FvH4_3g37460

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
32136700 .. 32139801
3102 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g37460.t1

Sequence Viewer

Length: 1341 bp
ATGCGTGAGATTCTTCACATTCAGGGAGGCCAATGCGGCAACCAGATCGGAGCCAAGTTCTGGGAGGTCGTCTGCGCCGAGCACGGCATCGACCCCACCGGAAGGTACACCGGAGACTCCGAGCTTCAGCTTGAGAGGGTCAACGTCTACTACAACGAGGCCAGCGGCGGGAGGTATGTTCCACGCGCCGTGCTCATGGATCTGGAGCCTGGGACCATGGACAGCGTCAGATCTGGACTCTACGGTCAGATCTTCCGTCCTGATAACTTCGTCTTCGGTCAGTCCGGCGCCGGAAACAACTGGGCGAAAGGTCACTACACCGAGGGGGCTGAGTTGATCGATTCGGTTCTTGATGTGGTGAGGAAGGAGGCCGAGAACTGTGACTGCTTGCAAGGGTTTCAGGTGTGCCATTCTTTGGGTGGTGGTACTGGATCTGGAATGGGAACGCTATTGATTTCAAAGATTAGGGAGGAGTACCCAGATCGGATGATGATGACTTTCTCTGTGTTCCCATCTCCCAAGGTCTCAGACACTGTTGTGGAGCCTTACAATGCTACTTTGTCTGTTCATCAGCTTGTGGAGAACGCCGATGAGTGCATGGTTCTTGACAACGAGGCTCTCTATGATATTTGCTTCCGCACACTTAAACTCACCACCCCCAGTTTTGGTGATTTGAATCACTTGATCTCCGCAACAATGTCTGGAGTTACATGCTGCCTAAGGTTCCCTGGACAGCTCAACTCTGATTTGCGCAAGCTTGCTGTTAACCTCATCCCCTTCCCTCGTCTCCACTTTTTCATGGTTGGTTTTGCTCCTCTGACCTCAAGAGGGTCTCAGCAGTACAGAGCTTTGACTGTTCCAGAACTCACACAGCAAATGTGGGATTCCAAGAACATGATGTGTGCTGCTGATCCCCGACATGGAAGGTACCTCACAGCATCAGCCATGTTCCGTGGTAAGATGAGCACCAAGGAAGTGGATGACCAGATGATGAATGTTCAGAACAAGAACTCTTCCTACTTTGTTGAGTGGATCCCCAACAATGTCAAGTCAACAGTCTGTGACATCCCACCAACTGGTCTCAAGATGGCTTCAACTTTCATTGGGAACTCCACATCCATCCAAGAGATGTTCAGGAGGGTGAGTGAGCAGTTCACTGCTATGTTCAGGAGGAAGGCTTTCTTGCATTGGTACACTGGTGAAGGCATGGACGAGATGGAGTTCACTGAGGCTGAGAGCAACATGAACGATCTGGTGTCAGAGTATCAGCAGTACCAGGATGCCACCGCTGATGAGGACGAGTATGAAGATGAACAGGGAGAGTATGAGGAGGAGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

447

Amino Acids

50.25

Weight (kDa)

4.75

Isoelectric Point (pI)

35.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tubulin PF00091 3 - 211 1.9e-64 Tubulin/FtsZ family, GTPase domain
Tubulin_C PF03953 261 - 382 1.6e-40 Tubulin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 243
Acc16I TGCGCA 1 cut(s) 752
Acc65I GGTACC 1 cut(s) 927
AccB1I GGYRCC 2 cut(s) 287, 927
AccB7I CCANNNNNTGG 3 cut(s) 60, 415, 1076
AccI GTMKAC 1 cut(s) 147
AccII CGCG 1 cut(s) 186
AciI CCGC 6 cut(s) 36, 165, 168, 637, 690, 1287
AclWI GGATC 5 cut(s) 207, 439, 905, 1027, 1040
AcuI CTGAAG 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 288
AfaI GTAC 7 cut(s) 107, 427, 476, 842, 929, 1193, 1274
AfiI CCNNNNNNNGG 8 cut(s) 60, 102, 168, 415, 665, 828, 920, 1076
AgsI TTSAA 3 cut(s) 459, 676, 1095
AjnI CCWGG 3 cut(s) 208, 727, 1275
AleI CACNNNNGTG 1 cut(s) 536
AloI GAACNNNNNNTCC 2 cut(s) 1100, 1132
AluBI AGCT 6 cut(s) 124, 130, 574, 736, 757, 848
AluI AGCT 6 cut(s) 124, 130, 574, 736, 757, 848
Alw21I GWGCWC 3 cut(s) 84, 195, 968
Alw26I GTCTC 5 cut(s) 108, 529, 791, 837, 1085
AlwI GGATC 5 cut(s) 207, 439, 905, 1027, 1040
AlwNI CAGNNNCTG 1 cut(s) 533
AoxI GGCC 3 cut(s) 28, 159, 369
ApeKI GCWGC 2 cut(s) 714, 905
Asp700I GAANNNNTTC 1 cut(s) 1178
Asp718I GGTACC 1 cut(s) 927
AspLEI GCGC 4 cut(s) 77, 188, 290, 753
AspS9I GGNCC 1 cut(s) 213
AsuHPI GGTGA 5 cut(s) 370, 643, 680, 1153, 1211
AvaII GGWCC 1 cut(s) 213
AxyI CCTNAGG 1 cut(s) 719
BaeI ACNNNNGTAYC 2 cut(s) 1183, 1216
BamHI GGATCC 1 cut(s) 1032
BanI GGYRCC 2 cut(s) 287, 927
BbsI GAAGAC 1 cut(s) 265
Bbv12I GWGCWC 3 cut(s) 84, 195, 968
BbvI GCAGC 2 cut(s) 701, 892
BccI CCATC 4 cut(s) 520, 1081, 1127, 1210
BceAI ACGGC 2 cut(s) 100, 173
BcgI CGANNNNNNTGC 2 cut(s) 28, 62
BciT130I CCWGG 3 cut(s) 210, 729, 1277
BcoDI GTCTC 5 cut(s) 108, 529, 791, 837, 1085
BfoI RGCGCY 1 cut(s) 291
BglI GCCNNNNNGGC 1 cut(s) 36
BglII AGATCT 2 cut(s) 230, 249
BisI GCNGC 4 cut(s) 37, 166, 715, 906
BlsI GCNGC 4 cut(s) 38, 167, 716, 907
Bme1390I CCNGG 3 cut(s) 210, 729, 1277
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 8 cut(s) 52, 207, 214, 289, 543, 725, 929, 1034
BmrFI CCNGG 3 cut(s) 210, 729, 1277
BmrI ACTGGG 2 cut(s) 310, 654
BmsI GCATC 3 cut(s) 96, 947, 1270
BmuI ACTGGG 2 cut(s) 310, 654
BpiI GAAGAC 1 cut(s) 265
BpmI CTGGAG 2 cut(s) 224, 723
BpuEI CTTGAG 3 cut(s) 152, 808, 1067
Bsa29I ATCGAT 1 cut(s) 339
BsaBI GATNNNNATC 1 cut(s) 675
BsaHI GRCGYC 1 cut(s) 288
BsaI GGTCTC 3 cut(s) 529, 837, 1085
BsaJI CCNNGG 7 cut(s) 209, 216, 321, 519, 727, 952, 969
BsaWI WCCGGW 2 cut(s) 98, 110
BsaXI ACNNNNNCTCC 5 cut(s) 671, 701, 1129, 1159, 1322
Bsc4I CCNNNNNNNGG 8 cut(s) 60, 102, 168, 415, 665, 828, 920, 1076
Bse1I ACTGG 5 cut(s) 305, 433, 660, 1081, 1201
Bse21I CCTNAGG 1 cut(s) 719
Bse8I GATNNNNATC 1 cut(s) 675
BseBI CCWGG 3 cut(s) 210, 729, 1277
BseCI ATCGAT 1 cut(s) 339
BseDI CCNNGG 7 cut(s) 209, 216, 321, 519, 727, 952, 969
BseGI GGATG 7 cut(s) 492, 771, 985, 1065, 1115, 1119, 1285
BseJI GATNNNNATC 1 cut(s) 675
BseLI CCNNNNNNNGG 8 cut(s) 60, 102, 168, 415, 665, 828, 920, 1076
BseMII CTCAG 5 cut(s) 321, 540, 848, 1218, 1224
BseNI ACTGG 5 cut(s) 305, 433, 660, 1081, 1201
BseRI GAGGAG 2 cut(s) 485, 804
BseXI GCAGC 2 cut(s) 701, 892
Bsh1236I CGCG 1 cut(s) 186
BshFI GGCC 3 cut(s) 30, 161, 371
BshNI GGYRCC 2 cut(s) 287, 927
BshVI ATCGAT 1 cut(s) 339
BsiHKAI GWGCWC 3 cut(s) 84, 195, 968
BsiSI CCGG 4 cut(s) 99, 111, 285, 291
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 8 cut(s) 60, 102, 168, 415, 665, 828, 920, 1076
BsmAI GTCTC 5 cut(s) 108, 529, 791, 837, 1085
BsmBI CGTCTC 1 cut(s) 791
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 3 cut(s) 30, 161, 371
Bso31I GGTCTC 3 cut(s) 529, 837, 1085
Bsp1286I GDGCHC 3 cut(s) 84, 195, 968
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 6 cut(s) 36, 165, 168, 637, 690, 1287
BspANI GGCC 3 cut(s) 30, 161, 371
BspCNI CTCAG 5 cut(s) 322, 539, 847, 1219, 1225
BspDI ATCGAT 1 cut(s) 339
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 8 cut(s) 52, 207, 214, 289, 543, 725, 929, 1034
BspPI GGATC 5 cut(s) 207, 439, 905, 1027, 1040
BspT107I GGYRCC 2 cut(s) 287, 927
BspTNI GGTCTC 3 cut(s) 529, 837, 1085
BsrI ACTGG 5 cut(s) 305, 433, 660, 1081, 1201
BssECI CCNNGG 7 cut(s) 209, 216, 321, 519, 727, 952, 969
BssNI GRCGYC 1 cut(s) 288
BssT1I CCWWGG 3 cut(s) 216, 519, 969
Bst2UI CCWGG 3 cut(s) 210, 729, 1277
Bst4CI ACNGT 5 cut(s) 245, 380, 535, 856, 1057
Bst6I CTCTTC 1 cut(s) 1018
BstACI GRCGYC 1 cut(s) 288
BstC8I GCNNGC 4 cut(s) 163, 389, 755, 759
BstDEI CTNAG 6 cut(s) 330, 526, 719, 834, 1227, 1233
BstDSI CCRYGG 2 cut(s) 216, 952
BstF5I GGATG 7 cut(s) 492, 771, 985, 1065, 1115, 1119, 1285
BstFNI CGCG 1 cut(s) 186
BstH2I RGCGCY 1 cut(s) 291
BstHHI GCGC 4 cut(s) 77, 188, 290, 753
BstMAI GTCTC 5 cut(s) 108, 529, 791, 837, 1085
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 3 cut(s) 210, 729, 1277
BstNSI RCATGY 1 cut(s) 714
BstSCI CCNGG 3 cut(s) 208, 727, 1275
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 2 cut(s) 701, 892
BstV2I GAAGAC 1 cut(s) 265
BstX2I RGATCY 5 cut(s) 199, 230, 249, 431, 1032
BstXI CCANNNNNNTGG 1 cut(s) 976
BstYI RGATCY 5 cut(s) 199, 230, 249, 431, 1032
Bsu15I ATCGAT 1 cut(s) 339
Bsu36I CCTNAGG 1 cut(s) 719
BsuRI GGCC 3 cut(s) 30, 161, 371
BsuTUI ATCGAT 1 cut(s) 339
BtgI CCRYGG 2 cut(s) 216, 952
BtsCI GGATG 7 cut(s) 492, 771, 985, 1065, 1115, 1119, 1285
BtsI GCAGTG 1 cut(s) 1155
BtsIMutI CAGTG 4 cut(s) 531, 1155, 1194, 1224
Cac8I GCNNGC 4 cut(s) 163, 389, 755, 759
CaiI CAGNNNCTG 1 cut(s) 533
CfoI GCGC 4 cut(s) 77, 188, 290, 753
Cfr13I GGNCC 1 cut(s) 213
ClaI ATCGAT 1 cut(s) 339
CseI GACGC 1 cut(s) 214
Csp6I GTAC 7 cut(s) 106, 426, 475, 841, 928, 1192, 1273
CviQI GTAC 7 cut(s) 106, 426, 475, 841, 928, 1192, 1273
DdeI CTNAG 6 cut(s) 330, 526, 719, 834, 1227, 1233
DinI GGCGCC 1 cut(s) 289
DrdI GACNNNNNNGTC 1 cut(s) 243
DseDI GACNNNNNNGTC 1 cut(s) 243
Eam1104I CTCTTC 1 cut(s) 1018
EarI CTCTTC 1 cut(s) 1018
Eco130I CCWWGG 3 cut(s) 216, 519, 969
Eco31I GGTCTC 3 cut(s) 529, 837, 1085
Eco47I GGWCC 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 110
Eco81I CCTNAGG 1 cut(s) 719
EcoRII CCWGG 3 cut(s) 208, 727, 1275
EcoT14I CCWWGG 3 cut(s) 216, 519, 969
EgeI GGCGCC 1 cut(s) 289
EheI GGCGCC 1 cut(s) 289
ErhI CCWWGG 3 cut(s) 216, 519, 969
Esp3I CGTCTC 1 cut(s) 791
FalI AAGNNNNNCTT 2 cut(s) 1166, 1198
FaqI GGGAC 1 cut(s) 226
FauI CCCGC 1 cut(s) 161
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 4 cut(s) 37, 166, 715, 906
FokI GGATG 7 cut(s) 499, 758, 992, 1052, 1102, 1106, 1292
Fsp4HI GCNGC 4 cut(s) 37, 166, 715, 906
FspI TGCGCA 1 cut(s) 752
GlaI GCGC 4 cut(s) 76, 187, 289, 752
GluI GCNGC 4 cut(s) 37, 166, 715, 906
GsuI CTGGAG 2 cut(s) 224, 723
HaeII RGCGCY 1 cut(s) 291
HaeIII GGCC 3 cut(s) 30, 161, 371
HapII CCGG 4 cut(s) 99, 111, 285, 291
HgaI GACGC 1 cut(s) 214
HhaI GCGC 4 cut(s) 77, 188, 290, 753
Hin1I GRCGYC 1 cut(s) 288
Hin6I GCGC 4 cut(s) 75, 186, 288, 751
HinP1I GCGC 4 cut(s) 75, 186, 288, 751
HincII GTYRAC 3 cut(s) 142, 766, 1053
HindII GTYRAC 3 cut(s) 142, 766, 1053
HindIII AAGCTT 1 cut(s) 755
HinfI GANTC 6 cut(s) 10, 116, 237, 341, 676, 884
HpaI GTTAAC 1 cut(s) 766
HpaII CCGG 4 cut(s) 99, 111, 285, 291
HphI GGTGA 5 cut(s) 370, 643, 680, 1153, 1211
Hpy166II GTNNAC 8 cut(s) 108, 142, 148, 766, 1053, 1155, 1194, 1224
Hpy8I GTNNAC 8 cut(s) 108, 142, 148, 766, 1053, 1155, 1194, 1224
HpyAV CCTTC 6 cut(s) 96, 358, 787, 918, 1168, 1196
HpyCH4III ACNGT 5 cut(s) 245, 380, 535, 856, 1057
HpyCH4IV ACGT 1 cut(s) 144
HpyCH4V TGCA 3 cut(s) 391, 597, 1186
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpyF3I CTNAG 6 cut(s) 330, 526, 719, 834, 1227, 1233
HpySE526I ACGT 1 cut(s) 144
Hsp92I GRCGYC 1 cut(s) 288
HspAI GCGC 4 cut(s) 75, 186, 288, 751
KasI GGCGCC 1 cut(s) 287
KpnI GGTACC 1 cut(s) 931
KspAI GTTAAC 1 cut(s) 766
LmnI GCTCC 4 cut(s) 50, 205, 541, 817
Lsp1109I GCAGC 2 cut(s) 701, 892
LweI GCATC 3 cut(s) 96, 947, 1270
MaeII ACGT 1 cut(s) 144
MaeIII GTNAC 4 cut(s) 311, 380, 706, 1061
MboII GAAGA 5 cut(s) 5, 244, 265, 1005, 1319
MflI RGATCY 5 cut(s) 199, 230, 249, 431, 1032
MhlI GDGCHC 3 cut(s) 84, 195, 968
Mly113I GGCGCC 1 cut(s) 288
MlyI GAGTC 2 cut(s) 110, 231
MroXI GAANNNNTTC 1 cut(s) 1178
MseI TTAA 2 cut(s) 645, 765
MslI CAYNNNNRTG 2 cut(s) 536, 1160
MspA1I CMGCKG 2 cut(s) 165, 1289
MspI CCGG 4 cut(s) 99, 111, 285, 291
MspR9I CCNGG 3 cut(s) 210, 729, 1277
MvaI CCWGG 3 cut(s) 210, 729, 1277
MvnI CGCG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 36
NarI GGCGCC 1 cut(s) 288
NcoI CCATGG 1 cut(s) 216
NlaIV GGNNCC 8 cut(s) 52, 207, 214, 289, 543, 725, 929, 1034
NmeAIII GCCGAG 2 cut(s) 103, 397
NmuCI GTSAC 3 cut(s) 311, 380, 1061
NsbI TGCGCA 1 cut(s) 752
NspI RCATGY 1 cut(s) 714
OliI CACNNNNGTG 1 cut(s) 536
PcsI WCGNNNNNNNCGW 1 cut(s) 75
PdmI GAANNNNTTC 1 cut(s) 1178
PfeI GAWTC 4 cut(s) 10, 341, 676, 884
PflFI GACNNNGTC 1 cut(s) 224
PflMI CCANNNNNTGG 3 cut(s) 60, 415, 1076
PkrI GCNGC 4 cut(s) 38, 167, 716, 907
PleI GAGTC 2 cut(s) 110, 231
PluTI GGCGCC 1 cut(s) 291
PpsI GAGTC 2 cut(s) 110, 231
Psp6I CCWGG 3 cut(s) 208, 727, 1275
PspGI CCWGG 3 cut(s) 208, 727, 1275
PspN4I GGNNCC 8 cut(s) 52, 207, 214, 289, 543, 725, 929, 1034
PspPI GGNCC 1 cut(s) 213
PsrI GAACNNNNNNTAC 2 cut(s) 1001, 1033
PstNI CAGNNNCTG 1 cut(s) 533
PsuI RGATCY 5 cut(s) 199, 230, 249, 431, 1032
PsyI GACNNNGTC 1 cut(s) 224
RsaI GTAC 7 cut(s) 107, 427, 476, 842, 929, 1193, 1274
RsaNI GTAC 7 cut(s) 106, 426, 475, 841, 928, 1192, 1273
RseI CAYNNNNRTG 2 cut(s) 536, 1160
SaqAI TTAA 2 cut(s) 645, 765
SatI GCNGC 4 cut(s) 37, 166, 715, 906
Sau96I GGNCC 1 cut(s) 213
SchI GAGTC 2 cut(s) 110, 231
ScrFI CCNGG 3 cut(s) 210, 729, 1277
SduI GDGCHC 3 cut(s) 84, 195, 968
SfaNI GCATC 3 cut(s) 96, 947, 1270
SfoI GGCGCC 1 cut(s) 289
SinI GGWCC 1 cut(s) 213
SmiMI CAYNNNNRTG 2 cut(s) 536, 1160
SmlI CTYRAG 3 cut(s) 131, 823, 1082
SmoI CTYRAG 3 cut(s) 131, 823, 1082
SsiI CCGC 6 cut(s) 36, 165, 168, 637, 690, 1287
SspDI GGCGCC 1 cut(s) 287
StyD4I CCNGG 3 cut(s) 208, 727, 1275
StyI CCWWGG 3 cut(s) 216, 519, 969
TaaI ACNGT 5 cut(s) 245, 380, 535, 856, 1057
TaiI ACGT 1 cut(s) 147
TaqI TCGA 2 cut(s) 90, 339
TaqII GACCGA 1 cut(s) 266
TatI WGTACW 1 cut(s) 840
TauI GCSGC 2 cut(s) 39, 168
TfiI GAWTC 4 cut(s) 10, 341, 676, 884
Tru1I TTAA 2 cut(s) 645, 765
Tru9I TTAA 2 cut(s) 645, 765
TscAI CASTG 4 cut(s) 538, 1162, 1201, 1231
TseFI GTSAC 3 cut(s) 311, 380, 1061
TseI GCWGC 2 cut(s) 714, 905
Tsp45I GTSAC 3 cut(s) 311, 380, 1061
TspDTI ATGAA 7 cut(s) 557, 787, 1007, 1090, 1259, 1320, 1326
TspGWI ACGGA 2 cut(s) 245, 941
TspRI CASTG 4 cut(s) 538, 1162, 1201, 1231
Tth111I GACNNNGTC 1 cut(s) 224
Van91I CCANNNNNTGG 3 cut(s) 60, 415, 1076
VpaK11BI GGWCC 1 cut(s) 213
XceI RCATGY 1 cut(s) 714
XcmI CCANNNNNNNNNTGG 1 cut(s) 416
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 1178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.