Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028950.1

Orthogroup ID

OG0008935

Physical Location & Seq

Genomic Coordinates Reverse (-)

323 .. 733

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028950.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atgcgagagattcttcacattcagggaggccaatgcggcaaccagatcggagccaagttctgggaggtcgtctgcgccgagcacggcatcgacccaaccggaaggtacaccggcgactccgagcttcagcttgagagggtgaacgtctactacaacgaagccagcggcgggaggtatgtaccacgcgccgtcctcatggatctggagcctgggaccatggacagcgtcagatctggactctacggtcagatcttccgtcctgacaacttcgtcttcggtcagtccggtgcgggaaacaactgggccaaaggtcactacaccgagggggctgagttgatcgattcggttcttgatgtggtgcgaaaggaggccgagaactgtgactgcttgcaaggtatgaatccggtctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04145 ko04540 ko05130 map04145 map04540 map05130

Pfam Domains

Protein Families

Tubulin Tubulin_C

Protein Analysis

136

Amino Acids

14.99

Weight (kDa)

4.74

Isoelectric Point (pI)

31.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G29550
fragaria_vesca	FvH4_3g37460
malus_domestica	MD03G1080000.v1.1 MD11G1084600.v1.1
prunus_persica	Prupe.1G039800_v2.0.a1 Prupe.6G064900_v2.0.a1
pyrus_communis	pycom03g06400
rosa_chinensis	RchiOBHm_Chr2g0121521 RchiOBHm_Chr5g0067351
rosa_laevigata	RLG00000035929
rosa_multiflora	Rmu_sc0000079.1_g000002 Rmu_sc0028950.1_g000001 Rmu_ssc0000354.1_g000004
rosa_roxburghii	Rroxscaffold_1G00013030 Rroxscaffold_1G00013730
rosa_rugosa	Rorug01G0335100 Rorug05G0268700 Rorug05G0268700 Rorug05G0384400 Rorug06G0249000
rosa_samantha	Rh5AG443900
rosa_wichuraiana	Rw5G041460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	243, 269
AccB7I	CCANNNNNTGG	1 cut(s)	60
AccI	GTMKAC	1 cut(s)	147
AccII	CGCG	1 cut(s)	186
AciI	CCGC	4 cut(s)	36, 165, 168, 290
AclWI	GGATC	1 cut(s)	207
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	2 cut(s)	107, 180
AfiI	CCNNNNNNNGG	2 cut(s)	60, 168
AjnI	CCWGG	1 cut(s)	208
AluBI	AGCT	2 cut(s)	124, 130
AluI	AGCT	2 cut(s)	124, 130
Alw21I	GWGCWC	1 cut(s)	84
AlwI	GGATC	1 cut(s)	207
AoxI	GGCC	3 cut(s)	28, 303, 369
AspLEI	GCGC	2 cut(s)	77, 188
AspS9I	GGNCC	2 cut(s)	213, 303
AsuHPI	GGTGA	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	213
BbsI	GAAGAC	1 cut(s)	265
Bbv12I	GWGCWC	1 cut(s)	84
BceAI	ACGGC	2 cut(s)	100, 173
BcgI	CGANNNNNNTGC	2 cut(s)	28, 62
BciT130I	CCWGG	1 cut(s)	210
BfaI	CTAG	1 cut(s)	409
BglI	GCCNNNNNGGC	1 cut(s)	36
BglII	AGATCT	2 cut(s)	230, 249
BisI	GCNGC	2 cut(s)	37, 166
BlsI	GCNGC	2 cut(s)	38, 167
Bme1390I	CCNGG	1 cut(s)	210
Bme18I	GGWCC	1 cut(s)	213
BmgT120I	GGNCC	2 cut(s)	213, 303
BmiI	GGNNCC	3 cut(s)	52, 207, 214
BmrFI	CCNGG	1 cut(s)	210
BmrI	ACTGGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	96
BmuI	ACTGGG	1 cut(s)	310
BpiI	GAAGAC	1 cut(s)	265
BpmI	CTGGAG	1 cut(s)	224
BpuEI	CTTGAG	1 cut(s)	152
Bsa29I	ATCGAT	1 cut(s)	339
BsaJI	CCNNGG	3 cut(s)	209, 216, 321
BsaWI	WCCGGW	3 cut(s)	98, 284, 403
Bsc4I	CCNNNNNNNGG	2 cut(s)	60, 168
Bse118I	RCCGGY	1 cut(s)	110
Bse1I	ACTGG	1 cut(s)	305
BseBI	CCWGG	1 cut(s)	210
BseCI	ATCGAT	1 cut(s)	339
BseDI	CCNNGG	3 cut(s)	209, 216, 321
BseLI	CCNNNNNNNGG	2 cut(s)	60, 168
BseMII	CTCAG	1 cut(s)	321
BseNI	ACTGG	1 cut(s)	305
Bsh1236I	CGCG	1 cut(s)	186
BshFI	GGCC	3 cut(s)	30, 305, 371
BshVI	ATCGAT	1 cut(s)	339
BsiHKAI	GWGCWC	1 cut(s)	84
BsiSI	CCGG	4 cut(s)	99, 111, 285, 404
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	2 cut(s)	60, 168
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	3 cut(s)	30, 305, 371
Bsp1286I	GDGCHC	1 cut(s)	84
Bsp143I	GATC	5 cut(s)	45, 199, 230, 249, 336
Bsp19I	CCATGG	1 cut(s)	216
BspACI	CCGC	4 cut(s)	36, 165, 168, 290
BspANI	GGCC	3 cut(s)	30, 305, 371
BspCNI	CTCAG	1 cut(s)	322
BspDI	ATCGAT	1 cut(s)	339
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	3 cut(s)	52, 207, 214
BspPI	GGATC	1 cut(s)	207
BsrFI	RCCGGY	1 cut(s)	110
BsrI	ACTGG	1 cut(s)	305
BssAI	RCCGGY	1 cut(s)	110
BssECI	CCNNGG	3 cut(s)	209, 216, 321
BssMI	GATC	5 cut(s)	45, 199, 230, 249, 336
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	210
Bst4CI	ACNGT	2 cut(s)	245, 380
BstC8I	GCNNGC	2 cut(s)	163, 389
BstDEI	CTNAG	1 cut(s)	330
BstDSI	CCRYGG	1 cut(s)	216
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	2 cut(s)	77, 188
BstKTI	GATC	5 cut(s)	48, 202, 233, 252, 339
BstMBI	GATC	5 cut(s)	45, 199, 230, 249, 336
BstMWI	GCNNNNNNNGC	1 cut(s)	36
BstNI	CCWGG	1 cut(s)	210
BstSCI	CCNGG	1 cut(s)	208
BstUI	CGCG	1 cut(s)	186
BstV2I	GAAGAC	1 cut(s)	265
BstX2I	RGATCY	3 cut(s)	199, 230, 249
BstYI	RGATCY	3 cut(s)	199, 230, 249
Bsu15I	ATCGAT	1 cut(s)	339
BsuRI	GGCC	3 cut(s)	30, 305, 371
BsuTUI	ATCGAT	1 cut(s)	339
BtgI	CCRYGG	1 cut(s)	216
Cac8I	GCNNGC	2 cut(s)	163, 389
CfoI	GCGC	2 cut(s)	77, 188
Cfr10I	RCCGGY	1 cut(s)	110
Cfr13I	GGNCC	2 cut(s)	213, 303
ClaI	ATCGAT	1 cut(s)	339
CseI	GACGC	1 cut(s)	214
Csp6I	GTAC	2 cut(s)	106, 179
CviAII	CATG	2 cut(s)	196, 217
CviJI	RGCY	9 cut(s)	30, 53, 124, 130, 161, 208, 305, 329, 371
CviKI_1	RGCY	9 cut(s)	30, 53, 124, 130, 161, 208, 305, 329, 371
CviQI	GTAC	2 cut(s)	106, 179
DdeI	CTNAG	1 cut(s)	330
DpnI	GATC	5 cut(s)	47, 201, 232, 251, 338
DpnII	GATC	5 cut(s)	45, 199, 230, 249, 336
DrdI	GACNNNNNNGTC	2 cut(s)	243, 269
DseDI	GACNNNNNNGTC	2 cut(s)	243, 269
Eco130I	CCWWGG	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	208
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	2 cut(s)	199, 220
FaiI	YATR	4 cut(s)	177, 197, 218, 398
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	2 cut(s)	195, 216
FauI	CCCGC	2 cut(s)	161, 283
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	2 cut(s)	37, 166
Fsp4HI	GCNGC	2 cut(s)	37, 166
FspBI	CTAG	1 cut(s)	409
GlaI	GCGC	2 cut(s)	76, 187
GluI	GCNGC	2 cut(s)	37, 166
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	3 cut(s)	30, 305, 371
HapII	CCGG	4 cut(s)	99, 111, 285, 404
HgaI	GACGC	1 cut(s)	214
HhaI	GCGC	2 cut(s)	77, 188
Hin1II	CATG	2 cut(s)	199, 220
Hin6I	GCGC	2 cut(s)	75, 186
HinP1I	GCGC	2 cut(s)	75, 186
HinfI	GANTC	5 cut(s)	10, 116, 237, 341, 400
HpaII	CCGG	4 cut(s)	99, 111, 285, 404
HphI	GGTGA	1 cut(s)	151
Hpy166II	GTNNAC	3 cut(s)	108, 142, 148
Hpy188I	TCNGA	4 cut(s)	50, 121, 230, 249
Hpy188III	TCNNGA	4 cut(s)	203, 234, 260, 350
Hpy8I	GTNNAC	3 cut(s)	108, 142, 148
HpyAV	CCTTC	1 cut(s)	96
HpyCH4III	ACNGT	2 cut(s)	245, 380
HpyCH4IV	ACGT	1 cut(s)	144
HpyCH4V	TGCA	1 cut(s)	391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	36
HpyF3I	CTNAG	1 cut(s)	330
HpySE526I	ACGT	1 cut(s)	144
Hsp92II	CATG	2 cut(s)	199, 220
HspAI	GCGC	2 cut(s)	75, 186
Kzo9I	GATC	5 cut(s)	45, 199, 230, 249, 336
LmnI	GCTCC	2 cut(s)	50, 205
LweI	GCATC	1 cut(s)	96
MaeI	CTAG	1 cut(s)	409
MaeII	ACGT	1 cut(s)	144
MaeIII	GTNAC	2 cut(s)	311, 380
MalI	GATC	5 cut(s)	47, 201, 232, 251, 338
MboI	GATC	5 cut(s)	45, 199, 230, 249, 336
MboII	GAAGA	3 cut(s)	5, 244, 265
MflI	RGATCY	3 cut(s)	199, 230, 249
MhlI	GDGCHC	1 cut(s)	84
MlyI	GAGTC	2 cut(s)	110, 231
MnlI	CCTC	7 cut(s)	20, 58, 129, 165, 203, 316, 361
MspA1I	CMGCKG	1 cut(s)	165
MspI	CCGG	4 cut(s)	99, 111, 285, 404
MspR9I	CCNGG	1 cut(s)	210
MvaI	CCWGG	1 cut(s)	210
MvnI	CGCG	1 cut(s)	186
MwoI	GCNNNNNNNGC	1 cut(s)	36
NcoI	CCATGG	1 cut(s)	216
NdeII	GATC	5 cut(s)	45, 199, 230, 249, 336
NlaIII	CATG	2 cut(s)	199, 220
NlaIV	GGNNCC	3 cut(s)	52, 207, 214
NmeAIII	GCCGAG	2 cut(s)	103, 397
NmuCI	GTSAC	2 cut(s)	311, 380
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PfeI	GAWTC	3 cut(s)	10, 341, 400
PflFI	GACNNNGTC	1 cut(s)	224
PflMI	CCANNNNNTGG	1 cut(s)	60
PkrI	GCNGC	2 cut(s)	38, 167
PleI	GAGTC	2 cut(s)	110, 231
PpsI	GAGTC	2 cut(s)	110, 231
Psp6I	CCWGG	1 cut(s)	208
PspGI	CCWGG	1 cut(s)	208
PspN4I	GGNNCC	3 cut(s)	52, 207, 214
PspPI	GGNCC	2 cut(s)	213, 303
PsrI	GAACNNNNNNTAC	2 cut(s)	134, 166
PsuI	RGATCY	3 cut(s)	199, 230, 249
PsyI	GACNNNGTC	1 cut(s)	224
RsaI	GTAC	2 cut(s)	107, 180
RsaNI	GTAC	2 cut(s)	106, 179
SatI	GCNGC	2 cut(s)	37, 166
Sau3AI	GATC	5 cut(s)	45, 199, 230, 249, 336
Sau96I	GGNCC	2 cut(s)	213, 303
SchI	GAGTC	2 cut(s)	110, 231
ScrFI	CCNGG	1 cut(s)	210
SduI	GDGCHC	1 cut(s)	84
SetI	ASST	8 cut(s)	69, 107, 126, 132, 147, 176, 313, 397
SfaNI	GCATC	1 cut(s)	96
SgrAI	CRCCGGYG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	213
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SsiI	CCGC	4 cut(s)	36, 165, 168, 290
SspMI	CTAG	1 cut(s)	409
StyD4I	CCNGG	1 cut(s)	208
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	245, 380
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	2 cut(s)	90, 339
TaqII	GACCGA	1 cut(s)	266
TauI	GCSGC	2 cut(s)	39, 168
TfiI	GAWTC	3 cut(s)	10, 341, 400
TseFI	GTSAC	2 cut(s)	311, 380
Tsp45I	GTSAC	2 cut(s)	311, 380
TspGWI	ACGGA	1 cut(s)	245
Tth111I	GACNNNGTC	1 cut(s)	224
Van91I	CCANNNNNTGG	1 cut(s)	60
VpaK11BI	GGWCC	1 cut(s)	213
XmiI	GTMKAC	1 cut(s)	147
XspI	CTAG	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.