Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006841

Physical Location & Seq

Genomic Coordinates Forward (+)

13152789 .. 13157107

Gene Structure 4319 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30910.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGCAGTGGTGGATGTTCATCGTTTCGCTGAGTCAATCACTTGCCATGCTTGGAGTCCTGATCTCTCCATGGTTGCTCTCTGTCCTAACAACACTGAAGTTCATATCTATAAATCATTGTCTCAAGACCACTGGGAGAGGTTACATGTCCTCCAAAAGCATGACCAAATTGTTTCTGGAATAGATTGGAGCTCAAAGTCCAACAAAATCGTCACTGTTTCTCATGACAGGAACTCGTACGTCTGGAGCCTGGAAGGAGCTGAATGGGTACCAACTCTCGTTATTCTTAGACTAAATCGTGCTGCACTTTGTGTCCAATGGAGCCCCAAAGAGAACAAGTTTGCTGTTGGAAGTGGTGCTAAAACTGTTTGTATTTGCTATTATGAGCAAGAGAATAACTGGTGGGTCAGTAAGCTAATCCGGAAAAGGCACGAATCTTCAGTCACATCTGTTGCTTGGCATCCTAATAATGTTCTTCTGGCAACGACATCAACAGATGGAAAATGTCGGGTATTTTCAACATTTATCAAAGGAGTTGACACAAAGGATTCAAAAGCAGGCTCACCAGCGGAAACGAAATTTGGGGAGCAAATTCTTCAGCTTGATCTCTCATATTCTTGGGCATTTGGTGTTAAATGGTCTCCAAGTGGAAACACCTTAGCTTATGTAGGTCATAGCTCCATGATTTACTTTGTTGATGATGTTGGTCCTTCTCCTTTAGCCCAAAGCGTTGCATTTCGAGATTTGCCTCTTCGTGATGTCCTGTTTATTTCTGAGAAAATGGTGATAGGCGTGGGATATGACAGCAACCCGATGGTATTTGCCTCAGATGATACTGGAATATGGAGCTTTATCAGATACATCGGAGAGAAGAAAGCAGCATCTTCAAATTCCAGTTACAGTTCGCAGTTTTCTGAAGCATTTGGAAAATTCTACGGCAGTCAATCAAAGTCCACAACAGCCAACGATGCTTCTGAATCACGTGGAGGTGTTCATGATAACTGCATAAATTCCATTGTGTCTCTGAGCAAAGCAGGGAGTCCTAAAGTAATGCGATTCAGCACTTCAGGATTGGATGGCAAAGTTGCCATATGGGATCTGGAGAACATGGAACAAGAACTTGGCAATCAGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

378

Amino Acids

41.96

Weight (kDa)

6.42

Isoelectric Point (pI)

35.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_EML_2	PF23414	3 - 89	7.4e-11	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	4 - 90	7.9e-06	THOC3 beta-propeller domain
WD40_CDC20-Fz	PF24807	6 - 174	4.5e-11	CDC20/Fizzy WD40 domain
Beta-prop_WDR5	PF25175	10 - 174	1.1e-18	WDR5 beta-propeller domain
WD40_Prp19	PF24814	66 - 171	1.9e-07	Prp19 WD40 domain
Beta-prop_EML_2	PF23414	67 - 174	4.6e-11	Echinoderm microtubule-associated protein second beta-propeller
WD40_WDHD1_1st	PF24817	92 - 223	1.1e-07	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	101 - 233	7.4e-11	THOC3 beta-propeller domain
Beta-prop_CAF1B_HIR1	PF24105	105 - 192	3.2e-07	CAF1B/HIR1 beta-propeller domain
WD40	PF00400	142 - 172	3.1e-07	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30910 AT2G30910 AT2G30910 AT2G31300 AT2G31300
fragaria_vesca	FvH4_6g37551 FvH4_6g37551 FvH4_6g37551 FvH4_6g37551
malus_domestica	MD09G1156800.v1.1 MD17G1143300.v1.1
prunus_persica	Prupe.3G170000_v2.0.a1
pyrus_communis	pycom09g07550 pycom17g13640
rosa_chinensis	RchiOBHm_Chr2g0095271 RchiOBHm_Chr2g0150441
rosa_laevigata	RLG00000020499
rosa_multiflora	Rmu_co8083376.1_g000001 Rmu_sc0020041.1_g000002 Rmu_ssc0000480.1_g000018
rosa_roxburghii	Rroxscaffold_2G00097100 Rroxscaffold_6G00394160
rosa_rugosa	Rorug02G0421500
rosa_samantha	Rh2AG480700 Rh2DG501700
rosa_wichuraiana	Rw2G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	268
AccIII	TCCGGA	1 cut(s)	420
AciI	CCGC	1 cut(s)	569
AclWI	GGATC	1 cut(s)	1104
AcsI	RAATTY	5 cut(s)	578, 591, 889, 929, 1009
AcuI	CTGAAG	5 cut(s)	117, 423, 581, 936, 1050
AcvI	CACGTG	1 cut(s)	983
AdeI	CACNNNGTG	1 cut(s)	311
AfaI	GTAC	2 cut(s)	239, 270
AflIII	ACRYGT	1 cut(s)	145
AgsI	TTSAA	3 cut(s)	519, 552, 888
AjnI	CCWGG	1 cut(s)	249
AjuI	GAANNNNNNNTTGG	4 cut(s)	564, 596, 1104, 1136
AluBI	AGCT	7 cut(s)	192, 260, 415, 601, 662, 678, 849
AluI	AGCT	7 cut(s)	192, 260, 415, 601, 662, 678, 849
Alw21I	GWGCWC	1 cut(s)	194
Alw26I	GTCTC	3 cut(s)	126, 645, 1026
AlwI	GGATC	1 cut(s)	1104
Aor13HI	TCCGGA	1 cut(s)	420
ApeKI	GCWGC	2 cut(s)	302, 878
ApoI	RAATTY	5 cut(s)	578, 591, 889, 929, 1009
ArsI	GACNNNNNNTTYG	2 cut(s)	426, 458
Asp718I	GGTACC	1 cut(s)	268
AspS9I	GGNCC	1 cut(s)	707
AsuHPI	GGTGA	2 cut(s)	555, 796
AvaII	GGWCC	1 cut(s)	707
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	2 cut(s)	194, 326
BbrPI	CACGTG	1 cut(s)	983
Bbv12I	GWGCWC	1 cut(s)	194
BbvI	GCAGC	2 cut(s)	289, 890
BccI	CCATC	3 cut(s)	491, 808, 1070
BceAI	ACGGC	1 cut(s)	952
BciT130I	CCWGG	1 cut(s)	251
BcoDI	GTCTC	3 cut(s)	126, 645, 1026
BisI	GCNGC	2 cut(s)	303, 879
BlsI	GCNGC	2 cut(s)	304, 880
Bme1390I	CCNGG	1 cut(s)	251
Bme18I	GGWCC	1 cut(s)	707
BmgT120I	GGNCC	1 cut(s)	707
BmiI	GGNNCC	3 cut(s)	248, 270, 323
BmrFI	CCNGG	1 cut(s)	251
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	3 cut(s)	469, 890, 958
BmuI	ACTGGG	1 cut(s)	142
BpmI	CTGGAG	2 cut(s)	265, 1121
Bpu10I	CCTNAGC	1 cut(s)	658
BpuEI	CTTGAG	1 cut(s)	108
BsaAI	YACGTR	1 cut(s)	983
BsaBI	GATNNNNATC	1 cut(s)	18
BsaI	GGTCTC	1 cut(s)	645
BsaJI	CCNNGG	1 cut(s)	69
BsaWI	WCCGGW	1 cut(s)	420
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bse1I	ACTGG	4 cut(s)	137, 404, 841, 894
Bse8I	GATNNNNATC	1 cut(s)	18
BseAI	TCCGGA	1 cut(s)	420
BseBI	CCWGG	1 cut(s)	251
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	3 cut(s)	19, 460, 1081
BseJI	GATNNNNATC	1 cut(s)	18
BseMII	CTCAG	4 cut(s)	21, 765, 840, 1016
BseNI	ACTGG	4 cut(s)	137, 404, 841, 894
BseXI	GCAGC	2 cut(s)	289, 890
BsgI	GTGCAG	1 cut(s)	288
BshNI	GGYRCC	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	194
BsiSI	CCGG	1 cut(s)	421
BsiWI	CGTACG	1 cut(s)	237
BsmAI	GTCTC	3 cut(s)	126, 645, 1026
Bso31I	GGTCTC	1 cut(s)	645
Bsp1286I	GDGCHC	2 cut(s)	194, 326
Bsp13I	TCCGGA	1 cut(s)	420
Bsp143I	GATC	3 cut(s)	61, 604, 1096
Bsp19I	CCATGG	1 cut(s)	69
BspACI	CCGC	1 cut(s)	569
BspCNI	CTCAG	4 cut(s)	22, 766, 839, 1017
BspEI	TCCGGA	1 cut(s)	420
BspHI	TCATGA	2 cut(s)	223, 994
BspLI	GGNNCC	3 cut(s)	248, 270, 323
BspPI	GGATC	1 cut(s)	1104
BspT107I	GGYRCC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	645
BsrI	ACTGG	4 cut(s)	137, 404, 841, 894
BssECI	CCNNGG	1 cut(s)	69
BssMI	GATC	3 cut(s)	61, 604, 1096
BssT1I	CCWWGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	251
Bst4CI	ACNGT	3 cut(s)	217, 367, 902
Bst6I	CTCTTC	1 cut(s)	756
BstBAI	YACGTR	1 cut(s)	983
BstC8I	GCNNGC	1 cut(s)	559
BstDEI	CTNAG	6 cut(s)	30, 287, 658, 774, 826, 1025
BstDSI	CCRYGG	1 cut(s)	69
BstF5I	GGATG	3 cut(s)	19, 460, 1081
BstKTI	GATC	3 cut(s)	64, 607, 1099
BstMAI	GTCTC	3 cut(s)	126, 645, 1026
BstMBI	GATC	3 cut(s)	61, 604, 1096
BstMWI	GCNNNNNNNGC	1 cut(s)	968
BstNI	CCWGG	1 cut(s)	251
BstNSI	RCATGY	1 cut(s)	149
BstSCI	CCNGG	1 cut(s)	249
BstV1I	GCAGC	2 cut(s)	289, 890
BstX2I	RGATCY	1 cut(s)	1096
BstYI	RGATCY	1 cut(s)	1096
BtgI	CCRYGG	1 cut(s)	69
BtsCI	GGATG	3 cut(s)	19, 460, 1081
BtsI	GCAGTG	1 cut(s)	12
BtsIMutI	CAGTG	4 cut(s)	12, 93, 130, 213
Cac8I	GCNNGC	1 cut(s)	559
CciI	TCATGA	2 cut(s)	223, 994
Cfr13I	GGNCC	1 cut(s)	707
Csp6I	GTAC	2 cut(s)	238, 269
CviAII	CATG	8 cut(s)	47, 70, 146, 161, 224, 682, 995, 1108
CviQI	GTAC	2 cut(s)	238, 269
DdeI	CTNAG	6 cut(s)	30, 287, 658, 774, 826, 1025
DpnI	GATC	3 cut(s)	63, 606, 1098
DpnII	GATC	3 cut(s)	61, 604, 1096
DraIII	CACNNNGTG	1 cut(s)	311
Eam1104I	CTCTTC	1 cut(s)	756
EarI	CTCTTC	1 cut(s)	756
Ecl136II	GAGCTC	1 cut(s)	192
Eco130I	CCWWGG	1 cut(s)	69
Eco24I	GRGCYC	2 cut(s)	194, 326
Eco31I	GGTCTC	1 cut(s)	645
Eco47I	GGWCC	1 cut(s)	707
Eco53kI	GAGCTC	1 cut(s)	192
Eco57I	CTGAAG	5 cut(s)	117, 423, 581, 936, 1050
Eco72I	CACGTG	1 cut(s)	983
EcoICRI	GAGCTC	1 cut(s)	192
EcoRII	CCWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	69
EcoT38I	GRGCYC	2 cut(s)	194, 326
ErhI	CCWWGG	1 cut(s)	69
FaeI	CATG	8 cut(s)	50, 73, 149, 164, 227, 685, 998, 1111
FatI	CATG	8 cut(s)	46, 69, 145, 160, 223, 681, 994, 1107
FauNDI	CATATG	1 cut(s)	1091
Fnu4HI	GCNGC	2 cut(s)	303, 879
FokI	GGATG	3 cut(s)	26, 447, 1088
FriOI	GRGCYC	2 cut(s)	194, 326
Fsp4HI	GCNGC	2 cut(s)	303, 879
GluI	GCNGC	2 cut(s)	303, 879
GsuI	CTGGAG	2 cut(s)	265, 1121
HapII	CCGG	1 cut(s)	421
Hin1II	CATG	8 cut(s)	50, 73, 149, 164, 227, 685, 998, 1111
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HinfI	GANTC	7 cut(s)	32, 55, 434, 548, 977, 1039, 1056
HpaII	CCGG	1 cut(s)	421
HphI	GGTGA	2 cut(s)	555, 796
Hpy166II	GTNNAC	2 cut(s)	538, 954
Hpy188I	TCNGA	7 cut(s)	775, 829, 857, 866, 916, 976, 1026
Hpy8I	GTNNAC	2 cut(s)	538, 954
HpyAV	CCTTC	2 cut(s)	248, 720
HpyCH4III	ACNGT	3 cut(s)	217, 367, 902
HpyCH4IV	ACGT	2 cut(s)	240, 982
HpyCH4V	TGCA	3 cut(s)	305, 734, 1005
HpyF10VI	GCNNNNNNNGC	1 cut(s)	968
HpyF3I	CTNAG	6 cut(s)	30, 287, 658, 774, 826, 1025
HpySE526I	ACGT	2 cut(s)	240, 982
Hsp92II	CATG	8 cut(s)	50, 73, 149, 164, 227, 685, 998, 1111
Kpn2I	TCCGGA	1 cut(s)	420
KpnI	GGTACC	1 cut(s)	272
Kzo9I	GATC	3 cut(s)	61, 604, 1096
LmnI	GCTCC	7 cut(s)	189, 246, 257, 321, 586, 683, 846
Lsp1109I	GCAGC	2 cut(s)	289, 890
LweI	GCATC	3 cut(s)	469, 890, 958
MaeII	ACGT	2 cut(s)	240, 982
MaeIII	GTNAC	4 cut(s)	141, 211, 442, 896
MalI	GATC	3 cut(s)	63, 606, 1098
MboI	GATC	3 cut(s)	61, 604, 1096
MboII	GAAGA	6 cut(s)	429, 467, 587, 743, 876, 883
MflI	RGATCY	1 cut(s)	1096
MhlI	GDGCHC	2 cut(s)	194, 326
MluCI	AATT	6 cut(s)	168, 578, 591, 889, 929, 1009
MlyI	GAGTC	3 cut(s)	41, 64, 1048
MmeI	TCCRAC	2 cut(s)	225, 328
MnlI	CCTC	5 cut(s)	132, 161, 759, 835, 980
MroI	TCCGGA	1 cut(s)	420
MseI	TTAA	2 cut(s)	633, 1135
MspA1I	CMGCKG	1 cut(s)	569
MspI	CCGG	1 cut(s)	421
MspR9I	CCNGG	1 cut(s)	251
MvaI	CCWGG	1 cut(s)	251
MwoI	GCNNNNNNNGC	1 cut(s)	968
NcoI	CCATGG	1 cut(s)	69
NdeI	CATATG	1 cut(s)	1091
NdeII	GATC	3 cut(s)	61, 604, 1096
NlaIII	CATG	8 cut(s)	50, 73, 149, 164, 227, 685, 998, 1111
NlaIV	GGNNCC	3 cut(s)	248, 270, 323
NmuCI	GTSAC	2 cut(s)	211, 442
NspI	RCATGY	1 cut(s)	149
PagI	TCATGA	2 cut(s)	223, 994
PciI	ACATGT	1 cut(s)	145
PfeI	GAWTC	4 cut(s)	434, 548, 977, 1056
Pfl23II	CGTACG	1 cut(s)	237
PkrI	GCNGC	2 cut(s)	304, 880
PleI	GAGTC	3 cut(s)	40, 63, 1047
PmaCI	CACGTG	1 cut(s)	983
PmlI	CACGTG	1 cut(s)	983
PpsI	GAGTC	3 cut(s)	40, 63, 1047
Ppu21I	YACGTR	1 cut(s)	983
PscI	ACATGT	1 cut(s)	145
Psp124BI	GAGCTC	1 cut(s)	194
Psp6I	CCWGG	1 cut(s)	249
PspCI	CACGTG	1 cut(s)	983
PspGI	CCWGG	1 cut(s)	249
PspLI	CGTACG	1 cut(s)	237
PspN4I	GGNNCC	3 cut(s)	248, 270, 323
PspPI	GGNCC	1 cut(s)	707
PsuI	RGATCY	1 cut(s)	1096
RsaI	GTAC	2 cut(s)	239, 270
RsaNI	GTAC	2 cut(s)	238, 269
SacI	GAGCTC	1 cut(s)	194
SaqAI	TTAA	2 cut(s)	633, 1135
SatI	GCNGC	2 cut(s)	303, 879
Sau3AI	GATC	3 cut(s)	61, 604, 1096
Sau96I	GGNCC	1 cut(s)	707
SchI	GAGTC	3 cut(s)	41, 64, 1048
ScrFI	CCNGG	1 cut(s)	251
SduI	GDGCHC	2 cut(s)	194, 326
SfaNI	GCATC	3 cut(s)	469, 890, 958
SinI	GGWCC	1 cut(s)	707
SmlI	CTYRAG	1 cut(s)	123
SmoI	CTYRAG	1 cut(s)	123
Sse9I	AATT	6 cut(s)	168, 578, 591, 889, 929, 1009
SsiI	CCGC	1 cut(s)	569
SstI	GAGCTC	1 cut(s)	194
StyD4I	CCNGG	1 cut(s)	249
StyI	CCWWGG	1 cut(s)	69
TaaI	ACNGT	3 cut(s)	217, 367, 902
TaiI	ACGT	2 cut(s)	243, 985
TaqI	TCGA	1 cut(s)	739
TasI	AATT	6 cut(s)	168, 578, 591, 889, 929, 1009
TfiI	GAWTC	4 cut(s)	434, 548, 977, 1056
Tru1I	TTAA	2 cut(s)	633, 1135
Tru9I	TTAA	2 cut(s)	633, 1135
TscAI	CASTG	4 cut(s)	12, 100, 137, 220
TseFI	GTSAC	2 cut(s)	211, 442
TseI	GCWGC	2 cut(s)	302, 878
Tsp45I	GTSAC	2 cut(s)	211, 442
TspDTI	ATGAA	3 cut(s)	8, 92, 983
TspRI	CASTG	4 cut(s)	12, 100, 137, 220
VpaK11BI	GGWCC	1 cut(s)	707
XapI	RAATTY	5 cut(s)	578, 591, 889, 929, 1009
XceI	RCATGY	1 cut(s)	149
XcmI	CCANNNNNNNNNTGG	2 cut(s)	173, 1096

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.