Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008935

Physical Location & Seq

Genomic Coordinates Reverse (-)

2836434 .. 2836838

Gene Structure 405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G039800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGACCCTTTTCTTTACACACCAGAGAAGTCCTCACAGTACCACCCTTGGAGTACCCTCCATTCGGACCCCCATACACAACAACTCCATCGTACTCCGCGTGGAGACGCCAACTCCGATCTTCAACTCGAGAGGATCAACGTCTATTACAATGAGGCTTCCGGCGGCCGGTACGTCCCTCGCGCCGTCCTCATGGATCTTGAGCCCGGTACCATGGACAGCATCCGATCCGGTCCGTACGGCCAGATCTTCCGCCCTGACAACTTCGTCTTCGGCCAGTCCGGTGCCGGCAACAACTGGGCCAAAGGTCATTACACCGAAGGTGCCGAGTTGATCGATTCCGTTCTCGATGTTGTTCGCAAGGAGGCCGAGAATTGTGACTGCCTGTTGAGGCCGAGATGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005856 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko04145 ko04540 ko05130 map04145 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

135

Amino Acids

15.17

Weight (kDa)

5.44

Isoelectric Point (pI)

31.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29550
fragaria_vesca	FvH4_3g37460
malus_domestica	MD03G1080000.v1.1 MD11G1084600.v1.1
prunus_persica	Prupe.1G039800_v2.0.a1 Prupe.6G064900_v2.0.a1
pyrus_communis	pycom03g06400
rosa_chinensis	RchiOBHm_Chr2g0121521 RchiOBHm_Chr5g0067351
rosa_laevigata	RLG00000035929
rosa_multiflora	Rmu_sc0000079.1_g000002 Rmu_sc0028950.1_g000001 Rmu_ssc0000354.1_g000004
rosa_roxburghii	Rroxscaffold_1G00013030 Rroxscaffold_1G00013730
rosa_rugosa	Rorug01G0335100 Rorug05G0268700 Rorug05G0268700 Rorug05G0384400 Rorug06G0249000
rosa_samantha	Rh5AG443900
rosa_wichuraiana	Rw5G041460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	266
Acc65I	GGTACC	1 cut(s)	209
AccB1I	GGYRCC	3 cut(s)	209, 284, 323
AccII	CGCG	2 cut(s)	100, 183
AciI	CCGC	3 cut(s)	98, 165, 253
AclWI	GGATC	3 cut(s)	143, 204, 222
AcoI	YGGCCR	3 cut(s)	166, 241, 274
AcyI	GRCGYC	1 cut(s)	108
AfaI	GTAC	6 cut(s)	41, 55, 94, 173, 211, 239
AfiI	CCNNNNNNNGG	2 cut(s)	64, 168
AgsI	TTSAA	1 cut(s)	125
Alw26I	GTCTC	1 cut(s)	99
AlwI	GGATC	3 cut(s)	143, 204, 222
Ama87I	CYCGRG	1 cut(s)	128
AoxI	GGCC	6 cut(s)	166, 241, 274, 300, 366, 392
Asp718I	GGTACC	1 cut(s)	209
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	4 cut(s)	4, 67, 233, 300
AsuC2I	CCSGG	1 cut(s)	207
AvaI	CYCGRG	1 cut(s)	128
AvaII	GGWCC	3 cut(s)	4, 67, 233
BanI	GGYRCC	3 cut(s)	209, 284, 323
BanII	GRGCYC	1 cut(s)	207
BbsI	GAAGAC	1 cut(s)	262
BccI	CCATC	1 cut(s)	96
BceAI	ACGGC	2 cut(s)	170, 256
BcnI	CCSGG	1 cut(s)	207
BcoDI	GTCTC	1 cut(s)	99
BglII	AGATCT	1 cut(s)	246
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
Bme1390I	CCNGG	1 cut(s)	207
Bme18I	GGWCC	3 cut(s)	4, 67, 233
BmeT110I	CYCGRG	1 cut(s)	128
BmgT120I	GGNCC	4 cut(s)	4, 67, 233, 300
BmiI	GGNNCC	5 cut(s)	6, 69, 211, 286, 325
BmrFI	CCNGG	1 cut(s)	207
BmrI	ACTGGG	1 cut(s)	307
BmsI	GCATC	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	262
BplI	GAGNNNNNCTC	2 cut(s)	17, 49
BpuEI	CTTGAG	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	207
Bsa29I	ATCGAT	1 cut(s)	336
BsaHI	GRCGYC	1 cut(s)	108
BsaJI	CCNNGG	2 cut(s)	47, 213
BsaWI	WCCGGW	2 cut(s)	230, 281
BsaXI	ACNNNNNCTCC	4 cut(s)	69, 98, 99, 128
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 168
Bse118I	RCCGGY	2 cut(s)	168, 287
Bse1I	ACTGG	2 cut(s)	277, 302
BseCI	ATCGAT	1 cut(s)	336
BseDI	CCNNGG	2 cut(s)	47, 213
BseGI	GGATG	1 cut(s)	222
BseLI	CCNNNNNNNGG	2 cut(s)	64, 168
BseNI	ACTGG	2 cut(s)	277, 302
BseX3I	CGGCCG	1 cut(s)	166
Bsh1236I	CGCG	2 cut(s)	100, 183
Bsh1285I	CGRYCG	1 cut(s)	169
BshFI	GGCC	6 cut(s)	168, 243, 276, 302, 368, 394
BshNI	GGYRCC	3 cut(s)	209, 284, 323
BshVI	ATCGAT	1 cut(s)	336
BsiEI	CGRYCG	1 cut(s)	169
BsiHKCI	CYCGRG	1 cut(s)	128
BsiSI	CCGG	6 cut(s)	162, 169, 207, 231, 282, 288
BsiWI	CGTACG	1 cut(s)	237
BslFI	GGGAC	1 cut(s)	161
BslI	CCNNNNNNNGG	2 cut(s)	64, 168
BsmAI	GTCTC	1 cut(s)	99
BsmBI	CGTCTC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	161
BsnI	GGCC	6 cut(s)	168, 243, 276, 302, 368, 394
BsoBI	CYCGRG	1 cut(s)	128
Bsp1286I	GDGCHC	1 cut(s)	207
Bsp143I	GATC	6 cut(s)	118, 135, 196, 227, 246, 333
Bsp19I	CCATGG	1 cut(s)	213
BspACI	CCGC	3 cut(s)	98, 165, 253
BspANI	GGCC	6 cut(s)	168, 243, 276, 302, 368, 394
BspDI	ATCGAT	1 cut(s)	336
BspFNI	CGCG	2 cut(s)	100, 183
BspLI	GGNNCC	5 cut(s)	6, 69, 211, 286, 325
BspPI	GGATC	3 cut(s)	143, 204, 222
BspT107I	GGYRCC	3 cut(s)	209, 284, 323
BsrFI	RCCGGY	2 cut(s)	168, 287
BsrI	ACTGG	2 cut(s)	277, 302
BssAI	RCCGGY	2 cut(s)	168, 287
BssECI	CCNNGG	2 cut(s)	47, 213
BssMI	GATC	6 cut(s)	118, 135, 196, 227, 246, 333
BssNI	GRCGYC	1 cut(s)	108
BssT1I	CCWWGG	2 cut(s)	47, 213
Bst4CI	ACNGT	1 cut(s)	39
BstACI	GRCGYC	1 cut(s)	108
BstC8I	GCNNGC	1 cut(s)	289
BstDSI	CCRYGG	1 cut(s)	213
BstF5I	GGATG	1 cut(s)	222
BstFNI	CGCG	2 cut(s)	100, 183
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	6 cut(s)	121, 138, 199, 230, 249, 336
BstMAI	GTCTC	1 cut(s)	99
BstMBI	GATC	6 cut(s)	118, 135, 196, 227, 246, 333
BstMCI	CGRYCG	1 cut(s)	169
BstSCI	CCNGG	1 cut(s)	205
BstUI	CGCG	2 cut(s)	100, 183
BstV2I	GAAGAC	1 cut(s)	262
BstX2I	RGATCY	2 cut(s)	196, 246
BstYI	RGATCY	2 cut(s)	196, 246
BstZI	CGGCCG	1 cut(s)	166
Bsu15I	ATCGAT	1 cut(s)	336
BsuRI	GGCC	6 cut(s)	168, 243, 276, 302, 368, 394
BsuTUI	ATCGAT	1 cut(s)	336
BtgI	CCRYGG	1 cut(s)	213
BtsCI	GGATG	1 cut(s)	222
Cac8I	GCNNGC	1 cut(s)	289
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	2 cut(s)	168, 287
Cfr13I	GGNCC	4 cut(s)	4, 67, 233, 300
ClaI	ATCGAT	1 cut(s)	336
CpoI	CGGWCCG	1 cut(s)	233
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	6 cut(s)	40, 54, 93, 172, 210, 238
CspI	CGGWCCG	1 cut(s)	233
CviAII	CATG	2 cut(s)	193, 214
CviJI	RGCY	8 cut(s)	158, 168, 205, 243, 276, 302, 368, 394
CviKI_1	RGCY	8 cut(s)	158, 168, 205, 243, 276, 302, 368, 394
CviQI	GTAC	6 cut(s)	40, 54, 93, 172, 210, 238
DpnI	GATC	6 cut(s)	120, 137, 198, 229, 248, 335
DpnII	GATC	6 cut(s)	118, 135, 196, 227, 246, 333
DrdI	GACNNNNNNGTC	1 cut(s)	266
DseDI	GACNNNNNNGTC	1 cut(s)	266
EaeI	YGGCCR	3 cut(s)	166, 241, 274
EagI	CGGCCG	1 cut(s)	166
EciI	GGCGGA	1 cut(s)	242
EclXI	CGGCCG	1 cut(s)	166
Eco130I	CCWWGG	2 cut(s)	47, 213
Eco24I	GRGCYC	1 cut(s)	207
Eco47I	GGWCC	3 cut(s)	4, 67, 233
Eco52I	CGGCCG	1 cut(s)	166
Eco88I	CYCGRG	1 cut(s)	128
EcoT14I	CCWWGG	2 cut(s)	47, 213
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	2 cut(s)	47, 213
Esp3I	CGTCTC	1 cut(s)	99
FaeI	CATG	2 cut(s)	196, 217
FaiI	YATR	3 cut(s)	75, 194, 215
FaqI	GGGAC	1 cut(s)	161
FatI	CATG	2 cut(s)	192, 213
Fnu4HI	GCNGC	1 cut(s)	166
FokI	GGATG	1 cut(s)	209
FriOI	GRGCYC	1 cut(s)	207
Fsp4HI	GCNGC	1 cut(s)	166
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	1 cut(s)	166
HaeIII	GGCC	6 cut(s)	168, 243, 276, 302, 368, 394
HapII	CCGG	6 cut(s)	162, 169, 207, 231, 282, 288
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	196, 217
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	1 cut(s)	338
HpaII	CCGG	6 cut(s)	162, 169, 207, 231, 282, 288
Hpy188I	TCNGA	3 cut(s)	67, 118, 227
Hpy188III	TCNNGA	3 cut(s)	130, 200, 347
HpyAV	CCTTC	1 cut(s)	314
HpyCH4III	ACNGT	1 cut(s)	39
HpyCH4IV	ACGT	2 cut(s)	141, 174
HpySE526I	ACGT	2 cut(s)	141, 174
Hsp92I	GRCGYC	1 cut(s)	108
Hsp92II	CATG	2 cut(s)	196, 217
HspAI	GCGC	1 cut(s)	183
KpnI	GGTACC	1 cut(s)	213
KroI	GCCGGC	1 cut(s)	287
KroNI	GCCGGC	1 cut(s)	289
Kzo9I	GATC	6 cut(s)	118, 135, 196, 227, 246, 333
LweI	GCATC	1 cut(s)	231
MaeII	ACGT	2 cut(s)	141, 174
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	6 cut(s)	120, 137, 198, 229, 248, 335
MboI	GATC	6 cut(s)	118, 135, 196, 227, 246, 333
MboII	GAAGA	3 cut(s)	113, 241, 262
MflI	RGATCY	2 cut(s)	196, 246
MhlI	GDGCHC	1 cut(s)	207
MluCI	AATT	1 cut(s)	373
MnlI	CCTC	8 cut(s)	43, 68, 126, 148, 189, 200, 358, 384
MroNI	GCCGGC	1 cut(s)	287
MseI	TTAA	1 cut(s)	403
MspI	CCGG	6 cut(s)	162, 169, 207, 231, 282, 288
MspR9I	CCNGG	1 cut(s)	207
MvnI	CGCG	2 cut(s)	100, 183
NaeI	GCCGGC	1 cut(s)	289
NciI	CCSGG	1 cut(s)	207
NcoI	CCATGG	1 cut(s)	213
NdeII	GATC	6 cut(s)	118, 135, 196, 227, 246, 333
NgoMIV	GCCGGC	1 cut(s)	287
NlaIII	CATG	2 cut(s)	196, 217
NlaIV	GGNNCC	5 cut(s)	6, 69, 211, 286, 325
NmeAIII	GCCGAG	2 cut(s)	352, 394
NmuCI	GTSAC	1 cut(s)	377
PaeR7I	CTCGAG	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	2 cut(s)	97, 114
PdiI	GCCGGC	1 cut(s)	289
PfeI	GAWTC	1 cut(s)	338
Pfl23II	CGTACG	1 cut(s)	237
PkrI	GCNGC	1 cut(s)	167
PspLI	CGTACG	1 cut(s)	237
PspN4I	GGNNCC	5 cut(s)	6, 69, 211, 286, 325
PspPI	GGNCC	4 cut(s)	4, 67, 233, 300
PsuI	RGATCY	2 cut(s)	196, 246
RsaI	GTAC	6 cut(s)	41, 55, 94, 173, 211, 239
RsaNI	GTAC	6 cut(s)	40, 54, 93, 172, 210, 238
Rsr2I	CGGWCCG	1 cut(s)	233
RsrII	CGGWCCG	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	403
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	6 cut(s)	118, 135, 196, 227, 246, 333
Sau96I	GGNCC	4 cut(s)	4, 67, 233, 300
ScrFI	CCNGG	1 cut(s)	207
SduI	GDGCHC	1 cut(s)	207
SetI	ASST	4 cut(s)	144, 177, 310, 325
SfaNI	GCATC	1 cut(s)	231
Sfr274I	CTCGAG	1 cut(s)	128
SinI	GGWCC	3 cut(s)	4, 67, 233
SlaI	CTCGAG	1 cut(s)	128
SmlI	CTYRAG	2 cut(s)	128, 200
SmoI	CTYRAG	2 cut(s)	128, 200
Sse9I	AATT	1 cut(s)	373
SsiI	CCGC	3 cut(s)	98, 165, 253
StyD4I	CCNGG	1 cut(s)	205
StyI	CCWWGG	2 cut(s)	47, 213
TaaI	ACNGT	1 cut(s)	39
TaiI	ACGT	2 cut(s)	144, 177
TaqI	TCGA	3 cut(s)	129, 336, 348
TasI	AATT	1 cut(s)	373
TauI	GCSGC	1 cut(s)	168
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	1 cut(s)	403
Tru9I	TTAA	1 cut(s)	403
TseFI	GTSAC	1 cut(s)	377
Tsp45I	GTSAC	1 cut(s)	377
TspGWI	ACGGA	2 cut(s)	225, 331
VpaK11BI	GGWCC	3 cut(s)	4, 67, 233
XhoI	CTCGAG	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.