Rroxscaffold_1G00013030

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
16061712 .. 16064608
2897 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00013030.1

Sequence Viewer

Length: 1341 bp
ATGCGAGAGATTCTTCACATTCAGGGAGGCCAATGCGGCAACCAGATCGGAGCCAAGTTCTGGGAGGTCGTCTGCGCCGAGCACGGCATCGACCCAACCGGAAGGTACACCGGCGACTCCGAGCTTCAGCTTGAGAGGGTGAACGTCTACTACAACGAAGCCAGCGGCGGGAGGTATGTACCACGCGCCGTCCTCATGGATCTGGAGCCTGGGACCATGGACAGCGTCAGATCTGGACTCTACGGTCAGATCTTCCGTCCTGATAACTTCGTCTTCGGTCAGTCTGGTGCGGGAAACAACTGGGCCAAAGGTCACTACACCGAGGGGGCTGAGTTGATCGATTCGGTTCTTGATGTGGTGCGAAAGGAGGCCGAGAACTGTGACTGCTTGCAAGGGTTCCAGGTGTGCCATTCTTTGGGTGGTGGTACTGGATCTGGAATGGGAACGCTTCTGATTTCAAAGATTAGGGAGGAGTACCCAGATCGGATGATGATGACTTTCTCTGTGTTCCCATCTCCCAAGGTCTCAGATACTGTTGTGGAGCCTTACAATGCTACTTTGTCTGTTCATCAGCTTGTAGAGAACGCAGATGAGTGTATGGTGCTTGACAATGAGGCTCTCTATGACATTTGCTTCCGCACACTTAAACTCACGACCCCCAGCTTTGGTGATTTGAATCACTTGATCTCTGCAACAATGTCTGGAGTTACATGCTGCCTAAGGTTCCCTGGACAGCTTAACTCTGATTTGCGCAAGCTTGCTGTTAACCTCATCCCCTTCCCTCGTCTTCACTTTTTCATGGTCGGTTTTGCTCCTCTGACCTCAAGAGGGTCTCAGCAGTACAGAGCTTTGACTGTCCCAGAACTCACCCAGCAAATGTGGGATTCCAAGAACATGATGTGTGCTGCTGATCCCCGACATGGAAGGTACCTCACAGCATCAGCCATGTTCCGTGGTAAGATGAGCACCAAGGAAGTGGATGACCAGATGATGAATGTGCAGAACAAGAACTCTTCCTACTTTGTTGAATGGATCCCCAACAACGTCAAGTCTACAGTGTGTGACATCCCACCAACTGGTCTCAAGATGGCATCAACTTTCATTGGAAACTCTACATCCATTCAAGAGATGTTCAGGAGGGTGAGTGAGCAGTTCACTGCTATGTTCAGGAGGAAGGCTTTCTTGCATTGGTACACTGGTGAAGGCATGGACGAGATGGAATTCACCGAAGCTGAGAGCAACATGAATGATCTGGTGTCAGAATATCAGCAGTACCAGGATGCCACTGCTGATGAGGATGAGTATGAAGATGAACAGGGAGAGTATGAGGAGGAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

446

Amino Acids

50.23

Weight (kDa)

4.75

Isoelectric Point (pI)

36.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 3 - 211 1.9e-64 Tubulin/FtsZ family, GTPase domain
Tubulin_C PF03953 261 - 382 1.6e-40 Tubulin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 243
Acc16I TGCGCA 1 cut(s) 752
Acc65I GGTACC 1 cut(s) 927
AccB1I GGYRCC 1 cut(s) 927
AccB7I CCANNNNNTGG 3 cut(s) 60, 415, 1076
AccI GTMKAC 2 cut(s) 147, 1052
AccII CGCG 1 cut(s) 186
AciI CCGC 5 cut(s) 36, 165, 168, 290, 637
AclWI GGATC 5 cut(s) 207, 439, 905, 1027, 1040
AcsI RAATTY 2 cut(s) 1220, 1335
AcuI CTGAAG 1 cut(s) 110
AfaI GTAC 8 cut(s) 107, 180, 427, 476, 842, 929, 1193, 1274
AfiI CCNNNNNNNGG 7 cut(s) 60, 168, 415, 665, 828, 920, 1076
AgsI TTSAA 4 cut(s) 459, 676, 1028, 1124
AjnI CCWGG 4 cut(s) 208, 399, 727, 1275
AluBI AGCT 8 cut(s) 124, 130, 574, 663, 736, 757, 848, 1232
AluI AGCT 8 cut(s) 124, 130, 574, 663, 736, 757, 848, 1232
Alw21I GWGCWC 2 cut(s) 84, 968
Alw26I GTCTC 3 cut(s) 529, 837, 1085
AlwI GGATC 5 cut(s) 207, 439, 905, 1027, 1040
AlwNI CAGNNNCTG 1 cut(s) 533
AoxI GGCC 3 cut(s) 28, 303, 369
ApeKI GCWGC 2 cut(s) 714, 905
ApoI RAATTY 2 cut(s) 1220, 1335
Asp700I GAANNNNTTC 1 cut(s) 1178
Asp718I GGTACC 1 cut(s) 927
AspLEI GCGC 3 cut(s) 77, 188, 753
AspS9I GGNCC 2 cut(s) 213, 303
AsuHPI GGTGA 6 cut(s) 151, 680, 859, 1153, 1211, 1216
AvaII GGWCC 1 cut(s) 213
AxyI CCTNAGG 1 cut(s) 719
BaeI ACNNNNGTAYC 4 cut(s) 522, 555, 1183, 1216
BamHI GGATCC 1 cut(s) 1032
BanI GGYRCC 1 cut(s) 927
BbsI GAAGAC 2 cut(s) 265, 779
Bbv12I GWGCWC 2 cut(s) 84, 968
BbvI GCAGC 2 cut(s) 701, 892
BccI CCATC 3 cut(s) 520, 1081, 1210
BceAI ACGGC 2 cut(s) 100, 173
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciT130I CCWGG 4 cut(s) 210, 401, 729, 1277
BcoDI GTCTC 3 cut(s) 529, 837, 1085
BfmI CTRYAG 1 cut(s) 1053
BglI GCCNNNNNGGC 1 cut(s) 36
BglII AGATCT 2 cut(s) 230, 249
BisI GCNGC 4 cut(s) 37, 166, 715, 906
BlsI GCNGC 4 cut(s) 38, 167, 716, 907
Bme1390I CCNGG 4 cut(s) 210, 401, 729, 1277
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 2 cut(s) 213, 303
BmiI GGNNCC 8 cut(s) 52, 207, 214, 398, 543, 725, 929, 1034
BmrFI CCNGG 4 cut(s) 210, 401, 729, 1277
BmrI ACTGGG 1 cut(s) 310
BmsI GCATC 4 cut(s) 96, 947, 1100, 1270
BmuI ACTGGG 1 cut(s) 310
BpiI GAAGAC 2 cut(s) 265, 779
BpmI CTGGAG 2 cut(s) 224, 723
BpuEI CTTGAG 3 cut(s) 152, 808, 1067
Bsa29I ATCGAT 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 675
BsaI GGTCTC 3 cut(s) 529, 837, 1085
BsaJI CCNNGG 7 cut(s) 209, 216, 321, 519, 727, 952, 969
BsaWI WCCGGW 1 cut(s) 98
BsaXI ACNNNNNCTCC 2 cut(s) 1129, 1159
Bsc4I CCNNNNNNNGG 7 cut(s) 60, 168, 415, 665, 828, 920, 1076
Bse118I RCCGGY 1 cut(s) 110
Bse1I ACTGG 4 cut(s) 305, 433, 1081, 1201
Bse21I CCTNAGG 1 cut(s) 719
Bse8I GATNNNNATC 1 cut(s) 675
BseBI CCWGG 4 cut(s) 210, 401, 729, 1277
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 7 cut(s) 209, 216, 321, 519, 727, 952, 969
BseGI GGATG 7 cut(s) 492, 771, 985, 1065, 1115, 1285, 1303
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 7 cut(s) 60, 168, 415, 665, 828, 920, 1076
BseMII CTCAG 4 cut(s) 321, 540, 848, 1224
BseNI ACTGG 4 cut(s) 305, 433, 1081, 1201
BseRI GAGGAG 2 cut(s) 485, 804
BseXI GCAGC 2 cut(s) 701, 892
BseYI CCCAGC 2 cut(s) 659, 870
BsgI GTGCAG 1 cut(s) 1019
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 3 cut(s) 30, 305, 371
BshNI GGYRCC 1 cut(s) 927
BshVI ATCGAT 1 cut(s) 339
BsiHKAI GWGCWC 2 cut(s) 84, 968
BsiSI CCGG 2 cut(s) 99, 111
BslFI GGGAC 2 cut(s) 226, 842
BslI CCNNNNNNNGG 7 cut(s) 60, 168, 415, 665, 828, 920, 1076
BsmAI GTCTC 3 cut(s) 529, 837, 1085
BsmFI GGGAC 2 cut(s) 226, 842
BsnI GGCC 3 cut(s) 30, 305, 371
Bso31I GGTCTC 3 cut(s) 529, 837, 1085
Bsp1286I GDGCHC 2 cut(s) 84, 968
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 5 cut(s) 36, 165, 168, 290, 637
BspANI GGCC 3 cut(s) 30, 305, 371
BspCNI CTCAG 4 cut(s) 322, 539, 847, 1225
BspDI ATCGAT 1 cut(s) 339
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 8 cut(s) 52, 207, 214, 398, 543, 725, 929, 1034
BspPI GGATC 5 cut(s) 207, 439, 905, 1027, 1040
BspT107I GGYRCC 1 cut(s) 927
BspTNI GGTCTC 3 cut(s) 529, 837, 1085
BsrFI RCCGGY 1 cut(s) 110
BsrI ACTGG 4 cut(s) 305, 433, 1081, 1201
BssAI RCCGGY 1 cut(s) 110
BssECI CCNNGG 7 cut(s) 209, 216, 321, 519, 727, 952, 969
BssT1I CCWWGG 3 cut(s) 216, 519, 969
Bst2UI CCWGG 4 cut(s) 210, 401, 729, 1277
Bst4CI ACNGT 5 cut(s) 245, 380, 535, 856, 1057
Bst6I CTCTTC 1 cut(s) 1018
BstC8I GCNNGC 4 cut(s) 163, 389, 755, 759
BstDEI CTNAG 5 cut(s) 330, 526, 719, 834, 1233
BstDSI CCRYGG 2 cut(s) 216, 952
BstF5I GGATG 7 cut(s) 492, 771, 985, 1065, 1115, 1285, 1303
BstFNI CGCG 1 cut(s) 186
BstHHI GCGC 3 cut(s) 77, 188, 753
BstMAI GTCTC 3 cut(s) 529, 837, 1085
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 4 cut(s) 210, 401, 729, 1277
BstNSI RCATGY 1 cut(s) 714
BstSCI CCNGG 4 cut(s) 208, 399, 727, 1275
BstSFI CTRYAG 1 cut(s) 1053
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 701, 892
BstV2I GAAGAC 2 cut(s) 265, 779
BstX2I RGATCY 5 cut(s) 199, 230, 249, 431, 1032
BstXI CCANNNNNNTGG 1 cut(s) 976
BstYI RGATCY 5 cut(s) 199, 230, 249, 431, 1032
Bsu15I ATCGAT 1 cut(s) 339
Bsu36I CCTNAGG 1 cut(s) 719
BsuRI GGCC 3 cut(s) 30, 305, 371
BsuTUI ATCGAT 1 cut(s) 339
BtgI CCRYGG 2 cut(s) 216, 952
BtsCI GGATG 7 cut(s) 492, 771, 985, 1065, 1115, 1285, 1303
BtsI GCAGTG 2 cut(s) 1155, 1284
BtsIMutI CAGTG 4 cut(s) 1062, 1155, 1194, 1284
Cac8I GCNNGC 4 cut(s) 163, 389, 755, 759
CaiI CAGNNNCTG 1 cut(s) 533
CfoI GCGC 3 cut(s) 77, 188, 753
Cfr10I RCCGGY 1 cut(s) 110
Cfr13I GGNCC 2 cut(s) 213, 303
ClaI ATCGAT 1 cut(s) 339
CseI GACGC 1 cut(s) 214
Csp6I GTAC 8 cut(s) 106, 179, 426, 475, 841, 928, 1192, 1273
CviAII CATG 9 cut(s) 196, 217, 711, 799, 895, 920, 946, 1207, 1243
CviQI GTAC 8 cut(s) 106, 179, 426, 475, 841, 928, 1192, 1273
DdeI CTNAG 5 cut(s) 330, 526, 719, 834, 1233
DrdI GACNNNNNNGTC 1 cut(s) 243
DseDI GACNNNNNNGTC 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 1018
EarI CTCTTC 1 cut(s) 1018
Eco130I CCWWGG 3 cut(s) 216, 519, 969
Eco31I GGTCTC 3 cut(s) 529, 837, 1085
Eco47I GGWCC 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 110
Eco81I CCTNAGG 1 cut(s) 719
EcoRI GAATTC 1 cut(s) 1220
EcoRII CCWGG 4 cut(s) 208, 399, 727, 1275
EcoT14I CCWWGG 3 cut(s) 216, 519, 969
ErhI CCWWGG 3 cut(s) 216, 519, 969
FaeI CATG 9 cut(s) 199, 220, 714, 802, 898, 923, 949, 1210, 1246
FalI AAGNNNNNCTT 2 cut(s) 1166, 1198
FaqI GGGAC 2 cut(s) 226, 842
FatI CATG 9 cut(s) 195, 216, 710, 798, 894, 919, 945, 1206, 1242
FauI CCCGC 2 cut(s) 161, 283
FblI GTMKAC 2 cut(s) 147, 1052
Fnu4HI GCNGC 4 cut(s) 37, 166, 715, 906
FokI GGATG 7 cut(s) 499, 758, 992, 1052, 1102, 1292, 1310
Fsp4HI GCNGC 4 cut(s) 37, 166, 715, 906
FspI TGCGCA 1 cut(s) 752
GlaI GCGC 3 cut(s) 76, 187, 752
GluI GCNGC 4 cut(s) 37, 166, 715, 906
GsaI CCCAGC 2 cut(s) 663, 874
GsuI CTGGAG 2 cut(s) 224, 723
HaeIII GGCC 3 cut(s) 30, 305, 371
HapII CCGG 2 cut(s) 99, 111
HgaI GACGC 1 cut(s) 214
HhaI GCGC 3 cut(s) 77, 188, 753
Hin1II CATG 9 cut(s) 199, 220, 714, 802, 898, 923, 949, 1210, 1246
Hin6I GCGC 3 cut(s) 75, 186, 751
HinP1I GCGC 3 cut(s) 75, 186, 751
HincII GTYRAC 1 cut(s) 766
HindII GTYRAC 1 cut(s) 766
HindIII AAGCTT 1 cut(s) 755
HinfI GANTC 6 cut(s) 10, 116, 237, 341, 676, 884
HpaI GTTAAC 1 cut(s) 766
HpaII CCGG 2 cut(s) 99, 111
HphI GGTGA 6 cut(s) 151, 680, 859, 1153, 1211, 1216
Hpy166II GTNNAC 7 cut(s) 108, 142, 148, 766, 1053, 1155, 1194
Hpy8I GTNNAC 7 cut(s) 108, 142, 148, 766, 1053, 1155, 1194
HpyAV CCTTC 5 cut(s) 96, 787, 918, 1168, 1196
HpyCH4III ACNGT 5 cut(s) 245, 380, 535, 856, 1057
HpyCH4IV ACGT 2 cut(s) 144, 1044
HpyCH4V TGCA 4 cut(s) 391, 692, 1000, 1186
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 5 cut(s) 330, 526, 719, 834, 1233
HpySE526I ACGT 2 cut(s) 144, 1044
Hsp92II CATG 9 cut(s) 199, 220, 714, 802, 898, 923, 949, 1210, 1246
HspAI GCGC 3 cut(s) 75, 186, 751
KpnI GGTACC 1 cut(s) 931
KspAI GTTAAC 1 cut(s) 766
LmnI GCTCC 4 cut(s) 50, 205, 541, 817
Lsp1109I GCAGC 2 cut(s) 701, 892
LweI GCATC 4 cut(s) 96, 947, 1100, 1270
MaeII ACGT 2 cut(s) 144, 1044
MaeIII GTNAC 4 cut(s) 311, 380, 706, 1061
MboII GAAGA 6 cut(s) 5, 244, 265, 779, 1005, 1319
MflI RGATCY 5 cut(s) 199, 230, 249, 431, 1032
MhlI GDGCHC 2 cut(s) 84, 968
MluCI AATT 2 cut(s) 1220, 1335
MlyI GAGTC 2 cut(s) 110, 231
MroXI GAANNNNTTC 1 cut(s) 1178
MseI TTAA 4 cut(s) 645, 738, 765, 1339
MslI CAYNNNNRTG 1 cut(s) 1160
MspA1I CMGCKG 1 cut(s) 165
MspI CCGG 2 cut(s) 99, 111
MspR9I CCNGG 4 cut(s) 210, 401, 729, 1277
MvaI CCWGG 4 cut(s) 210, 401, 729, 1277
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 36
NcoI CCATGG 1 cut(s) 216
NlaIII CATG 9 cut(s) 199, 220, 714, 802, 898, 923, 949, 1210, 1246
NlaIV GGNNCC 8 cut(s) 52, 207, 214, 398, 543, 725, 929, 1034
NmeAIII GCCGAG 2 cut(s) 103, 397
NmuCI GTSAC 3 cut(s) 311, 380, 1061
NsbI TGCGCA 1 cut(s) 752
NspI RCATGY 1 cut(s) 714
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 1178
PfeI GAWTC 4 cut(s) 10, 341, 676, 884
PflFI GACNNNGTC 1 cut(s) 224
PflMI CCANNNNNTGG 3 cut(s) 60, 415, 1076
PkrI GCNGC 4 cut(s) 38, 167, 716, 907
PleI GAGTC 2 cut(s) 110, 231
PpsI GAGTC 2 cut(s) 110, 231
Psp6I CCWGG 4 cut(s) 208, 399, 727, 1275
PspFI CCCAGC 2 cut(s) 659, 870
PspGI CCWGG 4 cut(s) 208, 399, 727, 1275
PspN4I GGNNCC 8 cut(s) 52, 207, 214, 398, 543, 725, 929, 1034
PspPI GGNCC 2 cut(s) 213, 303
PsrI GAACNNNNNNTAC 4 cut(s) 134, 166, 1001, 1033
PstNI CAGNNNCTG 1 cut(s) 533
PsuI RGATCY 5 cut(s) 199, 230, 249, 431, 1032
PsyI GACNNNGTC 1 cut(s) 224
RsaI GTAC 8 cut(s) 107, 180, 427, 476, 842, 929, 1193, 1274
RsaNI GTAC 8 cut(s) 106, 179, 426, 475, 841, 928, 1192, 1273
RseI CAYNNNNRTG 1 cut(s) 1160
SaqAI TTAA 4 cut(s) 645, 738, 765, 1339
SatI GCNGC 4 cut(s) 37, 166, 715, 906
Sau96I GGNCC 2 cut(s) 213, 303
SchI GAGTC 2 cut(s) 110, 231
ScrFI CCNGG 4 cut(s) 210, 401, 729, 1277
SduI GDGCHC 2 cut(s) 84, 968
SfaNI GCATC 4 cut(s) 96, 947, 1100, 1270
SfcI CTRYAG 1 cut(s) 1053
SgrAI CRCCGGYG 1 cut(s) 110
SinI GGWCC 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 1160
SmlI CTYRAG 3 cut(s) 131, 823, 1082
SmoI CTYRAG 3 cut(s) 131, 823, 1082
Sse9I AATT 2 cut(s) 1220, 1335
SsiI CCGC 5 cut(s) 36, 165, 168, 290, 637
StyD4I CCNGG 4 cut(s) 208, 399, 727, 1275
StyI CCWWGG 3 cut(s) 216, 519, 969
TaaI ACNGT 5 cut(s) 245, 380, 535, 856, 1057
TaiI ACGT 2 cut(s) 147, 1047
TaqI TCGA 2 cut(s) 90, 339
TaqII GACCGA 1 cut(s) 266
TasI AATT 2 cut(s) 1220, 1335
TatI WGTACW 1 cut(s) 840
TauI GCSGC 2 cut(s) 39, 168
TfiI GAWTC 4 cut(s) 10, 341, 676, 884
Tru1I TTAA 4 cut(s) 645, 738, 765, 1339
Tru9I TTAA 4 cut(s) 645, 738, 765, 1339
TscAI CASTG 4 cut(s) 1062, 1162, 1201, 1291
TseFI GTSAC 3 cut(s) 311, 380, 1061
TseI GCWGC 2 cut(s) 714, 905
Tsp45I GTSAC 3 cut(s) 311, 380, 1061
TspDTI ATGAA 7 cut(s) 557, 787, 1007, 1090, 1259, 1320, 1326
TspGWI ACGGA 2 cut(s) 245, 941
TspRI CASTG 4 cut(s) 1062, 1162, 1201, 1291
Tth111I GACNNNGTC 1 cut(s) 224
Van91I CCANNNNNTGG 3 cut(s) 60, 415, 1076
VpaK11BI GGWCC 1 cut(s) 213
XapI RAATTY 2 cut(s) 1220, 1335
XceI RCATGY 1 cut(s) 714
XcmI CCANNNNNNNNNTGG 1 cut(s) 416
XmiI GTMKAC 2 cut(s) 147, 1052
XmnI GAANNNNTTC 1 cut(s) 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.