Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000079.1

Orthogroup ID

OG0008935

Physical Location & Seq

Genomic Coordinates Reverse (-)

5649 .. 7969

Gene Structure 2321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000079.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ctgccatctgatcatgctccagattcactgagcacagctgatcttcaacccttgatcctccactccacacacaaaatcgtccctcaaggcgggtatgaggatgatcaagaggaggaggagattccaaaaccacgaaggatcggccgatacgtcgccggaaaagtgaactttcgaccgggtcccgatcgcgtcgactgtagttgctccgatcttcattattcgtcaccggaggtggccggaagtgagagaaccagtcgggtcgggtcaccgggtttgggtcggagggttaacgtcgtctactataatgaagcaagcggcgggaggggtgttccactcaccgtcctcatggatttggagcctgggaccgtggacagcgtcagatctggacagatcttccgtcccgataactttgtcttcaatcaatctgatgctagaaacaactgggcgaaaggtcactacaccgaggtggctgatttgatcgattcagttctcgatgtgatgctaacagaggtggagaactgtgactgcttgcaagggttccaggtatgccattcttgggtggtggtgctagatctggaatgggaacacttatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04145 ko04540 ko05130 map04145 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

197

Amino Acids

21.86

Weight (kDa)

4.76

Isoelectric Point (pI)

53.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29550
fragaria_vesca	FvH4_3g37460
malus_domestica	MD03G1080000.v1.1 MD11G1084600.v1.1
prunus_persica	Prupe.1G039800_v2.0.a1 Prupe.6G064900_v2.0.a1
pyrus_communis	pycom03g06400
rosa_chinensis	RchiOBHm_Chr2g0121521 RchiOBHm_Chr5g0067351
rosa_laevigata	RLG00000035929
rosa_multiflora	Rmu_sc0000079.1_g000002 Rmu_sc0028950.1_g000001 Rmu_ssc0000354.1_g000004
rosa_roxburghii	Rroxscaffold_1G00013030 Rroxscaffold_1G00013730
rosa_rugosa	Rorug01G0335100 Rorug05G0268700 Rorug05G0268700 Rorug05G0384400 Rorug06G0249000
rosa_samantha	Rh5AG443900
rosa_wichuraiana	Rw5G041460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	192, 297
AccII	CGCG	1 cut(s)	189
AciI	CCGC	3 cut(s)	90, 315, 318
AclWI	GGATC	2 cut(s)	49, 146
AcoI	YGGCCR	2 cut(s)	142, 234
AfiI	CCNNNNNNNGG	3 cut(s)	89, 275, 556
AgsI	TTSAA	2 cut(s)	47, 418
AjnI	CCWGG	2 cut(s)	358, 540
AleI	CACNNNNGTG	1 cut(s)	464
AluBI	AGCT	1 cut(s)	38
AluI	AGCT	1 cut(s)	38
Alw21I	GWGCWC	1 cut(s)	35
AlwI	GGATC	2 cut(s)	49, 146
AoxI	GGCC	2 cut(s)	142, 234
AspS9I	GGNCC	2 cut(s)	179, 363
AsuC2I	CCSGG	2 cut(s)	177, 270
AsuHPI	GGTGA	3 cut(s)	216, 258, 328
AvaII	GGWCC	2 cut(s)	179, 363
BbsI	GAAGAC	1 cut(s)	406
Bbv12I	GWGCWC	1 cut(s)	35
BccI	CCATC	1 cut(s)	13
BciT130I	CCWGG	2 cut(s)	360, 542
BclI	TGATCA	2 cut(s)	10, 103
BcnI	CCSGG	2 cut(s)	177, 270
BfaI	CTAG	2 cut(s)	432, 569
BfmI	CTRYAG	1 cut(s)	196
BglII	AGATCT	3 cut(s)	380, 390, 571
BisI	GCNGC	1 cut(s)	316
BlsI	GCNGC	1 cut(s)	317
Bme1390I	CCNGG	4 cut(s)	177, 270, 360, 542
Bme18I	GGWCC	2 cut(s)	179, 363
BmgT120I	GGNCC	2 cut(s)	179, 363
BmiI	GGNNCC	5 cut(s)	180, 181, 357, 364, 539
BmrFI	CCNGG	4 cut(s)	177, 270, 360, 542
BmrI	ACTGGG	1 cut(s)	451
BmsI	GCATC	2 cut(s)	418, 489
BmuI	ACTGGG	1 cut(s)	451
BpiI	GAAGAC	1 cut(s)	406
BpuEI	CTTGAG	1 cut(s)	69
BpuMI	CCSGG	2 cut(s)	177, 270
Bsa29I	ATCGAT	1 cut(s)	480
BsaJI	CCNNGG	3 cut(s)	359, 366, 462
BsaWI	WCCGGW	1 cut(s)	226
Bsc4I	CCNNNNNNNGG	3 cut(s)	89, 275, 556
Bse1I	ACTGG	2 cut(s)	252, 446
BseBI	CCWGG	2 cut(s)	360, 542
BseCI	ATCGAT	1 cut(s)	480
BseDI	CCNNGG	3 cut(s)	359, 366, 462
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	3 cut(s)	89, 275, 556
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	2 cut(s)	252, 446
BseRI	GAGGAG	3 cut(s)	125, 128, 131
BseX3I	CGGCCG	1 cut(s)	142
Bsh1236I	CGCG	1 cut(s)	189
Bsh1285I	CGRYCG	3 cut(s)	145, 176, 187
BshFI	GGCC	2 cut(s)	144, 236
BshVI	ATCGAT	1 cut(s)	480
BsiEI	CGRYCG	3 cut(s)	145, 176, 187
BsiHKAI	GWGCWC	1 cut(s)	35
BsiSI	CCGG	5 cut(s)	156, 176, 227, 237, 269
BslFI	GGGAC	4 cut(s)	65, 165, 376, 384
BslI	CCNNNNNNNGG	3 cut(s)	89, 275, 556
BsmFI	GGGAC	4 cut(s)	65, 165, 376, 384
BsnI	GGCC	2 cut(s)	144, 236
Bsp1286I	GDGCHC	1 cut(s)	35
BspACI	CCGC	3 cut(s)	90, 315, 318
BspANI	GGCC	2 cut(s)	144, 236
BspCNI	CTCAG	1 cut(s)	21
BspDI	ATCGAT	1 cut(s)	480
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	5 cut(s)	180, 181, 357, 364, 539
BspPI	GGATC	2 cut(s)	49, 146
BsrI	ACTGG	2 cut(s)	252, 446
BssECI	CCNNGG	3 cut(s)	359, 366, 462
Bst2UI	CCWGG	2 cut(s)	360, 542
Bst4CI	ACNGT	4 cut(s)	197, 340, 367, 521
BstC8I	GCNNGC	2 cut(s)	313, 530
BstDEI	CTNAG	1 cut(s)	29
BstDSI	CCRYGG	1 cut(s)	366
BstEII	GGTNACC	1 cut(s)	264
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	1 cut(s)	189
BstMCI	CGRYCG	3 cut(s)	145, 176, 187
BstNI	CCWGG	2 cut(s)	360, 542
BstPI	GGTNACC	1 cut(s)	264
BstSCI	CCNGG	4 cut(s)	175, 268, 358, 540
BstSFI	CTRYAG	1 cut(s)	196
BstUI	CGCG	1 cut(s)	189
BstV2I	GAAGAC	1 cut(s)	406
BstX2I	RGATCY	3 cut(s)	380, 390, 571
BstYI	RGATCY	3 cut(s)	380, 390, 571
BstZI	CGGCCG	1 cut(s)	142
Bsu15I	ATCGAT	1 cut(s)	480
BsuRI	GGCC	2 cut(s)	144, 236
BsuTUI	ATCGAT	1 cut(s)	480
BtgI	CCRYGG	1 cut(s)	366
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	26
Cac8I	GCNNGC	2 cut(s)	313, 530
Cfr13I	GGNCC	2 cut(s)	179, 363
ClaI	ATCGAT	1 cut(s)	480
CseI	GACGC	2 cut(s)	178, 364
CviAII	CATG	2 cut(s)	14, 346
CviJI	RGCY	5 cut(s)	38, 144, 236, 358, 470
CviKI_1	RGCY	5 cut(s)	38, 144, 236, 358, 470
DdeI	CTNAG	1 cut(s)	29
EaeI	YGGCCR	2 cut(s)	142, 234
EagI	CGGCCG	1 cut(s)	142
EclXI	CGGCCG	1 cut(s)	142
Eco47I	GGWCC	2 cut(s)	179, 363
Eco52I	CGGCCG	1 cut(s)	142
Eco91I	GGTNACC	1 cut(s)	264
EcoO109I	RGGNCCY	1 cut(s)	179
EcoO65I	GGTNACC	1 cut(s)	264
EcoRII	CCWGG	2 cut(s)	358, 540
FaeI	CATG	2 cut(s)	17, 349
FaiI	YATR	6 cut(s)	15, 96, 303, 347, 547, 592
FaqI	GGGAC	4 cut(s)	65, 165, 376, 384
FatI	CATG	2 cut(s)	13, 345
FauI	CCCGC	2 cut(s)	83, 311
FbaI	TGATCA	2 cut(s)	10, 103
FblI	GTMKAC	2 cut(s)	192, 297
Fnu4HI	GCNGC	1 cut(s)	316
FokI	GGATG	1 cut(s)	113
Fsp4HI	GCNGC	1 cut(s)	316
FspBI	CTAG	2 cut(s)	432, 569
GluI	GCNGC	1 cut(s)	316
HaeIII	GGCC	2 cut(s)	144, 236
HapII	CCGG	5 cut(s)	156, 176, 227, 237, 269
HgaI	GACGC	2 cut(s)	178, 364
Hin1II	CATG	2 cut(s)	17, 349
HincII	GTYRAC	2 cut(s)	193, 289
HindII	GTYRAC	2 cut(s)	193, 289
HinfI	GANTC	3 cut(s)	23, 121, 482
HpaI	GTTAAC	1 cut(s)	289
HpaII	CCGG	5 cut(s)	156, 176, 227, 237, 269
HphI	GGTGA	3 cut(s)	216, 258, 328
Hpy166II	GTNNAC	5 cut(s)	166, 193, 289, 298, 370
Hpy188I	TCNGA	5 cut(s)	10, 208, 282, 380, 427
Hpy188III	TCNNGA	7 cut(s)	20, 107, 182, 384, 401, 491, 575
Hpy8I	GTNNAC	5 cut(s)	166, 193, 289, 298, 370
Hpy99I	CGWCG	3 cut(s)	155, 194, 296
HpyAV	CCTTC	1 cut(s)	129
HpyCH4III	ACNGT	4 cut(s)	197, 340, 367, 521
HpyCH4IV	ACGT	2 cut(s)	150, 291
HpyCH4V	TGCA	1 cut(s)	532
HpyF3I	CTNAG	1 cut(s)	29
HpySE526I	ACGT	2 cut(s)	150, 291
Hsp92II	CATG	2 cut(s)	17, 349
KflI	GGGWCCC	1 cut(s)	179
Ksp22I	TGATCA	2 cut(s)	10, 103
KspAI	GTTAAC	1 cut(s)	289
LmnI	GCTCC	3 cut(s)	22, 209, 355
LweI	GCATC	2 cut(s)	418, 489
MaeI	CTAG	2 cut(s)	432, 569
MaeII	ACGT	2 cut(s)	150, 291
MaeIII	GTNAC	4 cut(s)	222, 264, 452, 521
MboII	GAAGA	4 cut(s)	35, 203, 385, 406
MflI	RGATCY	3 cut(s)	380, 390, 571
MhlI	GDGCHC	1 cut(s)	35
MmeI	TCCRAC	1 cut(s)	260
MseI	TTAA	1 cut(s)	288
MslI	CAYNNNNRTG	1 cut(s)	464
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	5 cut(s)	156, 176, 227, 237, 269
MspR9I	CCNGG	4 cut(s)	177, 270, 360, 542
MvaI	CCWGG	2 cut(s)	360, 542
MvnI	CGCG	1 cut(s)	189
NciI	CCSGG	2 cut(s)	177, 270
NlaIII	CATG	2 cut(s)	17, 349
NlaIV	GGNNCC	5 cut(s)	180, 181, 357, 364, 539
NmuCI	GTSAC	4 cut(s)	222, 264, 452, 521
OliI	CACNNNNGTG	1 cut(s)	464
PcsI	WCGNNNNNNNCGW	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	23, 121, 482
PflFI	GACNNNGTC	2 cut(s)	177, 374
PkrI	GCNGC	1 cut(s)	317
Ple19I	CGATCG	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	179
Psp5II	RGGWCCY	1 cut(s)	179
Psp6I	CCWGG	2 cut(s)	358, 540
PspEI	GGTNACC	1 cut(s)	264
PspGI	CCWGG	2 cut(s)	358, 540
PspN4I	GGNNCC	5 cut(s)	180, 181, 357, 364, 539
PspPI	GGNCC	2 cut(s)	179, 363
PspPPI	RGGWCCY	1 cut(s)	179
PsuI	RGATCY	3 cut(s)	380, 390, 571
PsyI	GACNNNGTC	2 cut(s)	177, 374
PvuI	CGATCG	1 cut(s)	187
PvuII	CAGCTG	1 cut(s)	38
RseI	CAYNNNNRTG	1 cut(s)	464
SalI	GTCGAC	1 cut(s)	191
SaqAI	TTAA	1 cut(s)	288
SatI	GCNGC	1 cut(s)	316
Sau96I	GGNCC	2 cut(s)	179, 363
ScrFI	CCNGG	4 cut(s)	177, 270, 360, 542
SduI	GDGCHC	1 cut(s)	35
SetI	ASST	8 cut(s)	40, 153, 234, 294, 454, 468, 513, 546
SfaNI	GCATC	2 cut(s)	418, 489
SfcI	CTRYAG	1 cut(s)	196
SinI	GGWCC	2 cut(s)	179, 363
SmiMI	CAYNNNNRTG	1 cut(s)	464
SmlI	CTYRAG	1 cut(s)	84
SmoI	CTYRAG	1 cut(s)	84
SsiI	CCGC	3 cut(s)	90, 315, 318
SspMI	CTAG	2 cut(s)	432, 569
StyD4I	CCNGG	4 cut(s)	175, 268, 358, 540
TaaI	ACNGT	4 cut(s)	197, 340, 367, 521
TaiI	ACGT	2 cut(s)	153, 294
TaqI	TCGA	4 cut(s)	172, 192, 480, 492
TauI	GCSGC	1 cut(s)	318
TfiI	GAWTC	3 cut(s)	23, 121, 482
Tru1I	TTAA	1 cut(s)	288
Tru9I	TTAA	1 cut(s)	288
TscAI	CASTG	1 cut(s)	33
TseFI	GTSAC	4 cut(s)	222, 264, 452, 521
Tsp45I	GTSAC	4 cut(s)	222, 264, 452, 521
TspDTI	ATGAA	2 cut(s)	203, 321
TspGWI	ACGGA	1 cut(s)	386
TspRI	CASTG	1 cut(s)	33
Tth111I	GACNNNGTC	2 cut(s)	177, 374
VpaK11BI	GGWCC	2 cut(s)	179, 363
XmiI	GTMKAC	2 cut(s)	192, 297
XspI	CTAG	2 cut(s)	432, 569

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.