut(s)	84, 570, 867, 968
MluCI	AATT	1 cut(s)	1151
MroXI	GAANNNNTTC	1 cut(s)	430
MseI	TTAA	2 cut(s)	72, 141
MslI	CAYNNNNRTG	2 cut(s)	536, 1160
MspI	CCGG	2 cut(s)	260, 285
MspR9I	CCNGG	2 cut(s)	210, 729
MvaI	CCWGG	2 cut(s)	210, 729
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	871
NcoI	CCATGG	1 cut(s)	216
NheI	GCTAGC	1 cut(s)	757
NlaIII	CATG	7 cut(s)	199, 220, 700, 802, 898, 949, 1246
NlaIV	GGNNCC	6 cut(s)	52, 207, 214, 543, 725, 1034
NmuCI	GTSAC	3 cut(s)	311, 380, 1061
OliI	CACNNNNGTG	1 cut(s)	536
PaeR7I	CTCGAG	1 cut(s)	77
PdmI	GAANNNNTTC	1 cut(s)	430
PfeI	GAWTC	4 cut(s)	10, 116, 341, 766
Pfl23II	CGTACG	1 cut(s)	240
PflFI	GACNNNGTC	2 cut(s)	224, 921
PflMI	CCANNNNNTGG	3 cut(s)	60, 415, 665
PkrI	GCNGC	1 cut(s)	907
Psp124BI	GAGCTC	1 cut(s)	867
Psp1406I	AACGTT	1 cut(s)	1097
Psp6I	CCWGG	2 cut(s)	208, 727
PspFI	CCCAGC	1 cut(s)	290
PspGI	CCWGG	2 cut(s)	208, 727
PspLI	CGTACG	1 cut(s)	240
PspN4I	GGNNCC	6 cut(s)	52, 207, 214, 543, 725, 1034
PspPI	GGNCC	2 cut(s)	236, 346
PsrI	GAACNNNNNNTAC	2 cut(s)	1001, 1033
PstNI	CAGNNNCTG	1 cut(s)	991
PsuI	RGATCY	4 cut(s)	230, 249, 830, 1032
PsyI	GACNNNGTC	2 cut(s)	224, 921
RsaI	GTAC	8 cut(s)	176, 242, 476, 640, 842, 999, 1193, 1328
RsaNI	GTAC	8 cut(s)	175, 241, 475, 639, 841, 998, 1192, 1327
RseI	CAYNNNNRTG	2 cut(s)	536, 1160
SacI	GAGCTC	1 cut(s)	867
SaqAI	TTAA	2 cut(s)	72, 141
SatI	GCNGC	1 cut(s)	906
Sau96I	GGNCC	2 cut(s)	236, 346
ScrFI	CCNGG	2 cut(s)	210, 729
SduI	GDGCHC	4 cut(s)	84, 570, 867, 968
SfaNI	GCATC	3 cut(s)	874, 978, 1270
Sfr274I	CTCGAG	1 cut(s)	77
SinI	GGWCC	2 cut(s)	236, 346
SlaI	CTCGAG	1 cut(s)	77
SmiMI	CAYNNNNRTG	2 cut(s)	536, 1160
SmlI	CTYRAG	3 cut(s)	77, 131, 644
SmoI	CTYRAG	3 cut(s)	77, 131, 644
Sse9I	AATT	1 cut(s)	1151
SsiI	CCGC	1 cut(s)	36
SspMI	CTAG	1 cut(s)	758
SstI	GAGCTC	1 cut(s)	867
StyD4I	CCNGG	2 cut(s)	208, 727
StyI	CCWWGG	3 cut(s)	216, 414, 969
TaiI	ACGT	4 cut(s)	180, 999, 1047, 1100
TaqI	TCGA	4 cut(s)	78, 256, 978, 1118
TaqII	GACCGA	2 cut(s)	266, 334
TasI	AATT	1 cut(s)	1151
TfiI	GAWTC	4 cut(s)	10, 116, 341, 766
Tru1I	TTAA	2 cut(s)	72, 141
Tru9I	TTAA	2 cut(s)	72, 141
TscAI	CASTG	8 cut(s)	229, 325, 538, 859, 940, 1150, 1162, 1231
TseFI	GTSAC	3 cut(s)	311, 380, 1061
TseI	GCWGC	1 cut(s)	905
Tsp45I	GTSAC	3 cut(s)	311, 380, 1061
TspDTI	ATGAA	7 cut(s)	5, 787, 996, 1090, 1259, 1308, 1323
TspGWI	ACGGA	3 cut(s)	228, 626, 941
TspRI	CASTG	8 cut(s)	229, 325, 538, 859, 940, 1150, 1162, 1231
Tth111I	GACNNNGTC	2 cut(s)	224, 921
Van91I	CCANNNNNTGG	3 cut(s)	60, 415, 665
VneI	GTGCAC	1 cut(s)	566
VpaK11BI	GGWCC	2 cut(s)	236, 346
XhoI	CTCGAG	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	147
XmnI	GAANNNNTTC	1 cut(s)	430
XspI	CTAG	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.