Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0006841

Physical Location & Seq

Genomic Coordinates Forward (+)

72153150 .. 72157775

Gene Structure 4626 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG501700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 777 bp

ATGGCCGCGGTCGAAGTGCACCGTTTTGCTCAGTGCATCACTTGCCATGCTTGGAGCCCTGATCGCTCAATGCTTGCATTTTGCCCAAATAACAATGAGGTTCACATCTATACTCTGATGCAATCCAAATGGGAAAAGCTGCATGTTCTTCAGAAGCATGACCAAATTATTTCTGGGATAGACTGGAGTGCAAGGTCAAACAAAATAGTTACTTCATCTCATGATCGGAATTCTTATGTCTGGAACCTAGAAGGATCAGAGTGGGTACCAACACTTGTCATCCTTCGGCTAAATCGTGCTGCACTTTGTGTTCAGTGGAGTCCAAAAGAAAACAAGTTTGCTGTAGGAAGTGGGGCAAAAACTGTTTGCATATGCTACTATGAGCAAGAGAACAACTGGTGGGTCAGTAAACTGATCAGAAAAAGACACGACTCTTCTGTTACAAGTGTTGCTTGGCATCCCAATAATATTCTTCTTGCAACAGCATCTACAGATGGAAAATGCCGAATATTTTCCACTTACATTAAGGTCGTCGATGCAAAGGAATCAAAAACAGTCTCATCTTCAGATGCAAAGTTTGGAGAGCTAATTCTTCAGCTTGATCTATCGTCTTCTTGGGCATTTGGTGTGAGGTGGTCACCAAGTGGCAATACCTTAGCATATGTAGGCCATAACTCTATGATTTACTTTGTCGATGAGGTGGGGCCTTCTCCTCTGGCTCAAAATGTTGCATTCCGTGATTTGCCTCTCCGTGATGTGGGTCTTATTTCTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005856 GO:0005885 GO:0006996 GO:0007010 GO:0007015 GO:0008064 GO:0008092 GO:0008150 GO:0009987 GO:0010638 GO:0015629 GO:0016043 GO:0030029 GO:0030036 GO:0030832 GO:0030833 GO:0030838 GO:0031334 GO:0032271 GO:0032273 GO:0032535 GO:0032956 GO:0032970 GO:0032991 GO:0033043 GO:0034314 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043254 GO:0044087 GO:0044089 GO:0044422 GO:0044424 GO:0044430 GO:0044446 GO:0044464 GO:0044877 GO:0045010 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051015 GO:0051128 GO:0051130 GO:0051493 GO:0051495 GO:0065007 GO:0065008 GO:0071840 GO:0090066 GO:0097435 GO:0110053 GO:1902903 GO:1902905

KEGG Pathways

Metabolic & Signaling

ko04144 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 map04144 map04666 map04810 map05100 map05130 map05131 map05132

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

258

Amino Acids

29.15

Weight (kDa)

8.44

Isoelectric Point (pI)

42.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Beta-prop_EML	PF23409	4 - 173	2.8e-06	Echinoderm microtubule-associated protein first beta-propeller
Beta-prop_EML_2	PF23414	4 - 88	4.8e-13	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_THOC3	PF25174	7 - 86	3.7e-07	THOC3 beta-propeller domain
Beta-prop_RIG_2nd	PF23775	9 - 118	6.6e-09	RIG second beta-propeller
Beta-prop_WDR5	PF25175	10 - 174	6e-21	WDR5 beta-propeller domain
WD40_CDC20-Fz	PF24807	10 - 130	1.2e-10	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	11 - 86	2.4e-07	WDR3 first beta-propeller domain
WD40_Gbeta	PF25391	11 - 172	2.3e-07	G protein beta WD-40 repeat protein
WD40_Prp19	PF24814	11 - 172	7.4e-12	Prp19 WD40 domain
WD40_WDHD1_1st	PF24817	11 - 87	3.2e-07	WDHD1 first WD40 domain
Beta-prop_IFT140_1st	PF23383	13 - 84	9.3e-06	IFT140 first beta-propeller
Beta-prop_WDR35_TULP_N	PF24797	48 - 178	8.6e-06	WDR35/TULP4 N-terminal
Beta-prop_EML_2	PF23414	66 - 188	1.5e-12	Echinoderm microtubule-associated protein second beta-propeller
Beta-prop_WDR3_1st	PF25173	79 - 172	1.5e-06	WDR3 first beta-propeller domain
WD40_WDHD1_1st	PF24817	90 - 227	1.2e-08	WDHD1 first WD40 domain
Beta-prop_THOC3	PF25174	100 - 173	6.6e-10	THOC3 beta-propeller domain
ANAPC4_WD40	PF12894	104 - 174	2.2e-07	Anaphase-promoting complex subunit 4 WD40 domain
Beta-prop_CAF1B_HIR1	PF24105	104 - 187	2.5e-07	CAF1B/HIR1 beta-propeller domain
WD40	PF00400	141 - 171	6.9e-08	WD domain, G-beta repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0006841)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30910 AT2G30910 AT2G30910 AT2G31300 AT2G31300
fragaria_vesca	FvH4_6g37551 FvH4_6g37551 FvH4_6g37551 FvH4_6g37551
malus_domestica	MD09G1156800.v1.1 MD17G1143300.v1.1
prunus_persica	Prupe.3G170000_v2.0.a1
pyrus_communis	pycom09g07550 pycom17g13640
rosa_chinensis	RchiOBHm_Chr2g0095271 RchiOBHm_Chr2g0150441
rosa_laevigata	RLG00000020499
rosa_multiflora	Rmu_co8083376.1_g000001 Rmu_sc0020041.1_g000002 Rmu_ssc0000480.1_g000018
rosa_roxburghii	Rroxscaffold_2G00097100 Rroxscaffold_6G00394160
rosa_rugosa	Rorug02G0421500
rosa_samantha	Rh2AG480700 Rh2DG501700
rosa_wichuraiana	Rw2G039250

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	265
AccB1I	GGYRCC	1 cut(s)	265
AccII	CGCG	1 cut(s)	8
AciI	CCGC	2 cut(s)	6, 8
AclWI	GGATC	1 cut(s)	262
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	229
AcuI	CTGAAG	3 cut(s)	134, 549, 578
AdeI	CACNNNGTG	2 cut(s)	308, 644
AfaI	GTAC	1 cut(s)	267
AfiI	CCNNNNNNNGG	1 cut(s)	757
AluBI	AGCT	3 cut(s)	139, 586, 598
AluI	AGCT	3 cut(s)	139, 586, 598
Alw21I	GWGCWC	1 cut(s)	21
Alw26I	GTCTC	1 cut(s)	562
Alw44I	GTGCAC	1 cut(s)	17
AlwI	GGATC	1 cut(s)	262
AoxI	GGCC	3 cut(s)	3, 667, 704
ApaLI	GTGCAC	1 cut(s)	17
ApeKI	GCWGC	2 cut(s)	139, 299
ApoI	RAATTY	1 cut(s)	229
Asp700I	GAANNNNTTC	1 cut(s)	511
Asp718I	GGTACC	1 cut(s)	265
AspS9I	GGNCC	1 cut(s)	704
AsuHPI	GGTGA	1 cut(s)	630
BaeGI	GKGCMC	1 cut(s)	21
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	59
BbsI	GAAGAC	1 cut(s)	603
Bbv12I	GWGCWC	1 cut(s)	21
BbvI	GCAGC	2 cut(s)	126, 286
BccI	CCATC	1 cut(s)	488
BclI	TGATCA	1 cut(s)	414
BcoDI	GTCTC	1 cut(s)	562
BfaI	CTAG	1 cut(s)	248
BfmI	CTRYAG	2 cut(s)	342, 489
BisI	GCNGC	3 cut(s)	6, 140, 300
BlsI	GCNGC	3 cut(s)	7, 141, 301
BmgT120I	GGNCC	1 cut(s)	704
BmiI	GGNNCC	4 cut(s)	56, 245, 267, 705
BmsI	GCATC	6 cut(s)	45, 108, 466, 494, 526, 559
BpiI	GAAGAC	1 cut(s)	603
BpmI	CTGGAG	1 cut(s)	205
Bpu10I	CCTNAGC	1 cut(s)	655
BsaJI	CCNNGG	1 cut(s)	6
Bsc4I	CCNNNNNNNGG	1 cut(s)	757
Bse1I	ACTGG	2 cut(s)	188, 401
BseDI	CCNNGG	1 cut(s)	6
BseGI	GGATG	2 cut(s)	279, 457
BseLI	CCNNNNNNNGG	1 cut(s)	757
BseMII	CTCAG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	188, 401
BseRI	GAGGAG	1 cut(s)	702
BseSI	GKGCMC	1 cut(s)	21
BseXI	GCAGC	2 cut(s)	126, 286
BsgI	GTGCAG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	8
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	3 cut(s)	5, 669, 706
BshNI	GGYRCC	1 cut(s)	265
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	757
BsmAI	GTCTC	1 cut(s)	562
BsmI	GAATGC	1 cut(s)	731
BsnI	GGCC	3 cut(s)	5, 669, 706
Bsp1286I	GDGCHC	2 cut(s)	21, 59
Bsp143I	GATC	5 cut(s)	61, 223, 254, 414, 601
BspACI	CCGC	2 cut(s)	6, 8
BspANI	GGCC	3 cut(s)	5, 669, 706
BspCNI	CTCAG	1 cut(s)	43
BspFNI	CGCG	1 cut(s)	8
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	4 cut(s)	56, 245, 267, 705
BspPI	GGATC	1 cut(s)	262
BspT107I	GGYRCC	1 cut(s)	265
BsrI	ACTGG	2 cut(s)	188, 401
BssECI	CCNNGG	1 cut(s)	6
BssMI	GATC	5 cut(s)	61, 223, 254, 414, 601
Bst4CI	ACNGT	3 cut(s)	23, 364, 556
Bst6I	CTCTTC	1 cut(s)	439
BstAPI	GCANNNNNTGC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	75
BstDEI	CTNAG	2 cut(s)	30, 655
BstDSI	CCRYGG	1 cut(s)	6
BstEII	GGTNACC	1 cut(s)	636
BstF5I	GGATG	2 cut(s)	279, 457
BstFNI	CGCG	1 cut(s)	8
BstKTI	GATC	5 cut(s)	64, 226, 257, 417, 604
BstMAI	GTCTC	1 cut(s)	562
BstMBI	GATC	5 cut(s)	61, 223, 254, 414, 601
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 63
BstNSI	RCATGY	1 cut(s)	146
BstPI	GGTNACC	1 cut(s)	636
BstSFI	CTRYAG	2 cut(s)	342, 489
BstSLI	GKGCMC	1 cut(s)	21
BstUI	CGCG	1 cut(s)	8
BstV1I	GCAGC	2 cut(s)	126, 286
BstV2I	GAAGAC	1 cut(s)	603
BsuRI	GGCC	3 cut(s)	5, 669, 706
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	279, 457
BtsIMutI	CAGTG	2 cut(s)	38, 320
Cac8I	GCNNGC	1 cut(s)	75
CciI	TCATGA	1 cut(s)	220
Cfr13I	GGNCC	1 cut(s)	704
Cfr42I	CCGCGG	1 cut(s)	9
Csp6I	GTAC	1 cut(s)	266
CviAII	CATG	4 cut(s)	47, 143, 158, 221
CviJI	RGCY	9 cut(s)	5, 57, 139, 289, 586, 598, 669, 706, 719
CviKI_1	RGCY	9 cut(s)	5, 57, 139, 289, 586, 598, 669, 706, 719
CviQI	GTAC	1 cut(s)	266
DdeI	CTNAG	2 cut(s)	30, 655
DpnI	GATC	5 cut(s)	63, 225, 256, 416, 603
DpnII	GATC	5 cut(s)	61, 223, 254, 414, 601
DraIII	CACNNNGTG	2 cut(s)	308, 644
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	439
EarI	CTCTTC	1 cut(s)	439
Eco24I	GRGCYC	1 cut(s)	59
Eco57I	CTGAAG	3 cut(s)	134, 549, 578
Eco91I	GGTNACC	1 cut(s)	636
EcoO109I	RGGNCCY	1 cut(s)	704
EcoO65I	GGTNACC	1 cut(s)	636
EcoRI	GAATTC	1 cut(s)	229
EcoT38I	GRGCYC	1 cut(s)	59
FaeI	CATG	4 cut(s)	50, 146, 161, 224
FalI	AAGNNNNNCTT	2 cut(s)	436, 468
FatI	CATG	4 cut(s)	46, 142, 157, 220
FauNDI	CATATG	2 cut(s)	371, 661
FbaI	TGATCA	1 cut(s)	414
Fnu4HI	GCNGC	3 cut(s)	6, 140, 300
FokI	GGATG	2 cut(s)	266, 444
FriOI	GRGCYC	1 cut(s)	59
Fsp4HI	GCNGC	3 cut(s)	6, 140, 300
FspBI	CTAG	1 cut(s)	248
GluI	GCNGC	3 cut(s)	6, 140, 300
GsuI	CTGGAG	1 cut(s)	205
HaeIII	GGCC	3 cut(s)	5, 669, 706
Hin1II	CATG	4 cut(s)	50, 146, 161, 224
HinfI	GANTC	3 cut(s)	319, 431, 545
HphI	GGTGA	1 cut(s)	630
Hpy166II	GTNNAC	3 cut(s)	19, 103, 410
Hpy188I	TCNGA	7 cut(s)	117, 153, 228, 259, 419, 568, 776
Hpy188III	TCNNGA	2 cut(s)	221, 241
Hpy8I	GTNNAC	3 cut(s)	19, 103, 410
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	3 cut(s)	245, 293, 717
HpyCH4III	ACNGT	3 cut(s)	23, 364, 556
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 63
HpyF3I	CTNAG	2 cut(s)	30, 655
Hsp92II	CATG	4 cut(s)	50, 146, 161, 224
KpnI	GGTACC	1 cut(s)	269
Ksp22I	TGATCA	1 cut(s)	414
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	5 cut(s)	61, 223, 254, 414, 601
LmnI	GCTCC	1 cut(s)	54
LpnPI	CCDG	6 cut(s)	72, 159, 169, 226, 382, 701
Lsp1109I	GCAGC	2 cut(s)	126, 286
LweI	GCATC	6 cut(s)	45, 108, 466, 494, 526, 559
MaeI	CTAG	1 cut(s)	248
MaeIII	GTNAC	3 cut(s)	208, 439, 636
MalI	GATC	5 cut(s)	63, 225, 256, 416, 603
MboI	GATC	5 cut(s)	61, 223, 254, 414, 601
MboII	GAAGA	6 cut(s)	140, 426, 464, 555, 584, 603
MhlI	GDGCHC	2 cut(s)	21, 59
MluCI	AATT	3 cut(s)	165, 229, 588
MlyI	GAGTC	2 cut(s)	328, 425
MnlI	CCTC	5 cut(s)	91, 624, 691, 723, 756
MroXI	GAANNNNTTC	1 cut(s)	511
MseI	TTAA	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	8
Mva1269I	GAATGC	1 cut(s)	731
MvnI	CGCG	1 cut(s)	8
MwoI	GCNNNNNNNGC	2 cut(s)	42, 63
NdeI	CATATG	2 cut(s)	371, 661
NdeII	GATC	5 cut(s)	61, 223, 254, 414, 601
NlaIII	CATG	4 cut(s)	50, 146, 161, 224
NlaIV	GGNNCC	4 cut(s)	56, 245, 267, 705
NmuCI	GTSAC	1 cut(s)	636
NspI	RCATGY	1 cut(s)	146
PagI	TCATGA	1 cut(s)	220
PcsI	WCGNNNNNNNCGW	1 cut(s)	292
PctI	GAATGC	1 cut(s)	731
PdmI	GAANNNNTTC	1 cut(s)	511
PfeI	GAWTC	1 cut(s)	545
PkrI	GCNGC	3 cut(s)	7, 141, 301
PleI	GAGTC	2 cut(s)	327, 425
PpsI	GAGTC	2 cut(s)	327, 425
PspEI	GGTNACC	1 cut(s)	636
PspN4I	GGNNCC	4 cut(s)	56, 245, 267, 705
PspPI	GGNCC	1 cut(s)	704
RsaI	GTAC	1 cut(s)	267
RsaNI	GTAC	1 cut(s)	266
SacII	CCGCGG	1 cut(s)	9
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	3 cut(s)	6, 140, 300
Sau3AI	GATC	5 cut(s)	61, 223, 254, 414, 601
Sau96I	GGNCC	1 cut(s)	704
SchI	GAGTC	2 cut(s)	328, 425
SduI	GDGCHC	2 cut(s)	21, 59
SfaNI	GCATC	6 cut(s)	45, 108, 466, 494, 526, 559
SfcI	CTRYAG	2 cut(s)	342, 489
Sfr303I	CCGCGG	1 cut(s)	9
SgrBI	CCGCGG	1 cut(s)	9
Sse9I	AATT	3 cut(s)	165, 229, 588
SsiI	CCGC	2 cut(s)	6, 8
SspI	AATATT	2 cut(s)	469, 510
SspMI	CTAG	1 cut(s)	248
TaaI	ACNGT	3 cut(s)	23, 364, 556
TaqI	TCGA	3 cut(s)	12, 534, 693
TasI	AATT	3 cut(s)	165, 229, 588
TauI	GCSGC	1 cut(s)	8
TfiI	GAWTC	1 cut(s)	545
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	2 cut(s)	38, 320
TseFI	GTSAC	1 cut(s)	636
TseI	GCWGC	2 cut(s)	139, 299
Tsp45I	GTSAC	1 cut(s)	636
TspDTI	ATGAA	1 cut(s)	204
TspGWI	ACGGA	2 cut(s)	725, 740
TspRI	CASTG	2 cut(s)	38, 320
VneI	GTGCAC	1 cut(s)	17
XapI	RAATTY	1 cut(s)	229
XceI	RCATGY	1 cut(s)	146
XcmI	CCANNNNNNNNNTGG	1 cut(s)	170
XmnI	GAANNNNTTC	1 cut(s)	511
XspI	CTAG	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.